Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007931

Physical Location & Seq

Genomic Coordinates Reverse (-)

29132197 .. 29138627

Gene Structure 6431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGAACAGGATTCGTCTTCAACGTGTTCTGGAAACTCGGAAGGTAGTACTCTGCAAAGAGCAAGCAATGGCTTATGCTCGTGCTTTAGTTGCTGGATTTGAACTGGACTATATTGATGATCTTTTATCTTTTGCTGATACTTTTGGAGCTTCGCGATTAAGGGAAGCATGCATAAATTTCATAAATCTATACAAGCAAAAGAACGAAGATAGGTTTTGGATGGAAGAAATAGCAGCAATGCAGGCACTCTCTCAGCCGCAACTGCCATACTTGGCAACATCAGGAATCATTCTTGCTGGAGAAGATAATGAGCCCAGTCAGAATCTTAACCAAAGTATTCTCTCCATTGGGAAGAATGGTTCACTAGATACTTCAGTGTCTGATTCAACTGCAAGTCATGGAAGTCTGGATGCGAACCAAGATGGGAAGGCTCAAGTACCAAACCCATGGCCAAACCATCTTCCGCAGTACATGCAAACTTTTCAAGGTCCTGCATTTCAACAAATGCACCCCTATCAAGGTTACATGTTCCCTGGTATGCAGGTTCCACCATACTATCCAGGGAATATGAAATGGCCTCCAAATGTGGAAGACTCTGGCTTTATGTTTGATCAGGAATCTGATGGCCGTTGGAAGCATAGATCTCATAGAACTAAAAAGAAACATTCTCATGAAAGAGCACTAGAAACTTCAGAACAAGATGGATCCAACGAAAACACTGGTTCAAGTTATGAAAGTGAATCTGATGATCATTTCCAGAATGGTAAAAGGCACTCTGGAACAGAGCAGCAGCATCGGAAAAAGCATGGGCAGAAGTCCTCAAGAAAGGTTGTTATCCGCAATATCAATTACATAAGCTCTAAGAGGGATGGAGAAAGTGGGTCTGAGGGAAATTCATCTGATGAGGATGGATACATTGATGGGAAATCCATTAAACAGCACGTAGAGGAAGCTGTTGGTTCATTGGAGAAGAGACATAAATCAAGCTCACGTCGTCACCAAAAACAAGGTGGAAGCAAGTTGCATGGCAGTGTAGATGATTCAAATGGAGAGGAACTTAAAAATGCAGATGCAAATAAACATGAGGGAGAAAAGCAAAATGACAACTGGAGTGCTTTCCAGAATCTTCTCATGAGGGACGAGGATCCAAGTTCTTTCAGTACAGAATCACATAATGTGCGGATTGAGGATGAATATCTTTCAAGTAATAACACTGGTCAAGGACGATCATTTGAATTTAACCAGGAACATGAGAAAGTAACGAAGCAAAGAGCAGTTTCAAGTGAGTATTTGATGGTGTCAGAGAGGGATACAGGAAATGAGAGTAAAACTCATGTCCCATACTTCGAAGGTGGCGATGATGTTGGTCGCACTACCAAAAAAAATGGCGCATACGAGGATTTATTATTTTCACAGAGAAATGAAGAGTCAAGGATCAATTCCCATGATACTCTATCTGATTGCGCAAATGAATTGTACAAAACCAAATGTCCAAAAGAAGGGGATTGGTTTATCAGCAACCAACCAGATAATCAGGTTGCCAGCAATGATCTGAAATTGCTTGATGGGGTTTATGCTTCATCAGCGTTGGCTATGGATAGTGTTCATGCTGAGAAAAAGAGAGAAGTTCTAGTGGATGATTCTTTCATGGTTCAAGACCGATCAACAGTTAATCATCAATCTGATTCTCAGTTCAGGACCAACTTAAGCTTCGTCCCAGAATACACTGGAGCTACTCAAAATGAATATGGCAAGCCAGAGATTTTAAATGATAAGCCTGCAGCCTCTAGCATGCATGAACCAGATGACCTATTCATGCTGCTTGATCGCGGTTCAGCTGTGGACCAGGATGTGGCACCATGGAATCCAGAGATGGACTACGAACTTAATGCTTCATCACTTGAAGCCAGTGAAAAGAATCCTGGCATTGAAACAACTGATTCTATTGGTGATGAGCAGCCTTCTAATAGTAAGGGCAAGAATGCTAAAAACAGTGGAACTCCTGGAGGAAAAGTTCCAACCAAAGAAGCAAGGTCTAAAGTTGCAAATGGATCTTTGGGGAAGAGCAGATATGATATCTTATCCAGAAGTAAGAAACCTTCTTCTGTAAGCAAAAGCACAGTCCACAGAAGCAAATTTGAAAAGGATGAAGAACAAAGAAAGAGAATGGAAGAGTTAGTAATTGAACGCCAGAAGAGAATTGCTGAGAGGAGTGCTGCTCGTGGTTCTAATACTGCAACATCTAAGAAGGCCCCAGCAGAAATTAAAAATGCCAAAACCACCATGACTAAGACAAAGAATGATAAGCTTAAAGTTCAGTCCCCAACCGAAGAGACCAAGAAAGCAGAGAAGCCTATCATGCGGAGTTCCACCATTGAACGCCTTGCAACTGCAAGGGTAACTGAGAAGTTGCCAACAACTCTGCCGAGTTCTGGCCAACCCAAAAAGCAAACAATCAAGGCAAATGGGGTAGCTGCAGCTGCCTCATCACAGAAGGCAGCTGGTGCTGAGAACAAGAAAGCAAGTCCAAACAAAACCAAACCATCAATAGCGAAAGATGGCCTGAAGAATTCAAGTAAGTCATCCAACTCTGATGTCCAGGAAAAAGTGTGCATTGAAGCCACAGAAGCACTGCCAGTTGAGCCGACACCTAAGGCTGTACCTGCAACTCAACCTACTAATGCCATCATTGAGTTGGAAGAGACTAAGCAACTCCATAGTACATCTTCCATTGAAAAGAATGAGGGAAACTTGGTGATGCAAAGAGAGGCATTAGATAAAGGAAGCTGCAATGAGCATTCACCTGCACCTATTGAAGAGAATTCTGCACAGCCTGATCAGTTAACAGCTGATGCTGAAGAATTACTTCAGGAATCTCCAGTTCTTAGTGAAGACAAAAGAAACTTCATTATTGAAGAGAGTGTAGAACCTCATATTCTGGAATCACCTACCAAACCTTCGATTGTTTCAGCTGTGAACATTGATGAAAATGGTGATATAACCAAAGGTTTTCCAGTCTCTACTGAAATTTCTGAGATAGAAATTTCTACTCCACCATATAACGAAACAGCCTCAGAACAACTCCACTCCAGGAAGAAATGGAATGGTGATGAAAACTCTCCTAAAGCTGCCAAAGGGTTTAGGAAACTTCTGTTGTTTGGACGAAAGAGCAAGAACACTCCTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015994 GO:0015995 GO:0016020 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051188 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1063

Amino Acids

118.05

Weight (kDa)

5.88

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27430 AT4G27430
fragaria_vesca	FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630
malus_domestica	MD03G1223400.v1.1 MD11G1241400.v1.1
prunus_persica	Prupe.4G186100_v2.0.a1 Prupe.4G186100_v2.0.a1
pyrus_communis	pycom03g17170 pycom11g21290 pycom11g21300
rosa_chinensis	RchiOBHm_Chr5g0034651
rosa_laevigata	RLG00000033565
rosa_multiflora	Rmu_sc0002460.1_g000082
rosa_roxburghii	Rroxscaffold_1G00045660
rosa_rugosa	Rorug05G0147400
rosa_samantha	Rh5AG239600 Rh5BG240300 Rh5CG270700 Rh5DG248500
rosa_wichuraiana	Rw5G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2812
Acc16I	TGCGCA	1 cut(s)	1465
Acc36I	ACCTGC	3 cut(s)	532, 2671, 2812
AccB1I	GGYRCC	1 cut(s)	1855
AccB7I	CCANNNNNTGG	1 cut(s)	1852
AccII	CGCG	2 cut(s)	154, 1830
AciI	CCGC	6 cut(s)	257, 464, 838, 1180, 1830, 2362
AclWI	GGATC	6 cut(s)	699, 712, 1139, 1152, 1442, 2059
AcoI	YGGCCR	3 cut(s)	449, 625, 2434
AcsI	RAATTY	8 cut(s)	175, 892, 1235, 2135, 2569, 2821, 3027, 3042
AcuI	CTGAAG	5 cut(s)	357, 675, 2585, 2852, 2877
AfaI	GTAC	7 cut(s)	48, 438, 470, 1162, 1478, 2661, 2722
