Rmu_sc0021207.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021207.1
OG0014767
Physical Location & Seq
Reverse (-)
12487 .. 15566
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021207.1_g000003.1.cds

Sequence Viewer

Length: 978 bp
atgaaaccagaaatcattgattggagcaacatagaatcgatattcgtcgaagatgaaacttacgagaacttcaaagcgcccaaatgggtcgacctttctgcccaagatgagctcattgatgatgaagcctggttctgcaatcctgattgcaagcatccaaagtccgctgaagatttccacaaatcagcacgtagtctaaaggtagggaagcttctgaggtctttatcagtttctgaaatcttaccttctaggggaaagagtcaaagggatgtgaagctaaaaggggtagaaaccaaaccaccttcagctgcaaagctacgtaatatgaagaccaatagttcaaattatgtgtgcagtgtcaatgacgaaagtgagaacaagaatcctaatatggctgccccacttccaattgcgccttgcaagtccaaatcaagaaaggcatcaatgactccatgtagtgagaagaagaaacaaggggatgagtcgtctcaagattcatcaaaacactacggtgtgaaaccgaagctgaagagtacattctcagccagtaatttgctcaagggacgggaaattttgaatcaaatcaccgaattctttaccgacatgaagaatttgaccaataggtgttcaagaaaaaagacattagagaatagttgcttgaaggagaaaatcacaaccaaagcccttactcgtaaggcaagaagtccttttccgaaaggcatagagaagaacctggtgacgaggttggtgctctcctcgtccacggcatttgatcaagaagtcaggtcaagggattctccgacgactgcaccctacggtgctggcacgcctgcgcacatgctcaaaagagacagattgtacccatactggttttggagccaaacattttggcatgcccagtgggaccacactagagtttctttgtgttcgccatcattgggatgccagaggaaaatctttatcaaaagaaattcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.93

Weight (kDa)

