RchiOBHm_Chr3g0481111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014767
Physical Location & Seq
Forward (+)
27172884 .. 27174659
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44608

Sequence Viewer

Length: 720 bp
ATGAAACCAGAAATCATTGATTGGAGCAACATAGAATCGATATTCGTCGAAGATGAAACTTACGAGAACTTCAAAGCGCCCAAATGGGTCGACCTTTCTGCCCAAGATGAGCTCATTGATGATGAAGCCTGGTTCTGCAATCCTGATTGCAAGCATCCAAAGTCCGCTGAAGATTTCCACAAATCAGCACGTAGTCTAAAGGGAAAGCTTCTGAGGTCTTTATCAGTTTCTGAAATCTTACCTTCTAGGGGAAAGAGTCAAAGGGATGTGAAGCTAAAAGGGGTAGAAACCAAACCACCTTCAGCTGCAAAGCTACGTAATATGAAGACCAATAGTTCAAATTATGTGTGCAGTGTCAATGACGAAAGTGAGAACAAGAATCCTAATATGGCTGCCCCACTTCCAATTGCGCCTTGCAAGTCCAAATCAAGAAAGGCATCAATGACTCCATGTAGTGAGAAGAAGAAACAAGGGGATGAGTCGTCTCAAGATTCATCAAAAGATTCAAAACACTACGGTGTGAAACCGAAGCTGAAGAGTACATTCTCAGCCAGTAATTCGCTCAAGGGACGGGAAATTTTGAATCAAATCACCGAATTCTTTACCGACATGAAGAATTTGACCAATAGGTGTTCAAGAAAAAAGACATTAGAGAATAATTGCTTGAAGGAGAAAGTATGGGAGAGAATGCCTCTAATTGTTAGAGAAGGTGACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.14

Weight (kDa)

9.02

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 165
AcsI RAATTY 3 cut(s) 576, 596, 616
AcuI CTGAAG 3 cut(s) 189, 285, 554
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 6 cut(s) 73, 339, 507, 583, 636, 667
AjnI CCWGG 1 cut(s) 128
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 6 cut(s) 112, 208, 274, 305, 313, 532
AluI AGCT 6 cut(s) 112, 208, 274, 305, 313, 532
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 305, 392
ApoI RAATTY 3 cut(s) 576, 596, 616
AspLEI GCGC 2 cut(s) 79, 412
AsuHPI GGTGA 1 cut(s) 583
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 292, 379
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 2 cut(s) 306, 393
BlsI GCNGC 2 cut(s) 307, 394
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 163, 446
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpuEI CTTGAG 2 cut(s) 471, 548
Bsa29I ATCGAT 1 cut(s) 38
BsaAI YACGTR 2 cut(s) 191, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 130
BseCI ATCGAT 1 cut(s) 38
BseGI GGATG 3 cut(s) 154, 271, 481
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 2 cut(s) 203, 561
BseNI ACTGG 1 cut(s) 552
BseXI GCAGC 2 cut(s) 292, 379
BsgI GTGCAG 1 cut(s) 370
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 114
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 204, 560
BspDI ATCGAT 1 cut(s) 38
BsrI ACTGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 530
BstBAI YACGTR 2 cut(s) 191, 317
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 212, 547
BstF5I GGATG 3 cut(s) 154, 271, 481
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 412
BstMAI GTCTC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSNI TACGTA 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 292, 379
BstV2I GAAGAC 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 3 cut(s) 154, 271, 481
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 2 cut(s) 79, 412
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 1 cut(s) 540
CviAII CATG 2 cut(s) 450, 610
CviJI RGCY 9 cut(s) 112, 128, 208, 274, 305, 313, 392, 532, 551
CviKI_1 RGCY 9 cut(s) 112, 128, 208, 274, 305, 313, 392, 532, 551
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 2 cut(s) 212, 547
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 189, 285, 554
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 453, 613
FaiI YATR 7 cut(s) 32, 323, 345, 389, 451, 611, 679
FaqI GGGAC 1 cut(s) 582
FatI CATG 2 cut(s) 449, 609
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 306, 393
FokI GGATG 3 cut(s) 141, 278, 488
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 306, 393
FspBI CTAG 1 cut(s) 246
GlaI GCGC 2 cut(s) 78, 411
GluI GCNGC 2 cut(s) 306, 393
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 2 cut(s) 79, 412
Hin1II CATG 2 cut(s) 453, 613
Hin6I GCGC 2 cut(s) 77, 410
HinP1I GCGC 2 cut(s) 77, 410
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 8 cut(s) 35, 256, 379, 445, 479, 491, 503, 583
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 213, 232
Hpy188III TCNNGA 4 cut(s) 143, 429, 488, 636
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 252, 309, 661, 701
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 2 cut(s) 190, 316
HpyCH4V TGCA 5 cut(s) 138, 150, 308, 351, 417
HpyF3I CTNAG 2 cut(s) 212, 547
HpySE526I ACGT 2 cut(s) 190, 316
Hsp92II CATG 2 cut(s) 453, 613
HspAI GCGC 2 cut(s) 77, 410
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 21, 115, 142, 156, 565
Lsp1109I GCAGC 2 cut(s) 292, 379
LweI GCATC 2 cut(s) 163, 446
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 190, 316
MaeIII GTNAC 1 cut(s) 710
MboII GAAGA 7 cut(s) 62, 182, 337, 472, 475, 547, 625
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 8 cut(s) 340, 405, 556, 576, 596, 616, 658, 696
MlyI GAGTC 3 cut(s) 265, 439, 488
MnlI CCTC 2 cut(s) 207, 702
MseI TTAA 1 cut(s) 718
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 2 cut(s) 167, 305
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 1 cut(s) 130
NlaIII CATG 2 cut(s) 453, 613
NmuCI GTSAC 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 516
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 5 cut(s) 35, 379, 491, 503, 583
PkrI GCNGC 2 cut(s) 307, 394
PleI GAGTC 3 cut(s) 264, 439, 487
PpsI GAGTC 3 cut(s) 264, 439, 487
Ppu21I YACGTR 2 cut(s) 191, 317
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 718
SatI GCNGC 2 cut(s) 306, 393
SchI GAGTC 3 cut(s) 265, 439, 488
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 163, 446
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 486, 563
SmoI CTYRAG 2 cut(s) 486, 563
SnaBI TACGTA 1 cut(s) 317
Sse9I AATT 8 cut(s) 340, 405, 556, 576, 596, 616, 658, 696
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 2 cut(s) 193, 319
TaqI TCGA 3 cut(s) 38, 48, 90
TasI AATT 8 cut(s) 340, 405, 556, 576, 596, 616, 658, 696
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 5 cut(s) 35, 379, 491, 503, 583
Tru1I TTAA 1 cut(s) 718
Tru9I TTAA 1 cut(s) 718
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 2 cut(s) 305, 392
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 17, 69, 138, 338, 483, 626
TspRI CASTG 1 cut(s) 358
XapI RAATTY 3 cut(s) 576, 596, 616
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.