Prupe.7G067300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014767
Physical Location & Seq
Reverse (-)
10524477 .. 10526213
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G067300.1

Sequence Viewer

Length: 708 bp
ATGGACCCAGAAAACATTGATTGGGGCAGCATAGAATCTGTGTTCGTCGAAGATGAGACGTACGAGAACTTCGAAGCGCCTAAGTGGGTCGACCTCTCCAGCCCAGATGAGCTCATTGGCGATGAAGCCTGGTTCTGCGGTCCTGATTGCAACCATCCGAAGGCGACTGAGGATTTTCTCAAATCAGCACGTAATCTAAAGGTGAAGCTTCTAAGATCTTTATCCATTTCTGAAATCCTTCCTTTTAGGGAAAGGAATCGGAGAGATGTGAAGGTAAAACGGGTAGAAATCAAACCACCTTTAGCTGCAGCAGAGTTTCCCGAGACGAAAACCGAAAATTTGAATTCTTTATGCAATGTGTACGAAGAGAGTGAGAACAAGAATCCCAACTTCCCACCTCCGGTTCCGCTTTCGAAAACCAAAACAACGAAGGCTCCAATGAATCCAAGCAATGTGAAGAAGAAAGCAGTGGATGAATCATCTCATGGTTCATCAAATTTTGGTAGGAAACCGCAGCTAAAGAGTACTTTCTCCGCCAGTAATTTACTTGGCGGGCGGGCAATGTTGAATCAAATCACGGAATTTTGTGCGGAATTGAAGAAATTGGCAAGACGGGGTTCGAGAAAAGGTGGATCATCTGAGAAACTTGGTTTGAAGGAGAGGGTTAGAGAGAGGATCCCTCTGATTGTTAGAGAAGGGAAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.46

Weight (kDa)

