Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Reverse (-)

22710221 .. 22711304

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCCATATTCGTCGAAGATGAAACTTACGAGAACTTCAAAGCACCCAAATGGGTCGACCTTTCTGCCCCAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCGGCCGAAGATTTCCACAAATCAGCACGTAGTCTAAAGGGGAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATATTACCTTTTAGGGAAAGAGTCATAGGTATGGATGTGAAGCTAAAAGGGGTAGAAACCAAACCACCTTCAGCTGCAAAGCTACGTAATATGAAGACCAAAAGTGCAAATTATGTGTGCAGTGTCAATGACGAAAGTGAGAACAAGAATCCTAATATGGCTGCTCCACTTGCAATTGCGCCTTGCAAGTCCAAATCAAGAAAGGCATCAATGATTCCATGTAGTGAGAAGAAGAAACACAAGGGGGTGAGTCGTCTCAAGATTCATCAAAACAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.31

Weight (kDa)

9.13

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	5 cut(s)	112, 208, 277, 308, 316
AluI	AGCT	5 cut(s)	112, 208, 277, 308, 316
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	308, 395
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	295, 382
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	309, 396
BlsI	GCNGC	2 cut(s)	310, 397
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	163, 449
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	476
BsaAI	YACGTR	2 cut(s)	191, 320
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	154, 274
BseMII	CTCAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	295, 382
BsgI	GTGCAG	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	494
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	130
BstBAI	YACGTR	2 cut(s)	191, 320
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	154, 274
BstHHI	GCGC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	494
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSNI	TACGTA	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	295, 382
BstV2I	GAAGAC	1 cut(s)	335
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	154, 274
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	415
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	8 cut(s)	112, 128, 167, 208, 277, 308, 316, 395
CviKI_1	RGCY	8 cut(s)	112, 128, 167, 208, 277, 308, 316, 395
DdeI	CTNAG	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	1 cut(s)	456
FaiI	YATR	8 cut(s)	32, 41, 260, 266, 326, 348, 392, 454
FatI	CATG	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	309, 396
FokI	GGATG	2 cut(s)	141, 281
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	309, 396
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	309, 396
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	6 cut(s)	35, 255, 382, 448, 484, 496
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	213, 232
Hpy188III	TCNNGA	3 cut(s)	143, 432, 493
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	312
HpyCH4IV	ACGT	2 cut(s)	190, 319
HpyCH4V	TGCA	7 cut(s)	138, 150, 311, 341, 354, 407, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	190, 319
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	24, 403
LpnPI	CCDG	5 cut(s)	21, 115, 117, 142, 156
Lsp1109I	GCAGC	2 cut(s)	295, 382
LweI	GCATC	2 cut(s)	163, 449
MaeII	ACGT	2 cut(s)	190, 319
MboII	GAAGA	5 cut(s)	62, 182, 340, 475, 478
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	343, 408
MlyI	GAGTC	2 cut(s)	264, 493
MnlI	CCTC	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	82, 263
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	404
NlaIII	CATG	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	35, 382, 448, 496
PkrI	GCNGC	2 cut(s)	310, 397
PleI	GAGTC	2 cut(s)	263, 492
PpsI	GAGTC	2 cut(s)	263, 492
Ppu21I	YACGTR	2 cut(s)	191, 320
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	308
RseI	CAYNNNNRTG	2 cut(s)	82, 263
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	309, 396
SchI	GAGTC	2 cut(s)	264, 493
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	163, 449
SmiMI	CAYNNNNRTG	2 cut(s)	82, 263
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SnaBI	TACGTA	1 cut(s)	320
Sse9I	AATT	2 cut(s)	343, 408
SspI	AATATT	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	128
TaiI	ACGT	2 cut(s)	193, 322
TaqI	TCGA	2 cut(s)	48, 90
TasI	AATT	2 cut(s)	343, 408
TfiI	GAWTC	4 cut(s)	35, 382, 448, 496
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	2 cut(s)	308, 395
TspDTI	ATGAA	5 cut(s)	17, 69, 138, 341, 488
TspRI	CASTG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.