Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Reverse (-)

23370381 .. 23373294

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTGACCTCTTCTTTCCTCTCAAGCTTCAAATACTCAGACAATCTCACAGTCCAGACCAAGGCCAAGAAGATCGATTGCGTCGAGGCCAGCCTCAAGGAGTGTAGCCGCGACCTCTTGCTCTTCCAGTTCAAGTCCGGCGCCGTCGTCTTGCTTGTCTCTTTCCCCGTTGCTGAATTTCGGCCGCCATCTTGTTCTATAACGGTATTGGGTATGGGTACCCCAAGAAGAAAGATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCCATATTAGTCGAAGATGAAACTTACGAGAACTTCCAAGCGCCCAAATGGGTCGACCTTTCTGCCCCAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCGGCTGAAGATTTCCACAAATCAGCACGTAGTCTAAAGGGGAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATCTTACCTTTTAGGGGAAACAGTCAAAGGGATGTGAAGCTAAAAGGGGTAGAAACCAAACCACCTTCAGCTGCAAAGCTACGTAATATGAAGACCAAAAGTTCAAATTATGTGTGCAGTGTCAATGATGAAAGTGAGAACAAGAATCCTAATATGGCTGCTCCACTTCCAATTGCGCCCTGCAAGTCCAAATCAAGAAAGGCATCAATGACTCCATGTAATGAGAAGAAGAAACAAGGGGATGAGTCGTCTCAAGATTCATCAAAACACAGTATGAAACCAAAGCTGAAGAGTACATTCTCAGCCAGTAATTTGCTGAAGAGACAGGAAATTTTGAATCAAATCACCGAATTCTGTACCAATATGAAGAATTTGGCCAAAAGGTGTTCAAGAAAACAGACATTAGAGAATAGTTGCTTGAAGGAGAAAGTAAGGGAGAGAATGCCTCTAATTGTTAGAGAAGGTGACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.3

Weight (kDa)