8.95

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 7 cut(s) 138, 407, 512, 534, 552, 556, 590
AclWI GGATC 3 cut(s) 640, 670, 683
AcsI RAATTY 4 cut(s) 337, 343, 496, 581
AfaI GTAC 3 cut(s) 62, 362, 526
AfiI CCNNNNNNNGG 2 cut(s) 160, 400
AgsI TTSAA 4 cut(s) 343, 568, 598, 655
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 4 cut(s) 112, 208, 305, 517
AluI AGCT 4 cut(s) 112, 208, 305, 517
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 50, 317
AlwI GGATC 3 cut(s) 640, 670, 683
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 4 cut(s) 27, 305, 308, 514
ApoI RAATTY 4 cut(s) 337, 343, 496, 581
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 4, 140
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 2 cut(s) 72, 413
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 4, 140
BamHI GGATCC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 114
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 4 cut(s) 39, 292, 320, 526
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 50, 317
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 80
BglII AGATCT 1 cut(s) 215
BisI GCNGC 4 cut(s) 28, 306, 309, 515
BlsI GCNGC 4 cut(s) 29, 307, 310, 516
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 4, 140
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 4, 140
BmiI GGNNCC 4 cut(s) 6, 405, 435, 677
BmrFI CCNGG 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpmI CTGGAG 1 cut(s) 82
Bpu14I TTCGAA 2 cut(s) 72, 413
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 400
Bse1I ACTGG 1 cut(s) 537
Bse3DI GCAATG 3 cut(s) 361, 457, 567
Bse8I GATNNNNATC 1 cut(s) 220
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 154, 478
BseJI GATNNNNATC 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 160, 400
BseMI GCAATG 3 cut(s) 361, 457, 567
BseMII CTCAG 2 cut(s) 159, 630
BseNI ACTGG 1 cut(s) 537
BseXI GCAGC 4 cut(s) 39, 292, 320, 526
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 401
BsiWI CGTACG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 160, 400
BsmAI GTCTC 2 cut(s) 50, 317
BsmBI CGTCTC 2 cut(s) 50, 317
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 2 cut(s) 72, 413
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 215, 632, 675
BspACI CCGC 7 cut(s) 138, 407, 512, 534, 552, 556, 590
BspCNI CTCAG 2 cut(s) 160, 631
BspLI GGNNCC 4 cut(s) 6, 405, 435, 677
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 3 cut(s) 640, 670, 683
BspT104I TTCGAA 2 cut(s) 72, 413
BsrDI GCAATG 3 cut(s) 361, 457, 567
BsrI ACTGG 1 cut(s) 537
BssMI GATC 3 cut(s) 215, 632, 675
Bst2UI CCWGG 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 191
BstBI TTCGAA 2 cut(s) 72, 413
BstC8I GCNNGC 2 cut(s) 554, 558
BstDEI CTNAG 4 cut(s) 81, 168, 212, 639
BstF5I GGATG 2 cut(s) 154, 478
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 218, 635, 678
BstMAI GTCTC 2 cut(s) 50, 317
BstMBI GATC 3 cut(s) 215, 632, 675
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 39, 292, 320, 526
BstX2I RGATCY 2 cut(s) 215, 675
BstYI RGATCY 2 cut(s) 215, 675
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 154, 478
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 554, 558
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 4, 140
Csp6I GTAC 3 cut(s) 61, 361, 525
CviAII CATG 1 cut(s) 485
CviJI RGCY 7 cut(s) 102, 112, 128, 208, 305, 434, 517
CviKI_1 RGCY 7 cut(s) 102, 112, 128, 208, 305, 434, 517
CviQI GTAC 3 cut(s) 61, 361, 525
DdeI CTNAG 4 cut(s) 81, 168, 212, 639
DpnI GATC 3 cut(s) 217, 634, 677
DpnII GATC 3 cut(s) 215, 632, 675
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 523
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 4, 140
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 2 cut(s) 50, 317
FaeI CATG 1 cut(s) 488
FaiI YATR 3 cut(s) 32, 352, 486
FatI CATG 1 cut(s) 484
FauI CCCGC 2 cut(s) 545, 549
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 28, 306, 309, 515
FokI GGATG 2 cut(s) 141, 485
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 28, 306, 309, 515
GlaI GCGC 1 cut(s) 78
GluI GCNGC 4 cut(s) 28, 306, 309, 515
GsuI CTGGAG 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 80
HapII CCGG 1 cut(s) 401
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 488
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 6 cut(s) 35, 256, 382, 442, 476, 568
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 91, 361
Hpy188I TCNGA 5 cut(s) 159, 232, 261, 640, 684
Hpy188III TCNNGA 3 cut(s) 143, 320, 621
Hpy8I GTNNAC 2 cut(s) 91, 361
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 7 cut(s) 154, 248, 265, 424, 649, 689, 694
HpyCH4IV ACGT 2 cut(s) 59, 190
HpyCH4V TGCA 3 cut(s) 150, 308, 354
HpyF3I CTNAG 4 cut(s) 81, 168, 212, 639
HpySE526I ACGT 2 cut(s) 59, 190
Hsp92II CATG 1 cut(s) 488
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 215, 632, 675
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 8 cut(s) 21, 112, 115, 117, 142, 156, 414, 550
Lsp1109I GCAGC 4 cut(s) 39, 292, 320, 526
MaeII ACGT 2 cut(s) 59, 190
MalI GATC 3 cut(s) 217, 634, 677
MboI GATC 3 cut(s) 215, 632, 675
MboII GAAGA 5 cut(s) 62, 377, 469, 472, 610
MflI RGATCY 2 cut(s) 215, 675
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 7 cut(s) 337, 343, 496, 541, 581, 593, 602
MnlI CCTC 6 cut(s) 104, 163, 408, 654, 666, 690
MroXI GAANNNNTTC 1 cut(s) 237
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
NdeII GATC 3 cut(s) 215, 632, 675
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 4 cut(s) 6, 405, 435, 677
NspV TTCGAA 2 cut(s) 72, 413
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 6 cut(s) 35, 256, 382, 442, 476, 568
Pfl23II CGTACG 1 cut(s) 60
PkrI GCNGC 4 cut(s) 29, 307, 310, 516
Ppu21I YACGTR 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 6, 405, 435, 677
PspPI GGNCC 2 cut(s) 4, 140
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 2 cut(s) 215, 675
RsaI GTAC 3 cut(s) 62, 362, 526
RsaNI GTAC 3 cut(s) 61, 361, 525
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 4 cut(s) 28, 306, 309, 515
Sau3AI GATC 3 cut(s) 215, 632, 675
Sau96I GGNCC 2 cut(s) 4, 140
ScaI AGTACT 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 2 cut(s) 72, 413
SinI GGWCC 2 cut(s) 4, 140
Sse9I AATT 7 cut(s) 337, 343, 496, 541, 581, 593, 602
SsiI CCGC 7 cut(s) 138, 407, 512, 534, 552, 556, 590
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 128
TaiI ACGT 2 cut(s) 62, 193
TaqI TCGA 5 cut(s) 48, 72, 90, 413, 620
TasI AATT 7 cut(s) 337, 343, 496, 541, 581, 593, 602
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 6 cut(s) 35, 256, 382, 442, 476, 568
TscAI CASTG 1 cut(s) 474
TseI GCWGC 4 cut(s) 27, 305, 308, 514
TspDTI ATGAA 4 cut(s) 138, 455, 480, 489
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 4, 140
XapI RAATTY 4 cut(s) 337, 343, 496, 581
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.