Rw3G021480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014767
Physical Location & Seq
Forward (+)
25990699 .. 25991753
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021480.1

Sequence Viewer

Length: 711 bp
ATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCGATATTCGTCGAAGATGAAACTTACGAGAACTTCAAAGCGCCCAAATGGGTCGACCTTTCTGCCCAAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCCGCTGAAGATTTCCACAAATCAGCACGTAGTCTAAAGGGGAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATCTTACCTTCTAGGGGAAAGAGTCAAAGGGATGTGAAGCTAAAAGGGGTAGAAACCAAACCACCTTCAGCTGCAAAGCTACGTAATATGAAGACCAATAGTTCAAATTATGTGTGCAGTGTCAATGACGAAAGTGAGAACAAGAATCCTAATATGGCTGCCCCACTTCCAATTGCGCCTTGCAAGTCCAAATCAAGAAAGGCATCAATGACTCCATGTAGTGAGAAGAAGAAACAAGGGGATGAGTCGTCTCAAGATTCATCAAAACACGATGGTGTGAAACCGAAGCTGAAGAGTACATTCTCAGCCAGTAATTTGCTCAAGGGACGGGAAATTTTGAATCAAATCACCGAATTCTTTACCGACATGAAGAATTTGACCAATAGGTGTTCAAGAAAAAAGACATTAGAGAATAGTTGCTTGAAGGAGAAAGTATGGGAGAGAATGCCTCTAATTGTTAGAGAAGGTGACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.76

Weight (kDa)

8.94

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 165
AcsI RAATTY 3 cut(s) 567, 587, 607
AcuI CTGAAG 3 cut(s) 189, 285, 545
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 5 cut(s) 73, 339, 574, 627, 658
AjnI CCWGG 1 cut(s) 128
AleI CACNNNNGTG 1 cut(s) 507
AluBI AGCT 6 cut(s) 112, 208, 274, 305, 313, 523
AluI AGCT 6 cut(s) 112, 208, 274, 305, 313, 523
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 305, 392
ApoI RAATTY 3 cut(s) 567, 587, 607
AspLEI GCGC 2 cut(s) 79, 412
AsuHPI GGTGA 1 cut(s) 574
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 292, 379
BccI CCATC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 2 cut(s) 306, 393
BlsI GCNGC 2 cut(s) 307, 394
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 163, 446
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpuEI CTTGAG 2 cut(s) 471, 539
Bsa29I ATCGAT 1 cut(s) 38
BsaAI YACGTR 2 cut(s) 191, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 130
BseCI ATCGAT 1 cut(s) 38
BseGI GGATG 3 cut(s) 154, 271, 481
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 203, 552
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 2 cut(s) 292, 379
BsgI GTGCAG 1 cut(s) 370
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 114
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 204, 551
BspDI ATCGAT 1 cut(s) 38
BsrI ACTGG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 521
BstBAI YACGTR 2 cut(s) 191, 317
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 212, 538
BstF5I GGATG 3 cut(s) 154, 271, 481
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 412
BstMAI GTCTC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSNI TACGTA 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 292, 379
BstV2I GAAGAC 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 3 cut(s) 154, 271, 481
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 2 cut(s) 79, 412
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 1 cut(s) 531
CviAII CATG 2 cut(s) 450, 601
CviJI RGCY 9 cut(s) 112, 128, 208, 274, 305, 313, 392, 523, 542
CviKI_1 RGCY 9 cut(s) 112, 128, 208, 274, 305, 313, 392, 523, 542
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 2 cut(s) 212, 538
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 189, 285, 545
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 453, 604
FaiI YATR 7 cut(s) 32, 323, 345, 389, 451, 602, 670
FaqI GGGAC 1 cut(s) 573
FatI CATG 2 cut(s) 449, 600
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 306, 393
FokI GGATG 3 cut(s) 141, 278, 488
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 306, 393
FspBI CTAG 1 cut(s) 246
GlaI GCGC 2 cut(s) 78, 411
GluI GCNGC 2 cut(s) 306, 393
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 2 cut(s) 79, 412
Hin1II CATG 2 cut(s) 453, 604
Hin6I GCGC 2 cut(s) 77, 410
HinP1I GCGC 2 cut(s) 77, 410
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 7 cut(s) 35, 256, 379, 445, 479, 491, 574
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 213, 232
Hpy188III TCNNGA 4 cut(s) 143, 429, 488, 627
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 252, 309, 652, 692
HpyCH4IV ACGT 2 cut(s) 190, 316
HpyCH4V TGCA 5 cut(s) 138, 150, 308, 351, 417
HpyF3I CTNAG 2 cut(s) 212, 538
HpySE526I ACGT 2 cut(s) 190, 316
Hsp92II CATG 2 cut(s) 453, 604
HspAI GCGC 2 cut(s) 77, 410
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 21, 115, 142, 156, 556
Lsp1109I GCAGC 2 cut(s) 292, 379
LweI GCATC 2 cut(s) 163, 446
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 190, 316
MaeIII GTNAC 1 cut(s) 701
MboII GAAGA 7 cut(s) 62, 182, 337, 472, 475, 538, 616
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 7 cut(s) 340, 405, 547, 567, 587, 607, 687
MlyI GAGTC 3 cut(s) 265, 439, 488
MnlI CCTC 2 cut(s) 207, 693
MseI TTAA 1 cut(s) 709
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 167, 305
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 130
NlaIII CATG 2 cut(s) 453, 604
NmuCI GTSAC 1 cut(s) 701
OliI CACNNNNGTG 1 cut(s) 507
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 4 cut(s) 35, 379, 491, 574
PkrI GCNGC 2 cut(s) 307, 394
PleI GAGTC 3 cut(s) 264, 439, 487
PpsI GAGTC 3 cut(s) 264, 439, 487
Ppu21I YACGTR 2 cut(s) 191, 317
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 709
SatI GCNGC 2 cut(s) 306, 393
SchI GAGTC 3 cut(s) 265, 439, 488
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 163, 446
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 486, 554
SmoI CTYRAG 2 cut(s) 486, 554
SnaBI TACGTA 1 cut(s) 317
Sse9I AATT 7 cut(s) 340, 405, 547, 567, 587, 607, 687
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 128
TaiI ACGT 2 cut(s) 193, 319
TaqI TCGA 3 cut(s) 38, 48, 90
TasI AATT 7 cut(s) 340, 405, 547, 567, 587, 607, 687
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 4 cut(s) 35, 379, 491, 574
Tru1I TTAA 1 cut(s) 709
Tru9I TTAA 1 cut(s) 709
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 2 cut(s) 305, 392
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 6 cut(s) 17, 69, 138, 338, 483, 617
TspRI CASTG 1 cut(s) 358
XapI RAATTY 3 cut(s) 567, 587, 607
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.