Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Forward (+)

7917852 .. 7919263

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1066800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAACCGGAGAACATTGACTGGAGCAGCATAGAATCCGTGTTCGTCGAAGATGAAACTTACGAGAACTTCGAAGCGCCTAAGTGGGTCGACCTCTCTTCCCCAGATGAGCTCATGGATGATGATCAAGACTGGTTCTGCACTCCTGATTGCAAGCATTCGAAGGCTGCTGAAGATTTTGTTAAACCGGCACGTAATCTGAAGGTGAAGCTTATGAGATCTTTAACCATTTCTGAAATCCTTCCTTTTAGGGAAAGGAATCGAAGGGATATGAAAGCAAAACGGACAAATTTACCAAATATGAAGAACGAAAATTCGAATTCTTTTAGCAATGTCCATGAAGAAAGTGAGAACAAGAATCCCAATATCCCAGCTTCGATTCCGCGTTGCAAAACCAAATCAAAGAAAGCTGCAGTGAATCCAAGCAGTGAGAAGAAGAAACAAGTTGATGAGTCGTCATTTCAAGATTCATCAAAAAATGGGAGGAAGCCGCGGCTAAAGACTACATTCTCCGCGAGTAATTTGCTTGGCGGGCGCGAAATCTTGAATCAAATCACAGAATTTTGTACTGAATTGAAGAAATTGGCACGAAGGGGTTCGAGAAAAGGTCGAAGAGAGGGAGGTAGTTTGAAGAAGGAAAGCGTTAGAGAAAGGATGCCTCTACTTGTTAAGGAAGCGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.21

Weight (kDa)

