Rorug03G0190400

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000089
Physical Location & Seq
Reverse (-)
16675445 .. 16680784
5340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0190400.1

Sequence Viewer

Length: 1647 bp
ATGGACCCACAGAACTCCACCGCCACCGGCACTCCTCCAATCCCCTCCTCCTCTGAAACACCACAACTCCCACCCCCCCAGCCCCAATCGCAACCTCAGCCGCCGTCCTCCTCCGCCTCAGCCCCTTCAACCTCCGCCCCAATCCCTCCGTCTCCGTCTCCGTCTCCGTCTCCAAACCCTAACCCTAAACCCTCAACCGCATCATTACCACCGCAGTCCCTCCCAGCCCCTGCTCATACTCGACCTCCCCCCACATTGAATCGCCCATGGCCGCAGCCGCCTCACTACTCCCACCACTACCCCTCCCCTTCTTCTTCCGCTTCCTCGGTGCCTCCGGCGCCGTCGGTCTCCGGGCCTCCTCCGAGGGGCGGCATTGCCATTGGTGTCCCGGCGCACCACCCTGGCCCCTCTCCCCCTCAGCCCACTCCGTATACCTCATCTTACGGCCATTTCGGCGGCATCGGCCGCGGCGGCGGTGTTGGTGTGCCTGAACCCTCATCCAATTCCAATGCTTCTCAGGTGAGACCGGTGAGACCGCCTATGCCAGGAATGCAGGGAATGGGGATGATGGGCTCGCTTGGTTCGACTTCTCAAATGCGCCCAGCTGGGATTTCTCCACACCATCCACAGAGACCTGTTCAATCTCCTCTTAGGCCACCATCTACCGCAAGTAATCAGTCCCCTACTTCCCAAAATTTCCAAGGGCATAACCTTTCAAGAGCCTCATCATTGGGATCTCCTAGTTCACCAAATACATCTCAAGTTTTACCGCTTCATAATCAGCCATGGTTATCTGGATCACAAGGGAAGCCTCCTATACCTTCCTCTCCGTATAGGCAGCAGATGACCTCGACATCGATGCTGCAAAGATCACATCTTCCGCAGCCGCAGCAGCAACAACAACAACACCATCCCCTTCCTACTGCTACACAGCAACAGCAGCAAGGACCCATGCCTACAGCTTCACCACAACAGCATATGCCATCTGTACAGCATCAACAACCTTCCTCCTCACATCAAGGACATGACCATTTTGGGCAACAAACTCAACCATCAAGGATCCCACAAGCTTCACCGCGTCAGCAACAAAATTCAAGGGTCCAGGTCCCAGTAAACCAGAAGTCTTCCCCACTTGCAGCAGCACAGCCTAACACAGTCCAATCAGCACCGCAAAATAGAATCACTAGTGCAGAAACTGAGGAACCTTGTAACAGAATTCTTAGCAAAAGAACCATTCATGATCTAGTCAACCAGATTGATCCATCGGAGAGATTGGATCCAGATGTTGAAGACATTCTCATGGACATTGCAGATGAATTTGTAGAATCTATTACAACATTTAGTTGCTCACTAGCCAAGCATCGGAAATCAACTACATTGGAAGCAAAAGACATACTCCTACATCTTGAAAAAAATTGGAATATAACTCTTCCTGGTTTTGGTGGTGATGAAATTAAGGGCTACAGAAAACCGATTACAAATGATATTCACAAGGGGCGTCTTGCTGCTATAAAGAAGTCCATGGTAGCTACTGAGACAGCAAATACGAGGAGTACTGCAGGGCAAGCTACTGGAAATGCAAAGGGTGGTGTAAAGGCGCCTGCCAATATAAGCTCCCAAAATATCAAAATGCGTGAAGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

548

Amino Acids

58.16

Weight (kDa)

10.0

Isoelectric Point (pI)

84.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_20kDa PF03847 408 - 475 4.8e-32 Transcription initiation factor TFIID subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 328, 337, 1597
AccI GTMKAC 1 cut(s) 431
AccII CGCG 2 cut(s) 468, 1078
AclWI GGATC 7 cut(s) 742, 805, 1054, 1067, 1253, 1271, 1284
AcoI YGGCCR 3 cut(s) 269, 445, 463
AcsI RAATTY 4 cut(s) 694, 1090, 1215, 1316
AcyI GRCGYC 3 cut(s) 338, 1498, 1598
