Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Forward (+)

27062383 .. 27063800

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCCATATTCGTCGAAGATGAAACTTACGAGAACTTCAAAGCGCCCAAATGGGTCGACCTTTCAGCCCCAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCGGCCGAAAATTTCCACAAATCAGCACGAAGTCTGAAGGGGAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATATTACCTTTTAGGGGAAAGAGTCAAAGGGATGTGAAGCTAAAAGGAGTAGAAACCAAACCACCCTCAGCTGCAAAGCTACGTAATATGAAGACCAAAAGTTCAAATTATGCGTGCAGTGTCAATGACGAAAGTGAGAACAAGAATCCTAATATGGCTGCTCCACTTCCAATTGCGCCTTGCAAGTCCAAATCAAGAAAGGCATCAATGACTCCATGTAATGATAAAAGGAAACAAGGGGATGAGTCGTCTCAAGATTCATCAAAACACGGTGTGAAACCGAAGCTGAAGAGTACATTCTCAGCCAGTAATTTGCTCAAGGGACCGGAAATTTTGAATCAAATCACCGAATTCTTTACCGATATGAAGAATTTGACCAAAAGGTGTTCAAGAAAAAAGACATTAGAGAATAGTTGCTTGAAGGAGAAAGTAAGGGAGAGAATGCCTCTAATTGTTAGAGAAGGTGACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.63

Weight (kDa)

9.27

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	172, 564, 584, 604
AcuI	CTGAAG	2 cut(s)	218, 542
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	73, 339, 571, 624, 655
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	6 cut(s)	112, 208, 274, 305, 313, 520
AluI	AGCT	6 cut(s)	112, 208, 274, 305, 313, 520
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	305, 392
ApoI	RAATTY	4 cut(s)	172, 564, 584, 604
AspLEI	GCGC	2 cut(s)	79, 412
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	292, 379
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	306, 393
BlsI	GCNGC	2 cut(s)	307, 394
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	163, 446
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
Bpu10I	CCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	2 cut(s)	471, 536
BsaAI	YACGTR	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	154, 271, 481
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	3 cut(s)	203, 315, 549
BseNI	ACTGG	1 cut(s)	540
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	292, 379
BsgI	GTGCAG	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	204, 314, 548
BspLI	GGNNCC	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	152, 349
BstDEI	CTNAG	3 cut(s)	212, 301, 535
BstF5I	GGATG	3 cut(s)	154, 271, 481
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 412
BstMAI	GTCTC	1 cut(s)	489
BstMCI	CGRYCG	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSNI	TACGTA	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	292, 379
BstV2I	GAAGAC	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	154, 271, 481
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	152, 349
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	2 cut(s)	79, 412
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	1 cut(s)	450
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	3 cut(s)	212, 301, 535
DraIII	CACNNNGTG	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	557
Eco52I	CGGCCG	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	218, 542
EcoICRI	GAGCTC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	1 cut(s)	453
FaiI	YATR	7 cut(s)	32, 41, 323, 345, 389, 451, 599
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	306, 393
FokI	GGATG	3 cut(s)	141, 278, 488
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	306, 393
GlaI	GCGC	2 cut(s)	78, 411
GluI	GCNGC	2 cut(s)	306, 393
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	560
HhaI	GCGC	2 cut(s)	79, 412
Hin1II	CATG	1 cut(s)	453
Hin6I	GCGC	2 cut(s)	77, 410
HinP1I	GCGC	2 cut(s)	77, 410
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	7 cut(s)	35, 256, 379, 445, 479, 491, 571
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	198, 213, 232
Hpy188III	TCNNGA	4 cut(s)	143, 429, 488, 624
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	193, 649, 689
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	138, 150, 308, 351, 417
HpyF3I	CTNAG	3 cut(s)	212, 301, 535
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	453
HspAI	GCGC	2 cut(s)	77, 410
LmnI	GCTCC	2 cut(s)	24, 400
LpnPI	CCDG	7 cut(s)	21, 115, 117, 142, 156, 553, 573
Lsp1109I	GCAGC	2 cut(s)	292, 379
LweI	GCATC	2 cut(s)	163, 446
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	698
MboII	GAAGA	4 cut(s)	62, 337, 535, 613
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	8 cut(s)	172, 340, 405, 544, 564, 584, 604, 684
MlyI	GAGTC	3 cut(s)	265, 439, 488
MnlI	CCTC	3 cut(s)	207, 310, 690
MseI	TTAA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	130
NlaIII	CATG	1 cut(s)	453
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	698
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	35, 379, 491, 571
PkrI	GCNGC	2 cut(s)	307, 394
PleI	GAGTC	3 cut(s)	264, 439, 487
PpsI	GAGTC	3 cut(s)	264, 439, 487
Ppu21I	YACGTR	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	2 cut(s)	306, 393
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	3 cut(s)	265, 439, 488
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	163, 446
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	486, 551
SmoI	CTYRAG	2 cut(s)	486, 551
SnaBI	TACGTA	1 cut(s)	317
Sse9I	AATT	8 cut(s)	172, 340, 405, 544, 564, 584, 604, 684
SspI	AATATT	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	48, 90
TasI	AATT	8 cut(s)	172, 340, 405, 544, 564, 584, 604, 684
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	4 cut(s)	35, 379, 491, 571
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	305, 392
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	6 cut(s)	17, 69, 138, 338, 483, 614
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	4 cut(s)	172, 564, 584, 604
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.