AfiI	CCNNNNNNNGG	4 cut(s)	518, 1499, 1852, 2432
AflII	CTTAAG	1 cut(s)	1705
AflIII	ACRYGT	2 cut(s)	22, 525
AjiI	CACGTC	1 cut(s)	992
AjnI	CCWGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
AjuI	GAANNNNNNNTTGG	2 cut(s)	1694, 1726
AloI	GAACNNNNNNTCC	4 cut(s)	343, 375, 1998, 2030
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	967, 2327, 2696, 3022
AlwI	GGATC	6 cut(s)	699, 712, 1139, 1152, 1442, 2059
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	6 cut(s)	449, 575, 625, 2250, 2434, 2560
ApoI	RAATTY	8 cut(s)	175, 892, 1235, 2135, 2569, 2821, 3027, 3042
ArsI	GACNNNNNNTTYG	2 cut(s)	2106, 2138
Asp700I	GAANNNNTTC	1 cut(s)	2865
AspLEI	GCGC	2 cut(s)	1391, 1466
AspS9I	GGNCC	4 cut(s)	488, 1698, 1843, 2251
AsuHPI	GGTGA	7 cut(s)	989, 1961, 2767, 2793, 2937, 3005, 3119
AsuII	TTCGAA	1 cut(s)	1347
AvaII	GGWCC	3 cut(s)	488, 1698, 1843
AxyI	CCTNAGG	1 cut(s)	2652
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BalI	TGGCCA	2 cut(s)	451, 2436
BamHI	GGATCC	2 cut(s)	704, 1144
BanI	GGYRCC	1 cut(s)	1855
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	2083, 2115
BauI	CACGAG	2 cut(s)	78, 2220
BbsI	GAAGAC	3 cut(s)	8, 597, 2898
Bbv12I	GWGCWC	1 cut(s)	682
BceAI	ACGGC	1 cut(s)	612
BcgI	CGANNNNNNTGC	4 cut(s)	776, 810, 1871, 1905
BciT130I	CCWGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
BciVI	GTATCC	2 cut(s)	905, 1303
BclI	TGATCA	3 cut(s)	610, 748, 2836
BcoDI	GTCTC	4 cut(s)	967, 2327, 2696, 3022
BfaI	CTAG	4 cut(s)	365, 683, 1631, 1788
BfmI	CTRYAG	2 cut(s)	1779, 2475
BfrI	CTTAAG	1 cut(s)	1705
BfuAI	ACCTGC	3 cut(s)	532, 2671, 2812
BfuI	GTATCC	2 cut(s)	905, 1303
BglII	AGATCT	1 cut(s)	641
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
Bme18I	GGWCC	3 cut(s)	488, 1698, 1843
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	4 cut(s)	488, 1698, 1843, 2251
BmiI	GGNNCC	5 cut(s)	546, 706, 1146, 1857, 2253
BmrFI	CCNGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	5 cut(s)	400, 802, 1060, 2748, 2842
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	3 cut(s)	8, 597, 2898
BplI	GAGNNNNNCTC	4 cut(s)	1315, 1347, 2203, 2235
BpmI	CTGGAG	6 cut(s)	318, 1129, 1749, 2025, 2862, 3073
Bpu14I	TTCGAA	1 cut(s)	1347
BpuEI	CTTGAG	2 cut(s)	417, 805
BsaAI	YACGTR	1 cut(s)	943
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaI	GGTCTC	1 cut(s)	2327
BsaJI	CCNNGG	4 cut(s)	446, 532, 560, 1859
BsaXI	ACNNNNNCTCC	2 cut(s)	1998, 2028