AfaI GTAC 2 cut(s) 990, 1555
AfiI CCNNNNNNNGG 5 cut(s) 365, 368, 545, 1362, 1439
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 7 cut(s) 129, 259, 641, 717, 1095, 1289, 1409
AhlI ACTAGT 1 cut(s) 1184
AjnI CCWGG 4 cut(s) 400, 544, 1101, 1432
AluBI AGCT 6 cut(s) 605, 962, 1070, 1529, 1568, 1614
AluI AGCT 6 cut(s) 605, 962, 1070, 1529, 1568, 1614
Alw26I GTCTC 9 cut(s) 156, 162, 168, 174, 352, 517, 526, 625, 1529
AlwI GGATC 7 cut(s) 742, 805, 1054, 1067, 1253, 1271, 1284
AlwNI CAGNNNCTG 2 cut(s) 230, 1196
AoxI GGCC 6 cut(s) 269, 353, 403, 445, 463, 653
ApoI RAATTY 4 cut(s) 694, 1090, 1215, 1316
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 1293
AspLEI GCGC 4 cut(s) 340, 394, 600, 1600
AspS9I GGNCC 6 cut(s) 4, 353, 404, 947, 1099, 1105
AsuC2I CCSGG 2 cut(s) 352, 389
AsuHPI GGTGA 6 cut(s) 532, 541, 738, 957, 1065, 1457
AvaII GGWCC 4 cut(s) 4, 947, 1099, 1105
BamHI GGATCC 2 cut(s) 1059, 1276
BanI GGYRCC 3 cut(s) 328, 337, 1597
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 1116, 1296
BbvCI CCTCAGC 3 cut(s) 96, 118, 417
BccI CCATC 7 cut(s) 562, 630, 667, 918, 991, 1060, 1270
BceAI ACGGC 3 cut(s) 88, 325, 460
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 4 cut(s) 402, 546, 1103, 1434
BcnI CCSGG 2 cut(s) 352, 389
BcoDI GTCTC 9 cut(s) 156, 162, 168, 174, 352, 517, 526, 625, 1529
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 4 cut(s) 741, 1185, 1244, 1352
BfmI CTRYAG 3 cut(s) 957, 1462, 1557
BfoI RGCGCY 2 cut(s) 341, 1601
BglI GCCNNNNNGGC 2 cut(s) 453, 471
BmcAI AGTACT 1 cut(s) 1555
Bme1390I CCNGG 6 cut(s) 352, 389, 402, 546, 1103, 1434
Bme18I GGWCC 4 cut(s) 4, 947, 1099, 1105
BmgT120I GGNCC 6 cut(s) 4, 353, 404, 947, 1099, 1105
BmrFI CCNGG 6 cut(s) 352, 389, 402, 546, 1103, 1434
BmrI ACTGGG 1 cut(s) 1103
BmsI GCATC 5 cut(s) 209, 468, 849, 1003, 1369
BmuI ACTGGG 1 cut(s) 1103
BpiI GAAGAC 2 cut(s) 1116, 1296
Bpu10I CCTNAGC 3 cut(s) 96, 118, 417
BpuEI CTTGAG 1 cut(s) 744
BpuMI CCSGG 2 cut(s) 352, 389
Bsa29I ATCGAT 1 cut(s) 857
BsaHI GRCGYC 3 cut(s) 338, 1498, 1598
BsaI GGTCTC 4 cut(s) 352, 517, 526, 625
BsaJI CCNNGG 8 cut(s) 266, 324, 362, 400, 466, 700, 785, 1521
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 8 cut(s) 16, 46, 51, 81, 229, 259, 287, 317
Bsc4I CCNNNNNNNGG 5 cut(s) 365, 368, 545, 1362, 1439
Bse118I RCCGGY 2 cut(s) 26, 526
Bse1I ACTGG 2 cut(s) 1109, 1576
Bse3DI GCAATG 2 cut(s) 372, 1305
BseBI CCWGG 4 cut(s) 402, 546, 1103, 1434