9.57

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 834
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 165
AcsI RAATTY 4 cut(s) 570, 590, 610, 970
AcuI CTGAAG 3 cut(s) 189, 288, 548
AfaI GTAC 2 cut(s) 535, 860
AfiI CCNNNNNNNGG 2 cut(s) 251, 938
AgsI TTSAA 5 cut(s) 73, 342, 577, 630, 661
AjnI CCWGG 2 cut(s) 128, 732
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 6 cut(s) 112, 211, 277, 308, 316, 526
AluI AGCT 6 cut(s) 112, 211, 277, 308, 316, 526
Alw21I GWGCWC 2 cut(s) 114, 753
Alw26I GTCTC 2 cut(s) 492, 843
AlwNI CAGNNNCTG 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 308, 395
ApoI RAATTY 4 cut(s) 570, 590, 610, 970
AspLEI GCGC 3 cut(s) 79, 415, 835
AspS9I GGNCC 1 cut(s) 904
AsuHPI GGTGA 2 cut(s) 577, 748
AvaII GGWCC 1 cut(s) 904
BanII GRGCYC 1 cut(s) 114
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 2 cut(s) 114, 753
BbvI GCAGC 2 cut(s) 295, 382
BccI CCATC 1 cut(s) 940
BceAI ACGGC 1 cut(s) 780
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 730, 764
BciT130I CCWGG 2 cut(s) 130, 734
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 492, 843
BfaI CTAG 2 cut(s) 249, 912
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 2 cut(s) 309, 396
BlsI GCNGC 2 cut(s) 310, 397
Bme1390I CCNGG 2 cut(s) 130, 734
Bme18I GGWCC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 904
BmiI GGNNCC 2 cut(s) 878, 905
BmrFI CCNGG 2 cut(s) 130, 734
BmrI ACTGGG 1 cut(s) 892
BmsI GCATC 3 cut(s) 163, 449, 932
BmuI ACTGGG 1 cut(s) 892
BpiI GAAGAC 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 474, 542
Bsa29I ATCGAT 1 cut(s) 38
BsaAI YACGTR 2 cut(s) 191, 320
BsaJI CCNNGG 1 cut(s) 762
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 938
Bse1I ACTGG 3 cut(s) 546, 872, 898
BseBI CCWGG 2 cut(s) 130, 734
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 4 cut(s) 154, 274, 484, 947
BseLI CCNNNNNNNGG 2 cut(s) 251, 938
BseMII CTCAG 2 cut(s) 206, 555
BseNI ACTGG 3 cut(s) 546, 872, 898
BseRI GAGGAG 1 cut(s) 745
BseXI GCAGC 2 cut(s) 295, 382
BsgI GTGCAG 2 cut(s) 373, 792
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 114, 753
BslFI GGGAC 2 cut(s) 576, 917
BslI CCNNNNNNNGG 2 cut(s) 251, 938
BsmAI GTCTC 2 cut(s) 492, 843
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 2 cut(s) 576, 917
Bsp1286I GDGCHC 2 cut(s) 114, 753
Bsp143I GATC 1 cut(s) 772
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 207, 554
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 878, 905
BsrI ACTGG 3 cut(s) 546, 872, 898
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 130, 734
Bst4CI ACNGT 2 cut(s) 512, 818
Bst6I CTCTTC 1 cut(s) 524
BstBAI YACGTR 2 cut(s) 191, 320
BstC8I GCNNGC 5 cut(s) 152, 823, 827, 831, 894
BstDEI CTNAG 2 cut(s) 215, 541
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 154, 274, 484, 947
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 3 cut(s) 79, 415, 835
BstKTI GATC 1 cut(s) 775
BstMAI GTCTC 2 cut(s) 492, 843
BstMBI GATC 1 cut(s) 772
BstNI CCWGG 2 cut(s) 130, 734
BstNSI RCATGY 2 cut(s) 841, 896
BstSCI CCNGG 2 cut(s) 128, 732
BstSNI TACGTA 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 295, 382
BstV2I GAAGAC 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 4 cut(s) 154, 274, 484, 947
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 905
Cac8I GCNNGC 5 cut(s) 152, 823, 827, 831, 894
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 3 cut(s) 79, 415, 835
Cfr13I GGNCC 1 cut(s) 904
ClaI ATCGAT 1 cut(s) 38
CsiI ACCWGGT 1 cut(s) 732
Csp6I GTAC 2 cut(s) 534, 859
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 4 cut(s) 453, 604, 838, 893
CviQI GTAC 2 cut(s) 534, 859
DdeI CTNAG 2 cut(s) 215, 541
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Ecl136II GAGCTC 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 904
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 189, 288, 548
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 128, 732
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 4 cut(s) 456, 607, 841, 896