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 1499, 1852, 2432
Bse21I	CCTNAGG	1 cut(s)	2652
Bse3DI	GCAATG	4 cut(s)	72, 243, 1552, 2797
Bse8I	GATNNNNATC	1 cut(s)	1194
BseBI	CCWGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
BseDI	CCNNGG	4 cut(s)	446, 532, 560, 1859
BseGI	GGATG	9 cut(s)	225, 415, 874, 913, 1195, 1642, 1855, 2152, 2582
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	4 cut(s)	518, 1499, 1852, 2432
BseMI	GCAATG	4 cut(s)	72, 243, 1552, 2797
BseMII	CTCAG	9 cut(s)	266, 876, 1602, 1703, 2196, 2394, 2499, 3024, 3087
BseRI	GAGGAG	1 cut(s)	2224
BseYI	CCCAGC	1 cut(s)	2254
BsgI	GTGCAG	2 cut(s)	2790, 2811
Bsh1236I	CGCG	2 cut(s)	154, 1830
BshFI	GGCC	6 cut(s)	451, 577, 627, 2252, 2436, 2562
BshNI	GGYRCC	1 cut(s)	1855
BsiHKAI	GWGCWC	1 cut(s)	682
BslFI	GGGAC	4 cut(s)	1151, 1322, 1700, 2305
BslI	CCNNNNNNNGG	4 cut(s)	518, 1499, 1852, 2432
BsmAI	GTCTC	4 cut(s)	967, 2327, 2696, 3022
BsmFI	GGGAC	4 cut(s)	1151, 1322, 1700, 2305
BsmI	GAATGC	2 cut(s)	1987, 2797
BsnI	GGCC	6 cut(s)	451, 577, 627, 2252, 2436, 2562
Bso31I	GGTCTC	1 cut(s)	2327
Bsp119I	TTCGAA	1 cut(s)	1347
Bsp1286I	GDGCHC	2 cut(s)	315, 682
Bsp1407I	TGTACA	1 cut(s)	1476
Bsp19I	CCATGG	2 cut(s)	446, 1859
Bsp68I	TCGCGA	1 cut(s)	154
BspACI	CCGC	6 cut(s)	257, 464, 838, 1180, 1830, 2362
BspANI	GGCC	6 cut(s)	451, 577, 627, 2252, 2436, 2562
BspCNI	CTCAG	9 cut(s)	265, 877, 1603, 1702, 2197, 2395, 2500, 3025, 3086
BspFNI	CGCG	2 cut(s)	154, 1830
BspHI	TCATGA	2 cut(s)	670, 1131
BspLI	GGNNCC	5 cut(s)	546, 706, 1146, 1857, 2253
BspMAI	CTGCAG	2 cut(s)	1783, 2479
BspMI	ACCTGC	3 cut(s)	532, 2671, 2812
BspPI	GGATC	6 cut(s)	699, 712, 1139, 1152, 1442, 2059
BspQI	GCTCTTC	1 cut(s)	2057
BspT104I	TTCGAA	1 cut(s)	1347
BspT107I	GGYRCC	1 cut(s)	1855
BspTI	CTTAAG	1 cut(s)	1705
BspTNI	GGTCTC	1 cut(s)	2327
BsrDI	GCAATG	4 cut(s)	72, 243, 1552, 2797
BsrGI	TGTACA	1 cut(s)	1476
BssECI	CCNNGG	4 cut(s)	446, 532, 560, 1859
BssSI	CACGAG	2 cut(s)	78, 2220
BssT1I	CCWWGG	2 cut(s)	446, 1859
Bst2BI	CACGAG	2 cut(s)	78, 2220
Bst2UI	CCWGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
Bst4CI	ACNGT	3 cut(s)	1669, 1994, 2122
Bst6I	CTCTTC	9 cut(s)	965, 1419, 2057, 2166, 2189, 2325, 2694, 2811, 2910
BstAFI	CTTAAG	1 cut(s)	1705
BstAPI	GCANNNNNTGC	2 cut(s)	472, 2504
BstAUI	TGTACA	1 cut(s)	1476
BstBAI	YACGTR	1 cut(s)	943
BstBI	TTCGAA	1 cut(s)	1347
BstC8I	GCNNGC	7 cut(s)	63, 169, 243, 1543, 1754, 1779, 1793