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 8 cut(s) 266, 324, 362, 400, 466, 700, 785, 1521
BseGI GGATG 4 cut(s) 497, 570, 622, 910
BseLI CCNNNNNNNGG 5 cut(s) 365, 368, 545, 1362, 1439
BseMI GCAATG 2 cut(s) 372, 1305
BseMII CTCAG 6 cut(s) 110, 132, 431, 530, 1188, 1524
BseNI ACTGG 2 cut(s) 1109, 1576
BseRI GAGGAG 8 cut(s) 24, 37, 40, 100, 348, 636, 1000, 1564
BseX3I CGGCCG 1 cut(s) 463
BseYI CCCAGC 4 cut(s) 78, 223, 601, 605
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 2 cut(s) 468, 1078
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 6 cut(s) 271, 355, 405, 447, 465, 655
BshNI GGYRCC 3 cut(s) 328, 337, 1597
BshTI ACCGGT 1 cut(s) 526
BshVI ATCGAT 1 cut(s) 857
BsiEI CGRYCG 1 cut(s) 466
BsiSI CCGG 5 cut(s) 27, 335, 351, 389, 527
BslFI GGGAC 4 cut(s) 202, 371, 664, 1091
BslI CCNNNNNNNGG 5 cut(s) 365, 368, 545, 1362, 1439
BsmAI GTCTC 9 cut(s) 156, 162, 168, 174, 352, 517, 526, 625, 1529
BsmBI CGTCTC 4 cut(s) 156, 162, 168, 174
BsmFI GGGAC 4 cut(s) 202, 371, 664, 1091
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 6 cut(s) 271, 355, 405, 447, 465, 655
Bso31I GGTCTC 4 cut(s) 352, 517, 526, 625
Bsp1286I GDGCHC 1 cut(s) 575
Bsp1407I TGTACA 1 cut(s) 988
Bsp143I GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
Bsp19I CCATGG 3 cut(s) 266, 785, 1521
BspANI GGCC 6 cut(s) 271, 355, 405, 447, 465, 655
BspCNI CTCAG 6 cut(s) 109, 131, 430, 529, 1189, 1525
BspDI ATCGAT 1 cut(s) 857
BspFNI CGCG 2 cut(s) 468, 1078
BspHI TCATGA 1 cut(s) 1237
BspMAI CTGCAG 1 cut(s) 1561
BspPI GGATC 7 cut(s) 742, 805, 1054, 1067, 1253, 1271, 1284
BspT107I GGYRCC 3 cut(s) 328, 337, 1597
BspTNI GGTCTC 4 cut(s) 352, 517, 526, 625
BsrDI GCAATG 2 cut(s) 372, 1305
BsrFI RCCGGY 2 cut(s) 26, 526
BsrGI TGTACA 1 cut(s) 988
BsrI ACTGG 2 cut(s) 1109, 1576
BssAI RCCGGY 2 cut(s) 26, 526
BssECI CCNNGG 8 cut(s) 266, 324, 362, 400, 466, 700, 785, 1521
BssMI GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
BssNAI GTATAC 1 cut(s) 432
BssNI GRCGYC 3 cut(s) 338, 1498, 1598
BssT1I CCWWGG 4 cut(s) 266, 700, 785, 1521
Bst1107I GTATAC 1 cut(s) 432
Bst2UI CCWGG 4 cut(s) 402, 546, 1103, 1434
Bst4CI ACNGT 1 cut(s) 1156
Bst6I CTCTTC 1 cut(s) 1434
BstACI GRCGYC 3 cut(s) 338, 1498, 1598
BstAUI TGTACA 1 cut(s) 988
BstC8I GCNNGC 3 cut(s) 575, 1566, 1602
BstDEI CTNAG 8 cut(s) 96, 118, 417, 516, 650, 1197, 1220, 1533
BstDSI CCRYGG 4 cut(s) 266, 466, 785, 1521
BstENI CCTNNNNNAGG 1 cut(s) 543