9.27

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	4 cut(s)	385, 493, 515, 537
AciI	CCGC	5 cut(s)	383, 491, 493, 513, 531
AcsI	RAATTY	4 cut(s)	289, 313, 319, 560
AcuI	CTGAAG	2 cut(s)	192, 221
AfaI	GTAC	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	464, 547, 577, 631
AluBI	AGCT	4 cut(s)	112, 211, 374, 410
AluI	AGCT	4 cut(s)	112, 211, 374, 410
Alw21I	GWGCWC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	27, 167, 410
ApoI	RAATTY	4 cut(s)	289, 313, 319, 560
Asp700I	GAANNNNTTC	2 cut(s)	240, 595
AspLEI	GCGC	2 cut(s)	79, 537
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	3 cut(s)	72, 161, 317
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	39, 154, 397
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BclI	TGATCA	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	80
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	5 cut(s)	28, 168, 411, 491, 494
BlsI	GCNGC	5 cut(s)	29, 169, 412, 492, 495
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	3 cut(s)	72, 161, 317
BsaAI	YACGTR	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	7
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	26, 137
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	2 cut(s)	124, 660
BseJI	GATNNNNATC	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	26, 137
BseXI	GCAGC	3 cut(s)	39, 154, 397
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	124
Bsh1236I	CGCG	4 cut(s)	385, 493, 515, 537
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	8, 188
BsmI	GAATGC	1 cut(s)	157
Bsp119I	TTCGAA	3 cut(s)	72, 161, 317
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	124, 218
BspACI	CCGC	5 cut(s)	383, 491, 493, 513, 531
BspFNI	CGCG	4 cut(s)	385, 493, 515, 537
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	415
BspT104I	TTCGAA	3 cut(s)	72, 161, 317
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	26, 137
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	2 cut(s)	124, 218
Bst6I	CTCTTC	2 cut(s)	103, 607
BstBAI	YACGTR	1 cut(s)	194
BstBI	TTCGAA	3 cut(s)	72, 161, 317
BstC8I	GCNNGC	2 cut(s)	155, 533
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	124, 660
BstFNI	CGCG	4 cut(s)	385, 493, 515, 537
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 537
BstKTI	GATC	2 cut(s)	127, 221
BstMBI	GATC	2 cut(s)	124, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	4 cut(s)	385, 493, 515, 537
BstV1I	GCAGC	3 cut(s)	39, 154, 397
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	2 cut(s)	124, 660
BtsI	GCAGTG	2 cut(s)	420, 433
BtsIMutI	CAGTG	2 cut(s)	420, 433
Cac8I	GCNNGC	2 cut(s)	155, 533
CfoI	GCGC	2 cut(s)	79, 537
Cfr10I	RCCGGY	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	2 cut(s)	115, 338
CviJI	RGCY	7 cut(s)	112, 167, 211, 374, 410, 490, 496
CviKI_1	RGCY	7 cut(s)	112, 167, 211, 374, 410, 490, 496
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	126, 220
DpnII	GATC	2 cut(s)	124, 218
Eam1104I	CTCTTC	2 cut(s)	103, 607
EarI	CTCTTC	2 cut(s)	103, 607
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	192, 221
EcoICRI	GAGCTC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	2 cut(s)	118, 341
FaiI	YATR	6 cut(s)	32, 116, 215, 272, 302, 339
FatI	CATG	2 cut(s)	114, 337
FauI	CCCGC	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	28, 168, 411, 491, 494
FokI	GGATG	2 cut(s)	131, 667
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	28, 168, 411, 491, 494
GlaI	GCGC	2 cut(s)	78, 536
GluI	GCNGC	5 cut(s)	28, 168, 411, 491, 494
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	80
HapII	CCGG	2 cut(s)	8, 188
HhaI	GCGC	2 cut(s)	79, 537
Hin1II	CATG	2 cut(s)	118, 341
Hin6I	GCGC	2 cut(s)	77, 535
HinP1I	GCGC	2 cut(s)	77, 535
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	8 cut(s)	35, 259, 358, 379, 418, 452, 467, 547
HpaII	CCGG	2 cut(s)	8, 188
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	201, 235
Hpy188III	TCNNGA	5 cut(s)	128, 146, 464, 544, 600
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	157, 196, 251, 258, 585, 628
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	141, 153, 390, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	118, 341
HspAI	GCGC	2 cut(s)	77, 535
Ksp22I	TGATCA	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	124, 218
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	7 cut(s)	7, 21, 117, 118, 159, 201, 384
Lsp1109I	GCAGC	3 cut(s)	39, 154, 397
LweI	GCATC	1 cut(s)	645
MaeII	ACGT	1 cut(s)	193
MalI	GATC	2 cut(s)	126, 220
MboI	GATC	2 cut(s)	124, 218
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	7 cut(s)	289, 313, 319, 520, 560, 572, 581
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	5 cut(s)	104, 477, 610, 614, 669
MroXI	GAANNNNTTC	2 cut(s)	240, 595
MseI	TTAA	3 cut(s)	183, 224, 669
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	2 cut(s)	8, 188
Mva1269I	GAATGC	1 cut(s)	157
MvnI	CGCG	4 cut(s)	385, 493, 515, 537
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeII	GATC	2 cut(s)	124, 218
NlaIII	CATG	2 cut(s)	118, 341
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	3 cut(s)	72, 161, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	240, 595
PfeI	GAWTC	7 cut(s)	35, 259, 358, 379, 418, 467, 547
PkrI	GCNGC	5 cut(s)	29, 169, 412, 492, 495
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	114
SacII	CCGCGG	1 cut(s)	494
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	183, 224, 669
SatI	GCNGC	5 cut(s)	28, 168, 411, 491, 494
Sau3AI	GATC	2 cut(s)	124, 218
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	96, 114, 196, 207, 213, 376, 412, 610, 625
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	494
SfuI	TTCGAA	3 cut(s)	72, 161, 317
SgrBI	CCGCGG	1 cut(s)	494
Sse9I	AATT	7 cut(s)	289, 313, 319, 520, 560, 572, 581
SsiI	CCGC	5 cut(s)	383, 491, 493, 513, 531
SstI	GAGCTC	1 cut(s)	114
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	9 cut(s)	48, 72, 90, 161, 262, 317, 377, 599, 610
TasI	AATT	7 cut(s)	289, 313, 319, 520, 560, 572, 581
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	493, 496
TfiI	GAWTC	7 cut(s)	35, 259, 358, 379, 418, 467, 547
Tru1I	TTAA	3 cut(s)	183, 224, 669
Tru9I	TTAA	3 cut(s)	183, 224, 669
TscAI	CASTG	2 cut(s)	420, 433
TseI	GCWGC	3 cut(s)	27, 167, 410
TspDTI	ATGAA	5 cut(s)	69, 287, 317, 354, 459
TspGWI	ACGGA	2 cut(s)	28, 298
TspRI	CASTG	2 cut(s)	420, 433
XapI	RAATTY	4 cut(s)	289, 313, 319, 560
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	2 cut(s)	240, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.