BstDSI	CCRYGG	2 cut(s)	446, 1859
BstF5I	GGATG	9 cut(s)	225, 415, 874, 913, 1195, 1642, 1855, 2152, 2582
BstFNI	CGCG	2 cut(s)	154, 1830
BstHHI	GCGC	2 cut(s)	1391, 1466
BstMAI	GTCTC	4 cut(s)	967, 2327, 2696, 3022
BstNI	CCWGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
BstNSI	RCATGY	4 cut(s)	171, 475, 529, 1795
BstSCI	CCNGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
BstSFI	CTRYAG	2 cut(s)	1779, 2475
BstUI	CGCG	2 cut(s)	154, 1830
BstV2I	GAAGAC	3 cut(s)	8, 597, 2898
BstX2I	RGATCY	4 cut(s)	641, 704, 1144, 2051
BstXI	CCANNNNNNTGG	1 cut(s)	447
BstYI	RGATCY	4 cut(s)	641, 704, 1144, 2051
Bsu36I	CCTNAGG	1 cut(s)	2652
BsuI	GTATCC	2 cut(s)	905, 1303
BsuRI	GGCC	6 cut(s)	451, 577, 627, 2252, 2436, 2562
BtgI	CCRYGG	2 cut(s)	446, 1859
BtgZI	GCGATG	1 cut(s)	1371
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	9 cut(s)	225, 415, 874, 913, 1195, 1642, 1855, 2152, 2582
BtsI	GCAGTG	2 cut(s)	1036, 2630
BtsIMutI	CAGTG	8 cut(s)	381, 717, 1036, 1212, 1725, 1915, 1999, 2630
BtuMI	TCGCGA	1 cut(s)	154
BveI	ACCTGC	3 cut(s)	532, 2671, 2812
Cac8I	GCNNGC	7 cut(s)	63, 169, 243, 1543, 1754, 1779, 1793
CaiI	CAGNNNCTG	1 cut(s)	380
CciI	TCATGA	2 cut(s)	670, 1131
CfoI	GCGC	2 cut(s)	1391, 1466
Cfr13I	GGNCC	4 cut(s)	488, 1698, 1843, 2251
Csp6I	GTAC	7 cut(s)	47, 437, 469, 1161, 1477, 2660, 2721
CviQI	GTAC	7 cut(s)	47, 437, 469, 1161, 1477, 2660, 2721
DraI	TTTAAA	1 cut(s)	1767
EaeI	YGGCCR	3 cut(s)	449, 625, 2434
Eam1104I	CTCTTC	9 cut(s)	965, 1419, 2057, 2166, 2189, 2325, 2694, 2811, 2910
EarI	CTCTTC	9 cut(s)	965, 1419, 2057, 2166, 2189, 2325, 2694, 2811, 2910
Eco130I	CCWWGG	2 cut(s)	446, 1859
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	2327
Eco32I	GATATC	1 cut(s)	2077
Eco47I	GGWCC	3 cut(s)	488, 1698, 1843
Eco57I	CTGAAG	5 cut(s)	357, 675, 2585, 2852, 2877
Eco81I	CCTNAGG	1 cut(s)	2652
EcoO109I	RGGNCCY	2 cut(s)	488, 2251
EcoRI	GAATTC	2 cut(s)	2569, 2821
EcoRII	CCWGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
EcoRV	GATATC	1 cut(s)	2077
EcoT14I	CCWWGG	2 cut(s)	446, 1859
EcoT22I	ATGCAT	2 cut(s)	173, 1797
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	446, 1859
FalI	AAGNNNNNCTT	2 cut(s)	2850, 2882
FaqI	GGGAC	4 cut(s)	1151, 1322, 1700, 2305
FbaI	TGATCA	3 cut(s)	610, 748, 2836
FokI	GGATG	9 cut(s)	232, 422, 881, 920, 1202, 1649, 1862, 2159, 2569
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	4 cut(s)	365, 683, 1631, 1788
FspI	TGCGCA	1 cut(s)	1465