BstF5I GGATG 4 cut(s) 497, 570, 622, 910
BstFNI CGCG 2 cut(s) 468, 1078
BstH2I RGCGCY 2 cut(s) 341, 1601
BstHHI GCGC 4 cut(s) 340, 394, 600, 1600
BstKTI GATC 7 cut(s) 737, 800, 872, 1062, 1243, 1261, 1279
BstMAI GTCTC 9 cut(s) 156, 162, 168, 174, 352, 517, 526, 625, 1529
BstMBI GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
BstMCI CGRYCG 1 cut(s) 466
BstNI CCWGG 4 cut(s) 402, 546, 1103, 1434
BstSCI CCNGG 6 cut(s) 350, 387, 400, 544, 1101, 1432
BstSFI CTRYAG 3 cut(s) 957, 1462, 1557
BstUI CGCG 2 cut(s) 468, 1078
BstV2I GAAGAC 2 cut(s) 1116, 1296
BstX2I RGATCY 3 cut(s) 734, 1059, 1276
BstYI RGATCY 3 cut(s) 734, 1059, 1276
BstZ17I GTATAC 1 cut(s) 432
BstZI CGGCCG 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 857
BsuRI GGCC 6 cut(s) 271, 355, 405, 447, 465, 655
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 4 cut(s) 266, 466, 785, 1521
BtsCI GGATG 4 cut(s) 497, 570, 622, 910
Cac8I GCNNGC 3 cut(s) 575, 1566, 1602
CaiI CAGNNNCTG 2 cut(s) 230, 1196
CciI TCATGA 1 cut(s) 1237
CfoI GCGC 4 cut(s) 340, 394, 600, 1600
Cfr10I RCCGGY 2 cut(s) 26, 526
Cfr13I GGNCC 6 cut(s) 4, 353, 404, 947, 1099, 1105
Cfr42I CCGCGG 1 cut(s) 469
ClaI ATCGAT 1 cut(s) 857
CseI GACGC 2 cut(s) 1067, 1487
Csp6I GTAC 2 cut(s) 989, 1554
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 7 cut(s) 267, 786, 952, 1025, 1238, 1300, 1522
CviQI GTAC 2 cut(s) 989, 1554
DdeI CTNAG 8 cut(s) 96, 118, 417, 516, 650, 1197, 1220, 1533
DinI GGCGCC 2 cut(s) 339, 1599
DpnI GATC 7 cut(s) 736, 799, 871, 1061, 1242, 1260, 1278
DpnII GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
EaeI YGGCCR 3 cut(s) 269, 445, 463
EagI CGGCCG 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 1434
EarI CTCTTC 1 cut(s) 1434
EciI GGCGGA 2 cut(s) 103, 124
EclXI CGGCCG 1 cut(s) 463
Eco130I CCWWGG 4 cut(s) 266, 700, 785, 1521
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 4 cut(s) 352, 517, 526, 625
Eco47I GGWCC 4 cut(s) 4, 947, 1099, 1105
Eco52I CGGCCG 1 cut(s) 463
EcoNI CCTNNNNNAGG 1 cut(s) 543
EcoO109I RGGNCCY 2 cut(s) 947, 1105
EcoRI GAATTC 1 cut(s) 1215
EcoRII CCWGG 4 cut(s) 400, 544, 1101, 1432
EcoT14I CCWWGG 4 cut(s) 266, 700, 785, 1521
EcoT38I GRGCYC 1 cut(s) 575
EgeI GGCGCC 2 cut(s) 339, 1599
EheI GGCGCC 2 cut(s) 339, 1599
ErhI CCWWGG 4 cut(s) 266, 700, 785, 1521
Esp3I CGTCTC 4 cut(s) 156, 162, 168, 174
FaeI CATG 7 cut(s) 270, 789, 955, 1028, 1241, 1303, 1525
FaqI GGGAC 4 cut(s) 202, 371, 664, 1091
