Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0014767

Physical Location & Seq

Genomic Coordinates Reverse (-)

95011 .. 96065

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001551.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgaaaccagaaatcattgattggagcaacatagaatcgatattcgtcgaagatgaaacttacgagaacttcaaagcgcccaaatgggtcgacctttctgcccaagatgagctcattgatgatgaagcctggttctgcaatcctgattgcaagcatccaaagtccgctgaagatttccacaaatcagcacgtagtctaaaggtagggaagcttctgaggtctttatcagtttctgaaatcttaccttctaggggaaagagtcaaagggatgtgaagctaaaaggggtagaaaccaaaccaccttcagctgcaaagctacgtaatatgaagaccaatagttcaaattatgtgtgcagtgtcaatgacgaaagtgagaacaagaatcctaatatggctgccccacttccaattgcgccttgcaagtccaaatcaagaaaggcatcaatgactccatgtagtgagaagaagaaacaaggggatgagtcgtctcaagattcatcaaaacactacggtgtgaaaccgaagctgaagagtacattctcagccagtaatttgctcaagggacgggaaattttgaatcaaatcaccgaattctttaccgacatgaagaatttgaccaataggtgttcaagaaaaaagacattagagaatagttgcttgaaggagaaagtatgggagagaatgcctctaattgttagagaaggtgactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.91

Weight (kDa)

9.03

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23250 FvH4_6g23250
malus_domestica	MD12G1066800.v1.1
prunus_persica	Prupe.7G067300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348761 RchiOBHm_Chr3g0481111
rosa_laevigata	RLG00000023420
rosa_multiflora	Rmu_sc0001551.1_g000018 Rmu_sc0021207.1_g000003
rosa_roxburghii	Rroxscaffold_6G00400630
rosa_rugosa	Rorug03G0190400
rosa_samantha	Rh1AG214900 Rh3AG240600 Rh3BG276300 Rh3CG271600 Rh3DG267700
rosa_wichuraiana	Rw3G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	570, 590, 610
AcuI	CTGAAG	3 cut(s)	189, 288, 548
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	73, 342, 577, 630, 661
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	112, 211, 277, 308, 316, 526
AluI	AGCT	6 cut(s)	112, 211, 277, 308, 316, 526
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	308, 395
ApoI	RAATTY	3 cut(s)	570, 590, 610
AspLEI	GCGC	2 cut(s)	79, 415
AsuHPI	GGTGA	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	295, 382
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	309, 396
BlsI	GCNGC	2 cut(s)	310, 397
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	163, 449
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpuEI	CTTGAG	2 cut(s)	474, 542
Bsa29I	ATCGAT	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	191, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	3 cut(s)	154, 274, 484
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	206, 555
BseNI	ACTGG	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	295, 382
BsgI	GTGCAG	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	207, 554
BspDI	ATCGAT	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	524
BstBAI	YACGTR	2 cut(s)	191, 320
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	215, 541
BstF5I	GGATG	3 cut(s)	154, 274, 484
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 415
BstMAI	GTCTC	1 cut(s)	492
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSNI	TACGTA	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	295, 382
BstV2I	GAAGAC	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	154, 274, 484
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	2 cut(s)	79, 415
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	2 cut(s)	453, 604
CviJI	RGCY	9 cut(s)	112, 128, 211, 277, 308, 316, 395, 526, 545
CviKI_1	RGCY	9 cut(s)	112, 128, 211, 277, 308, 316, 395, 526, 545
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	2 cut(s)	215, 541
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	3 cut(s)	189, 288, 548
EcoICRI	GAGCTC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	2 cut(s)	456, 607
FaiI	YATR	7 cut(s)	32, 326, 348, 392, 454, 605, 673
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	2 cut(s)	452, 603
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	309, 396
FokI	GGATG	3 cut(s)	141, 281, 491
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	309, 396
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	78, 414
GluI	GCNGC	2 cut(s)	309, 396
HaeII	RGCGCY	1 cut(s)	80
HhaI	GCGC	2 cut(s)	79, 415
Hin1II	CATG	2 cut(s)	456, 607
Hin6I	GCGC	2 cut(s)	77, 413
HinP1I	GCGC	2 cut(s)	77, 413
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	7 cut(s)	35, 259, 382, 448, 482, 494, 577
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	216, 235
Hpy188III	TCNNGA	4 cut(s)	143, 432, 491, 630
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	255, 312, 655, 695
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	2 cut(s)	190, 319
HpyCH4V	TGCA	5 cut(s)	138, 150, 311, 354, 420
HpyF3I	CTNAG	2 cut(s)	215, 541
HpySE526I	ACGT	2 cut(s)	190, 319
Hsp92II	CATG	2 cut(s)	456, 607
HspAI	GCGC	2 cut(s)	77, 413
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	5 cut(s)	21, 115, 142, 156, 559
Lsp1109I	GCAGC	2 cut(s)	295, 382
LweI	GCATC	2 cut(s)	163, 449
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	190, 319
MaeIII	GTNAC	1 cut(s)	704
MboII	GAAGA	7 cut(s)	62, 182, 340, 475, 478, 541, 619
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	7 cut(s)	343, 408, 550, 570, 590, 610, 690
MlyI	GAGTC	3 cut(s)	268, 442, 491
MnlI	CCTC	2 cut(s)	210, 696
MseI	TTAA	1 cut(s)	712
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	167, 308
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	130
NlaIII	CATG	2 cut(s)	456, 607
NmuCI	GTSAC	1 cut(s)	704
OliI	CACNNNNGTG	1 cut(s)	510
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	4 cut(s)	35, 382, 494, 577
PkrI	GCNGC	2 cut(s)	310, 397
PleI	GAGTC	3 cut(s)	267, 442, 490
PpsI	GAGTC	3 cut(s)	267, 442, 490
Ppu21I	YACGTR	2 cut(s)	191, 320
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	712
SatI	GCNGC	2 cut(s)	309, 396
SchI	GAGTC	3 cut(s)	268, 442, 491
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	163, 449
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	489, 557
SmoI	CTYRAG	2 cut(s)	489, 557
SnaBI	TACGTA	1 cut(s)	320
Sse9I	AATT	7 cut(s)	343, 408, 550, 570, 590, 610, 690
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	2 cut(s)	193, 322
TaqI	TCGA	3 cut(s)	38, 48, 90
TasI	AATT	7 cut(s)	343, 408, 550, 570, 590, 610, 690
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	4 cut(s)	35, 382, 494, 577
Tru1I	TTAA	1 cut(s)	712
Tru9I	TTAA	1 cut(s)	712
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	2 cut(s)	308, 395
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	6 cut(s)	17, 69, 138, 341, 486, 620
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	3 cut(s)	570, 590, 610
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.