GlaI	GCGC	2 cut(s)	1390, 1465
GsaI	CCCAGC	1 cut(s)	2258
GsuI	CTGGAG	6 cut(s)	318, 1129, 1749, 2025, 2862, 3073
HaeIII	GGCC	6 cut(s)	451, 577, 627, 2252, 2436, 2562
HhaI	GCGC	2 cut(s)	1391, 1466
Hin6I	GCGC	2 cut(s)	1389, 1464
HinP1I	GCGC	2 cut(s)	1389, 1464
HincII	GTYRAC	1 cut(s)	2844
HindII	GTYRAC	1 cut(s)	2844
HindIII	AAGCTT	2 cut(s)	1708, 2306
HpaI	GTTAAC	1 cut(s)	2844
HphI	GGTGA	7 cut(s)	989, 1961, 2767, 2793, 2937, 3005, 3119
Hpy166II	GTNNAC	5 cut(s)	362, 1843, 2125, 2844, 2977
Hpy8I	GTNNAC	5 cut(s)	362, 1843, 2125, 2844, 2977
Hpy99I	CGWCG	1 cut(s)	996
HpyAV	CCTTC	9 cut(s)	34, 421, 1343, 1493, 1971, 2109, 2242, 2488, 2967
HpyCH4III	ACNGT	3 cut(s)	1669, 1994, 2122
HpyCH4IV	ACGT	3 cut(s)	22, 942, 991
HpySE526I	ACGT	3 cut(s)	22, 942, 991
HspAI	GCGC	2 cut(s)	1389, 1464
Ksp22I	TGATCA	3 cut(s)	610, 748, 2836
KspAI	GTTAAC	1 cut(s)	2844
LguI	GCTCTTC	1 cut(s)	2057
LmnI	GCTCC	2 cut(s)	146, 1730
LweI	GCATC	5 cut(s)	400, 802, 1060, 2748, 2842
MaeI	CTAG	4 cut(s)	365, 683, 1631, 1788
MaeII	ACGT	3 cut(s)	22, 942, 991
MaeIII	GTNAC	4 cut(s)	521, 995, 1258, 2398
MfeI	CAATTG	1 cut(s)	3187
MflI	RGATCY	4 cut(s)	641, 704, 1144, 2051
MhlI	GDGCHC	2 cut(s)	315, 682
MlsI	TGGCCA	2 cut(s)	451, 2436
MluNI	TGGCCA	2 cut(s)	451, 2436
MlyI	GAGTC	2 cut(s)	587, 1436
MmeI	TCCRAC	5 cut(s)	611, 732, 2042, 2610, 2676
Mox20I	TGGCCA	2 cut(s)	451, 2436
Mph1103I	ATGCAT	2 cut(s)	173, 1797
MroXI	GAANNNNTTC	1 cut(s)	2865
MscI	TGGCCA	2 cut(s)	451, 2436
MslI	CAYNNNNRTG	2 cut(s)	669, 1029
Msp20I	TGGCCA	2 cut(s)	451, 2436
MspA1I	CMGCKG	5 cut(s)	1838, 2480, 2501, 2849, 2972
MspCI	CTTAAG	1 cut(s)	1705
MspR9I	CCNGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
MunI	CAATTG	1 cut(s)	3187
Mva1269I	GAATGC	2 cut(s)	1987, 2797
MvaI	CCWGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
MvnI	CGCG	2 cut(s)	154, 1830
NcoI	CCATGG	2 cut(s)	446, 1859
NlaIV	GGNNCC	5 cut(s)	546, 706, 1146, 1857, 2253
NmeAIII	GCCGAG	1 cut(s)	2451
NmuCI	GTSAC	1 cut(s)	995
NruI	TCGCGA	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	1465
NsiI	ATGCAT	2 cut(s)	173, 1797
NspI	RCATGY	4 cut(s)	171, 475, 529, 1795
NspV	TTCGAA	1 cut(s)	1347
PaeI	GCATGC	2 cut(s)	171, 1795
PagI	TCATGA	2 cut(s)	670, 1131
PaqCI	CACCTGC	1 cut(s)	2812
PciI	ACATGT	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	2057
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 1353
PctI	GAATGC	2 cut(s)	1987, 2797