FatI CATG 7 cut(s) 266, 785, 951, 1024, 1237, 1299, 1521
FauNDI CATATG 1 cut(s) 978
FblI GTMKAC 1 cut(s) 431
FokI GGATG 4 cut(s) 484, 577, 609, 897
FriOI GRGCYC 1 cut(s) 575
FspBI CTAG 4 cut(s) 741, 1185, 1244, 1352
GlaI GCGC 4 cut(s) 339, 393, 599, 1599
GsaI CCCAGC 4 cut(s) 82, 227, 605, 609
HaeII RGCGCY 2 cut(s) 341, 1601
HaeIII GGCC 6 cut(s) 271, 355, 405, 447, 465, 655
HapII CCGG 5 cut(s) 27, 335, 351, 389, 527
HgaI GACGC 2 cut(s) 1067, 1487
HhaI GCGC 4 cut(s) 340, 394, 600, 1600
Hin1I GRCGYC 3 cut(s) 338, 1498, 1598
Hin1II CATG 7 cut(s) 270, 789, 955, 1028, 1241, 1303, 1525
Hin6I GCGC 4 cut(s) 338, 392, 598, 1598
HinP1I GCGC 4 cut(s) 338, 392, 598, 1598
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 1068
HinfI GANTC 3 cut(s) 259, 1179, 1325
HpaII CCGG 5 cut(s) 27, 335, 351, 389, 527
HphI GGTGA 6 cut(s) 532, 541, 738, 957, 1065, 1457
Hpy166II GTNNAC 4 cut(s) 432, 746, 1114, 1249
Hpy188I TCNGA 4 cut(s) 55, 363, 1267, 1365
Hpy188III TCNNGA 5 cut(s) 717, 795, 1238, 1280, 1406
Hpy8I GTNNAC 4 cut(s) 432, 746, 1114, 1249
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 5 cut(s) 135, 318, 831, 926, 1014
HpyCH4III ACNGT 1 cut(s) 1156
HpyCH4V TGCA 7 cut(s) 553, 865, 1136, 1190, 1310, 1559, 1580
HpyF3I CTNAG 8 cut(s) 96, 118, 417, 516, 650, 1197, 1220, 1533
Hsp92I GRCGYC 3 cut(s) 338, 1498, 1598
Hsp92II CATG 7 cut(s) 270, 789, 955, 1028, 1241, 1303, 1525
HspAI GCGC 4 cut(s) 338, 392, 598, 1598
KasI GGCGCC 2 cut(s) 337, 1597
KspI CCGCGG 1 cut(s) 469
Kzo9I GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
LmnI GCTCC 1 cut(s) 1619
LweI GCATC 5 cut(s) 209, 468, 849, 1003, 1369
MaeI CTAG 4 cut(s) 741, 1185, 1244, 1352
MaeIII GTNAC 2 cut(s) 1208, 1639
MalI GATC 7 cut(s) 736, 799, 871, 1061, 1242, 1260, 1278
MboI GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
MboII GAAGA 6 cut(s) 303, 306, 869, 1116, 1301, 1421
MflI RGATCY 3 cut(s) 734, 1059, 1276
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 7 cut(s) 502, 694, 1090, 1215, 1316, 1414, 1452
Mly113I GGCGCC 2 cut(s) 338, 1598
MroXI GAANNNNTTC 1 cut(s) 1293
MseI TTAA 1 cut(s) 1455
MslI CAYNNNNRTG 1 cut(s) 1298
MspA1I CMGCKG 2 cut(s) 468, 605
MspI CCGG 5 cut(s) 27, 335, 351, 389, 527
MspR9I CCNGG 6 cut(s) 352, 389, 402, 546, 1103, 1434
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 4 cut(s) 402, 546, 1103, 1434
MvnI CGCG 2 cut(s) 468, 1078
NarI GGCGCC 2 cut(s) 338, 1598
NciI CCSGG 2 cut(s) 352, 389