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FaqI GGGAC 2 cut(s) 576, 917
FatI CATG 4 cut(s) 452, 603, 837, 892
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 309, 396
FokI GGATG 4 cut(s) 141, 281, 491, 954
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 309, 396
FspBI CTAG 2 cut(s) 249, 912
FspI TGCGCA 1 cut(s) 834
GlaI GCGC 3 cut(s) 78, 414, 834
GluI GCNGC 2 cut(s) 309, 396
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 3 cut(s) 79, 415, 835
Hin1II CATG 4 cut(s) 456, 607, 841, 896
Hin6I GCGC 3 cut(s) 77, 413, 833
HinP1I GCGC 3 cut(s) 77, 413, 833
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 8 cut(s) 35, 259, 382, 448, 482, 494, 577, 794
HphI GGTGA 2 cut(s) 577, 748
Hpy166II GTNNAC 2 cut(s) 91, 762
Hpy188I TCNGA 4 cut(s) 216, 235, 714, 801
Hpy188III TCNNGA 6 cut(s) 143, 432, 491, 630, 776, 975
Hpy8I GTNNAC 2 cut(s) 91, 762
Hpy99I CGWCG 2 cut(s) 50, 805
HpyAV CCTTC 3 cut(s) 255, 312, 655
HpyCH4III ACNGT 2 cut(s) 512, 818
HpyCH4IV ACGT 2 cut(s) 190, 319
HpyCH4V TGCA 6 cut(s) 138, 150, 311, 354, 420, 809
HpyF3I CTNAG 2 cut(s) 215, 541
HpySE526I ACGT 2 cut(s) 190, 319
Hsp92II CATG 4 cut(s) 456, 607, 841, 896
HspAI GCGC 3 cut(s) 77, 413, 833
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 1 cut(s) 772
LmnI GCTCC 2 cut(s) 24, 876
Lsp1109I GCAGC 2 cut(s) 295, 382
LweI GCATC 3 cut(s) 163, 449, 932
MabI ACCWGGT 1 cut(s) 732
MaeI CTAG 2 cut(s) 249, 912
MaeII ACGT 2 cut(s) 190, 319
MaeIII GTNAC 1 cut(s) 736
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 8 cut(s) 62, 182, 340, 475, 478, 541, 619, 739
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 114, 753
MluCI AATT 7 cut(s) 343, 408, 550, 570, 590, 610, 970
MlyI GAGTC 3 cut(s) 268, 442, 491
MmeI TCCRAC 1 cut(s) 824
MnlI CCTC 4 cut(s) 210, 735, 766, 942
MslI CAYNNNNRTG 2 cut(s) 510, 940
MspA1I CMGCKG 2 cut(s) 167, 308
MspR9I CCNGG 2 cut(s) 130, 734
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 2 cut(s) 130, 734
NdeII GATC 1 cut(s) 772
NlaIII CATG 4 cut(s) 456, 607, 841, 896
NlaIV GGNNCC 2 cut(s) 878, 905
NmuCI GTSAC 1 cut(s) 736
NsbI TGCGCA 1 cut(s) 834
NspI RCATGY 2 cut(s) 841, 896
OliI CACNNNNGTG 1 cut(s) 510
PaeI GCATGC 1 cut(s) 896
PfeI GAWTC 5 cut(s) 35, 382, 494, 577, 794
PkrI GCNGC 2 cut(s) 310, 397
PleI GAGTC 3 cut(s) 267, 442, 490
PpsI GAGTC 3 cut(s) 267, 442, 490
Ppu21I YACGTR 2 cut(s) 191, 320
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 128, 732
PspGI CCWGG 2 cut(s) 128, 732
PspN4I GGNNCC 2 cut(s) 878, 905
PspPI GGNCC 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 2 cut(s) 535, 860
RsaNI GTAC 2 cut(s) 534, 859
RseI CAYNNNNRTG 2 cut(s) 510, 940
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 2 cut(s) 309, 396
Sau3AI GATC 1 cut(s) 772
Sau96I GGNCC 1 cut(s) 904
SchI GAGTC 3 cut(s) 268, 442, 491
ScrFI CCNGG 2 cut(s) 130, 734
SduI GDGCHC 2 cut(s) 114, 753
SexAI ACCWGGT 1 cut(s) 732
SfaNI GCATC 3 cut(s) 163, 449, 932
SinI GGWCC 1 cut(s) 904
SmiMI CAYNNNNRTG 2 cut(s) 510, 940
SmlI CTYRAG 2 cut(s) 489, 557
SmoI CTYRAG 2 cut(s) 489, 557
SnaBI TACGTA 1 cut(s) 320
SphI GCATGC 1 cut(s) 896
Sse9I AATT 7 cut(s) 343, 408, 550, 570, 590, 610, 970
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 249, 912
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 128, 732
TaaI ACNGT 2 cut(s) 512, 818
TaiI ACGT 2 cut(s) 193, 322
TaqI TCGA 3 cut(s) 38, 48, 90
TasI AATT 7 cut(s) 343, 408, 550, 570, 590, 610, 970
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 5 cut(s) 35, 382, 494, 577, 794
TscAI CASTG 2 cut(s) 361, 905
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 308, 395
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 6 cut(s) 17, 69, 138, 341, 486, 620
TspRI CASTG 2 cut(s) 361, 905
VpaK11BI GGWCC 1 cut(s) 904
XapI RAATTY 4 cut(s) 570, 590, 610, 970
XceI RCATGY 2 cut(s) 841, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 249, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.