9.24

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	140, 218
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	109, 185
AcoI	YGGCCR	2 cut(s)	182, 843
AcsI	RAATTY	4 cut(s)	176, 798, 818, 838
AcuI	CTGAAG	4 cut(s)	423, 519, 776, 806
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	220, 763, 826
AfiI	CCNNNNNNNGG	2 cut(s)	61, 482
AgsI	TTSAA	6 cut(s)	31, 133, 573, 805, 858, 889
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	7 cut(s)	27, 346, 442, 508, 539, 547, 754
AluI	AGCT	7 cut(s)	27, 346, 442, 508, 539, 547, 754
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	3 cut(s)	163, 723, 784
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	63, 87, 182, 843
ApeKI	GCWGC	2 cut(s)	539, 626
ApoI	RAATTY	4 cut(s)	176, 798, 818, 838
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	3 cut(s)	143, 313, 646
AsuHPI	GGTGA	2 cut(s)	16, 805
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	2 cut(s)	140, 218
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	526, 613
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	163, 723, 784
BfoI	RGCGCY	2 cut(s)	144, 314
BisI	GCNGC	4 cut(s)	109, 185, 540, 627
BlsI	GCNGC	4 cut(s)	110, 186, 541, 628
Bme1390I	CCNGG	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	142, 220
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	397, 680
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	898, 930
BpuEI	CTTGAG	3 cut(s)	7, 80, 705
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	2 cut(s)	425, 551
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 482
Bse1I	ACTGG	2 cut(s)	127, 774
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	388, 505, 715
BseLI	CCNNNNNNNGG	2 cut(s)	61, 482
BseMII	CTCAG	3 cut(s)	51, 437, 783
BseNI	ACTGG	2 cut(s)	127, 774
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	526, 613
BsgI	GTGCAG	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	4 cut(s)	65, 89, 184, 845
BshNI	GGYRCC	2 cut(s)	140, 218
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	61, 482
BsmAI	GTCTC	3 cut(s)	163, 723, 784
BsmBI	CGTCTC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	4 cut(s)	65, 89, 184, 845
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	109, 185
BspANI	GGCC	4 cut(s)	65, 89, 184, 845
BspCNI	CTCAG	3 cut(s)	50, 438, 782
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	142, 220
BspQI	GCTCTTC	1 cut(s)	128
BspT107I	GGYRCC	2 cut(s)	140, 218
BsrI	ACTGG	2 cut(s)	127, 774
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	4 cut(s)	52, 205, 491, 740
Bst6I	CTCTTC	4 cut(s)	16, 128, 752, 782
BstACI	GRCGYC	1 cut(s)	141
BstBAI	YACGTR	2 cut(s)	425, 551
BstC8I	GCNNGC	2 cut(s)	91, 386
BstDEI	CTNAG	3 cut(s)	37, 446, 769
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	3 cut(s)	388, 505, 715
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	2 cut(s)	144, 314
BstHHI	GCGC	3 cut(s)	143, 313, 646
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	3 cut(s)	163, 723, 784
BstMBI	GATC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	362
BstSNI	TACGTA	1 cut(s)	551
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	526, 613
BstV2I	GAAGAC	1 cut(s)	566
BstZI	CGGCCG	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	65, 89, 184, 845
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	388, 505, 715
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	91, 386
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	3 cut(s)	143, 313, 646
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	219, 762, 825
CviAII	CATG	1 cut(s)	684
CviQI	GTAC	3 cut(s)	219, 762, 825
DdeI	CTNAG	3 cut(s)	37, 446, 769
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EaeI	YGGCCR	2 cut(s)	182, 843
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	4 cut(s)	16, 128, 752, 782
EarI	CTCTTC	4 cut(s)	16, 128, 752, 782
Ecl136II	GAGCTC	1 cut(s)	346
EclXI	CGGCCG	1 cut(s)	182
Eco105I	TACGTA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	4 cut(s)	423, 519, 776, 806
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	348
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	1 cut(s)	687
FatI	CATG	1 cut(s)	683
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	109, 185, 540, 627
FokI	GGATG	3 cut(s)	375, 512, 722
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	109, 185, 540, 627
GlaI	GCGC	3 cut(s)	142, 312, 645
GluI	GCNGC	4 cut(s)	109, 185, 540, 627
HaeII	RGCGCY	2 cut(s)	144, 314
HaeIII	GGCC	4 cut(s)	65, 89, 184, 845
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	3 cut(s)	143, 313, 646
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	687
Hin6I	GCGC	3 cut(s)	141, 311, 644
HinP1I	GCGC	3 cut(s)	141, 311, 644
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	25, 440
HinfI	GANTC	6 cut(s)	269, 613, 679, 713, 725, 805
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	16, 805
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	40, 447, 466
Hpy188III	TCNNGA	5 cut(s)	55, 377, 663, 722, 858
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	86, 149
HpyAV	CCTTC	3 cut(s)	543, 883, 923
HpyCH4III	ACNGT	4 cut(s)	52, 205, 491, 740
HpyCH4IV	ACGT	2 cut(s)	424, 550
HpyCH4V	TGCA	5 cut(s)	372, 384, 542, 585, 651
HpyF3I	CTNAG	3 cut(s)	37, 446, 769
HpySE526I	ACGT	2 cut(s)	424, 550
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	687
HspAI	GCGC	3 cut(s)	141, 311, 644
KasI	GGCGCC	1 cut(s)	140
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	258, 634
Lsp1109I	GCAGC	2 cut(s)	526, 613
LweI	GCATC	2 cut(s)	397, 680
MaeII	ACGT	2 cut(s)	424, 550
MaeIII	GTNAC	2 cut(s)	4, 932
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	8 cut(s)	176, 574, 639, 778, 798, 818, 838, 918
MluNI	TGGCCA	1 cut(s)	845
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	673, 722
MnlI	CCTC	7 cut(s)	19, 29, 79, 104, 125, 441, 924
Mox20I	TGGCCA	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	1 cut(s)	940
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	141
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	687
NlaIV	GGNNCC	2 cut(s)	142, 220
NmuCI	GTSAC	2 cut(s)	4, 932
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	915
PfeI	GAWTC	4 cut(s)	269, 613, 725, 805
PkrI	GCNGC	4 cut(s)	110, 186, 541, 628
PleI	GAGTC	2 cut(s)	673, 721
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	2 cut(s)	673, 721
Ppu21I	YACGTR	2 cut(s)	425, 551
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	142, 220
PstNI	CAGNNNCTG	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	3 cut(s)	220, 763, 826
RsaNI	GTAC	3 cut(s)	219, 762, 825
SacI	GAGCTC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	940
SatI	GCNGC	4 cut(s)	109, 185, 540, 627
Sau3AI	GATC	1 cut(s)	72
SchI	GAGTC	2 cut(s)	673, 722
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	397, 680
SfoI	GGCGCC	1 cut(s)	142
SmlI	CTYRAG	3 cut(s)	22, 95, 720
SmoI	CTYRAG	3 cut(s)	22, 95, 720
SnaBI	TACGTA	1 cut(s)	551
Sse9I	AATT	8 cut(s)	176, 574, 639, 778, 798, 818, 838, 918
SsiI	CCGC	2 cut(s)	109, 185
SspDI	GGCGCC	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	52, 205, 491, 740
TaiI	ACGT	2 cut(s)	427, 553
TaqI	TCGA	4 cut(s)	75, 84, 282, 324
TasI	AATT	8 cut(s)	176, 574, 639, 778, 798, 818, 838, 918
TatI	WGTACW	1 cut(s)	761
TauI	GCSGC	2 cut(s)	111, 187
TfiI	GAWTC	4 cut(s)	269, 613, 725, 805
Tru1I	TTAA	1 cut(s)	940
Tru9I	TTAA	1 cut(s)	940
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	2 cut(s)	4, 932
TseI	GCWGC	2 cut(s)	539, 626
Tsp45I	GTSAC	2 cut(s)	4, 932
TspDTI	ATGAA	8 cut(s)	251, 303, 372, 572, 612, 717, 758, 848
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	4 cut(s)	176, 798, 818, 838
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.