NcoI CCATGG 3 cut(s) 266, 785, 1521
NdeI CATATG 1 cut(s) 978
NdeII GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
NlaIII CATG 7 cut(s) 270, 789, 955, 1028, 1241, 1303, 1525
PagI TCATGA 1 cut(s) 1237
PcsI WCGNNNNNNNCGW 1 cut(s) 581
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 1293
PfeI GAWTC 3 cut(s) 259, 1179, 1325
PinAI ACCGGT 1 cut(s) 526
PluTI GGCGCC 2 cut(s) 341, 1601
PpuMI RGGWCCY 2 cut(s) 947, 1105
Psp5II RGGWCCY 2 cut(s) 947, 1105
Psp6I CCWGG 4 cut(s) 400, 544, 1101, 1432
PspFI CCCAGC 4 cut(s) 78, 223, 601, 605
PspGI CCWGG 4 cut(s) 400, 544, 1101, 1432
PspPI GGNCC 6 cut(s) 4, 353, 404, 947, 1099, 1105
PspPPI RGGWCCY 2 cut(s) 947, 1105
PstI CTGCAG 1 cut(s) 1561
PstNI CAGNNNCTG 2 cut(s) 230, 1196
PsuI RGATCY 3 cut(s) 734, 1059, 1276
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 990, 1555
RsaNI GTAC 2 cut(s) 989, 1554
RseI CAYNNNNRTG 1 cut(s) 1298
SacII CCGCGG 1 cut(s) 469
SaqAI TTAA 1 cut(s) 1455
Sau3AI GATC 7 cut(s) 734, 797, 869, 1059, 1240, 1258, 1276
Sau96I GGNCC 6 cut(s) 4, 353, 404, 947, 1099, 1105
ScaI AGTACT 1 cut(s) 1555
ScrFI CCNGG 6 cut(s) 352, 389, 402, 546, 1103, 1434
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 5 cut(s) 209, 468, 849, 1003, 1369
SfcI CTRYAG 3 cut(s) 957, 1462, 1557
SfoI GGCGCC 2 cut(s) 339, 1599
Sfr303I CCGCGG 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 469
SinI GGWCC 4 cut(s) 4, 947, 1099, 1105
SmiMI CAYNNNNRTG 1 cut(s) 1298
SmlI CTYRAG 1 cut(s) 759
SmoI CTYRAG 1 cut(s) 759
SpeI ACTAGT 1 cut(s) 1184
Sse9I AATT 7 cut(s) 502, 694, 1090, 1215, 1316, 1414, 1452
SspDI GGCGCC 2 cut(s) 337, 1597
SspMI CTAG 4 cut(s) 741, 1185, 1244, 1352
StyD4I CCNGG 6 cut(s) 350, 387, 400, 544, 1101, 1432
StyI CCWWGG 4 cut(s) 266, 700, 785, 1521
TaaI ACNGT 1 cut(s) 1156
TaqI TCGA 4 cut(s) 241, 584, 851, 857
TaqII GACCGA 1 cut(s) 334
TasI AATT 7 cut(s) 502, 694, 1090, 1215, 1316, 1414, 1452
TatI WGTACW 2 cut(s) 988, 1553
TauI GCSGC 9 cut(s) 103, 274, 280, 372, 459, 468, 471, 474, 889
TfiI GAWTC 3 cut(s) 259, 1179, 1325
Tru1I TTAA 1 cut(s) 1455
Tru9I TTAA 1 cut(s) 1455
TspDTI ATGAA 4 cut(s) 764, 1226, 1329, 1464
TspGWI ACGGA 6 cut(s) 138, 144, 150, 156, 417, 819
VpaK11BI GGWCC 4 cut(s) 4, 947, 1099, 1105
XagI CCTNNNNNAGG 1 cut(s) 543
XapI RAATTY 4 cut(s) 694, 1090, 1215, 1316
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 4 cut(s) 741, 1185, 1244, 1352
ZrmI AGTACT 1 cut(s) 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.