PdmI	GAANNNNTTC	1 cut(s)	2865
PflMI	CCANNNNNTGG	1 cut(s)	1852
PfoI	TCCNGGA	3 cut(s)	2002, 2598, 3089
PleI	GAGTC	2 cut(s)	587, 1435
PpsI	GAGTC	2 cut(s)	587, 1435
Ppu21I	YACGTR	1 cut(s)	943
PpuMI	RGGWCCY	1 cut(s)	488
PscI	ACATGT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
PspFI	CCCAGC	1 cut(s)	2254
PspGI	CCWGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
PspN4I	GGNNCC	5 cut(s)	546, 706, 1146, 1857, 2253
PspPI	GGNCC	4 cut(s)	488, 1698, 1843, 2251
PspPPI	RGGWCCY	1 cut(s)	488
PstI	CTGCAG	2 cut(s)	1783, 2479
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	4 cut(s)	641, 704, 1144, 2051
PvuII	CAGCTG	5 cut(s)	1838, 2480, 2501, 2849, 2972
RruI	TCGCGA	1 cut(s)	154
RsaI	GTAC	7 cut(s)	48, 438, 470, 1162, 1478, 2661, 2722
RsaNI	GTAC	7 cut(s)	47, 437, 469, 1161, 1477, 2660, 2721
RseI	CAYNNNNRTG	2 cut(s)	669, 1029
SapI	GCTCTTC	1 cut(s)	2057
Sau96I	GGNCC	4 cut(s)	488, 1698, 1843, 2251
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	2 cut(s)	587, 1436
ScrFI	CCNGG	8 cut(s)	534, 561, 1244, 1847, 1923, 2004, 2600, 3091
SduI	GDGCHC	2 cut(s)	315, 682
SfaNI	GCATC	5 cut(s)	400, 802, 1060, 2748, 2842
SfcI	CTRYAG	2 cut(s)	1779, 2475
SfuI	TTCGAA	1 cut(s)	1347
SinI	GGWCC	3 cut(s)	488, 1698, 1843
SmiMI	CAYNNNNRTG	2 cut(s)	669, 1029
SmlI	CTYRAG	3 cut(s)	432, 820, 1705
SmoI	CTYRAG	3 cut(s)	432, 820, 1705
SphI	GCATGC	2 cut(s)	171, 1795
SsiI	CCGC	6 cut(s)	257, 464, 838, 1180, 1830, 2362
SspMI	CTAG	4 cut(s)	365, 683, 1631, 1788
StyD4I	CCNGG	8 cut(s)	532, 559, 1242, 1845, 1921, 2002, 2598, 3089
StyI	CCWWGG	2 cut(s)	446, 1859
TaaI	ACNGT	3 cut(s)	1669, 1994, 2122
TaiI	ACGT	3 cut(s)	25, 945, 994
TaqI	TCGA	2 cut(s)	1347, 2960
TaqII	GACCGA	1 cut(s)	1674
TatI	WGTACW	5 cut(s)	46, 468, 1160, 1476, 2720
TauI	GCSGC	1 cut(s)	259
TscAI	CASTG	8 cut(s)	381, 724, 1036, 1219, 1732, 1915, 1999, 2637
TseFI	GTSAC	1 cut(s)	995
Tsp45I	GTSAC	1 cut(s)	995
TspRI	CASTG	8 cut(s)	381, 724, 1036, 1219, 1732, 1915, 1999, 2637
Van91I	CCANNNNNTGG	1 cut(s)	1852
Vha464I	CTTAAG	1 cut(s)	1705
VpaK11BI	GGWCC	3 cut(s)	488, 1698, 1843
XapI	RAATTY	8 cut(s)	175, 892, 1235, 2135, 2569, 2821, 3027, 3042
XceI	RCATGY	4 cut(s)	171, 475, 529, 1795
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1007, 2692
XmnI	GAANNNNTTC	1 cut(s)	2865
XspI	CTAG	4 cut(s)	365, 683, 1631, 1788
ZrmI	AGTACT	1 cut(s)	48
Zsp2I	ATGCAT	2 cut(s)	173, 1797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.