Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Forward (+)

26820154 .. 26845324

Gene Structure 25171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG271600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCGATATTCGTCGAAGATGAAACTTACGAGAACTTCAAAGCGCCCAAATGGGTCGACCTTTCTGCCCAAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCCGCTGAAGATTTCCACAAATCAGCACGTAGTCTAAAGGGGAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATCTTACCTTCTAGGGGAAAGAGTCAAAGGGATGTGAAGCTAAAAGGGGTAGAAACCAAACCACCTTCAGCTGCAAAGCTACGTAATATGAAGACCAATAGTTCAAATTATGTGTGCAGTGTCAATGACGAAAGTGAGAACAAGAATCCTAATATGGCTGCCCCACTTCCAATTGCGCCTTGCAAGTCCAAATCAAGAAAGGCATCAATGACTCCATGCAGTGAGAAGAAGAAACAAGGGGATGAGTCGTCTCAAGATTCATCAAAACACTACGGTGTGAAACCGAAGCTGAAGAGTACATTCTCAGCCACTGGAAACCCAGAAGAGCAACAGCTGCTGCTTCAATTTGGATCTGGTAAGAGGGTCAGTCAATGCTCTCTGACTGCTGGAACTCATTTTACTGAGGTGCATATAGAGGGGCTCAGGGTCAAAAAGATGGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

8.78

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	592
AcuI	CTGAAG	3 cut(s)	189, 285, 545
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	73, 339, 578
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	507
AluBI	AGCT	7 cut(s)	112, 208, 274, 305, 313, 523, 568
AluI	AGCT	7 cut(s)	112, 208, 274, 305, 313, 523, 568
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	592
AlwNI	CAGNNNCTG	3 cut(s)	230, 545, 571
ApeKI	GCWGC	4 cut(s)	305, 392, 568, 571
AspLEI	GCGC	2 cut(s)	79, 412
BanII	GRGCYC	2 cut(s)	114, 657
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	292, 379, 555, 558
BccI	CCATC	1 cut(s)	664
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	4 cut(s)	306, 393, 569, 572
BlsI	GCNGC	4 cut(s)	307, 394, 570, 573
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	163, 446
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	471
Bsa29I	ATCGAT	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	191, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	3 cut(s)	154, 271, 481
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	4 cut(s)	203, 552, 627, 670
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	4 cut(s)	292, 379, 555, 558
BsgI	GTGCAG	1 cut(s)	370
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	114, 657
Bsp143I	GATC	1 cut(s)	584
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	4 cut(s)	204, 551, 628, 669
BspDI	ATCGAT	1 cut(s)	38
BspPI	GGATC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	550
BssMI	GATC	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	521, 552
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstBAI	YACGTR	2 cut(s)	191, 317
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	4 cut(s)	212, 538, 636, 656
BstF5I	GGATG	3 cut(s)	154, 271, 481
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 412
BstKTI	GATC	1 cut(s)	587
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	584
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSNI	TACGTA	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	292, 379, 555, 558
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	154, 271, 481
BtsI	GCAGTG	2 cut(s)	358, 460
BtsIMutI	CAGTG	3 cut(s)	358, 460, 543
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	3 cut(s)	230, 545, 571
CfoI	GCGC	2 cut(s)	79, 412
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	450
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	4 cut(s)	212, 538, 636, 656
DpnI	GATC	1 cut(s)	586
DpnII	GATC	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	521, 552
EarI	CTCTTC	2 cut(s)	521, 552
Ecl136II	GAGCTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	114, 657
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	3 cut(s)	189, 285, 545
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	2 cut(s)	114, 657
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	1 cut(s)	453
FaiI	YATR	8 cut(s)	32, 323, 345, 389, 451, 645, 647, 679
FatI	CATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	306, 393, 569, 572
FokI	GGATG	3 cut(s)	141, 278, 488
FriOI	GRGCYC	2 cut(s)	114, 657
Fsp4HI	GCNGC	4 cut(s)	306, 393, 569, 572
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	78, 411
GluI	GCNGC	4 cut(s)	306, 393, 569, 572
HaeII	RGCGCY	1 cut(s)	80
HhaI	GCGC	2 cut(s)	79, 412
Hin1II	CATG	1 cut(s)	453
Hin6I	GCGC	2 cut(s)	77, 410
HinP1I	GCGC	2 cut(s)	77, 410
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	6 cut(s)	35, 256, 379, 445, 479, 491
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	213, 232, 615
Hpy188III	TCNNGA	3 cut(s)	143, 429, 488
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	252, 309
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	2 cut(s)	190, 316
HpyCH4V	TGCA	7 cut(s)	138, 150, 308, 351, 417, 453, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	4 cut(s)	212, 538, 636, 656
HpySE526I	ACGT	2 cut(s)	190, 316
Hsp92II	CATG	1 cut(s)	453
HspAI	GCGC	2 cut(s)	77, 410
Kzo9I	GATC	1 cut(s)	584
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	9 cut(s)	21, 115, 142, 156, 531, 567, 573, 606, 643
Lsp1109I	GCAGC	4 cut(s)	292, 379, 555, 558
LweI	GCATC	2 cut(s)	163, 446
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	190, 316
MalI	GATC	1 cut(s)	586
MboI	GATC	1 cut(s)	584
MboII	GAAGA	7 cut(s)	62, 182, 337, 472, 475, 538, 569
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	114, 657
MluCI	AATT	3 cut(s)	340, 405, 578
MlyI	GAGTC	3 cut(s)	265, 439, 488
MnlI	CCTC	4 cut(s)	207, 588, 631, 643
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	3 cut(s)	167, 305, 568
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	568
NdeII	GATC	1 cut(s)	584
NlaIII	CATG	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	35, 379, 491
PkrI	GCNGC	4 cut(s)	307, 394, 570, 573
PleI	GAGTC	3 cut(s)	264, 439, 487
PpsI	GAGTC	3 cut(s)	264, 439, 487
Ppu21I	YACGTR	2 cut(s)	191, 317
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	616, 648
PstNI	CAGNNNCTG	3 cut(s)	230, 545, 571
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	2 cut(s)	305, 568
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	552
SatI	GCNGC	4 cut(s)	306, 393, 569, 572
Sau3AI	GATC	1 cut(s)	584
SchI	GAGTC	3 cut(s)	265, 439, 488
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	114, 657
SfaNI	GCATC	2 cut(s)	163, 446
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SnaBI	TACGTA	1 cut(s)	317
Sse9I	AATT	3 cut(s)	340, 405, 578
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	2 cut(s)	193, 319
TaqI	TCGA	3 cut(s)	38, 48, 90
TasI	AATT	3 cut(s)	340, 405, 578
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	3 cut(s)	35, 379, 491
TscAI	CASTG	3 cut(s)	358, 460, 550
TseI	GCWGC	4 cut(s)	305, 392, 568, 571
TspDTI	ATGAA	5 cut(s)	17, 69, 138, 338, 483
TspRI	CASTG	3 cut(s)	358, 460, 550
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.