RchiOBHm_Chr5g0033771

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000089
Physical Location & Seq
Reverse (-)
27637925 .. 27639288
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31283

Sequence Viewer

Length: 759 bp
ATGGCTAATGGAGAAACTTCACGAAAAGGTGAGAAGAGAGGAAAAAAACAACGAAAAGCTGTGTTAGCCGCTGCTATTGCTACAATGAGGCAAGAAATAAATGAAACTTTACAAATCTCAGAGGGAGGTTCAAATTCTCCCAAAGCATCTGCTAGTAGAGGAACTGAAGATGCAACAAATTCAGAACTTTCAAACAGAAAACCAAGAGGTAAGGCAAAGGCATTGGACAAAGGAAAAGTAATAGAACCTATTGAAGTAGAATTCAATGAAAGAAGTCAGCCTTATGGGAAACATGCAGCTGGATTTGCTACTTTCCTTGGGGTCACAGCAAGAGAATTAGTACCATTAACAATTCCATCTTGGACTGGAAAAGCGATCTCAGATAAATTCAAAACTCAAATTTGGCAACACATCACTACTTATTACATTGTGGACGAGTGTCACAAGAAAGCAATTTTCCAAAGAATGGCTAAGCTTTGGCGAGATTATAGATGCTTGACATTAAAAGAAGTACGAAAGCAAGCTGAATCGGTAGGCCTACAAACAGCTGCTGCCATGTGCAAACCTGATAATATACATTCTATGGATGCGTCGTTAAGTTTTATCAAATCTAGAATTACTCCAGCCTTTATGGAAAAGTGTGAAAAGTTTAAACGGATGAGAGAACAGAAAACTTTACTTCATAGGACAAGCAGAAAAAGTTTTGCTTGCATTGAGGATGAGTTGGTAAGACTGAACAAAATTGCACATGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

252

Amino Acids

28.44

Weight (kDa)

9.86

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AciI CCGC 1 cut(s) 69
AcsI RAATTY 5 cut(s) 133, 178, 260, 386, 399
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 342, 513
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 5 cut(s) 132, 192, 254, 265, 391
AluBI AGCT 5 cut(s) 59, 299, 475, 524, 548
AluI AGCT 5 cut(s) 59, 299, 475, 524, 548
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 4 cut(s) 71, 296, 548, 551
ApoI RAATTY 5 cut(s) 133, 178, 260, 386, 399
AsuHPI GGTGA 1 cut(s) 41
BbvI GCAGC 4 cut(s) 58, 308, 535, 538
BccI CCATC 1 cut(s) 364
BfaI CTAG 2 cut(s) 153, 612
BisI GCNGC 5 cut(s) 69, 72, 297, 549, 552
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 5 cut(s) 70, 73, 298, 550, 553
BmsI GCATC 4 cut(s) 155, 160, 482, 577
BoxI GACNNNNGTC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 606
Bpu1102I GCTNAGC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 3 cut(s) 592, 663, 724
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 132, 393
BseNI ACTGG 1 cut(s) 370
BseXI GCAGC 4 cut(s) 58, 308, 535, 538
BshFI GGCC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 466
BsnI GGCC 1 cut(s) 537
Bsp143I GATC 1 cut(s) 375
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 2 cut(s) 131, 392
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 522, 709
BstDEI CTNAG 3 cut(s) 118, 379, 471
BstF5I GGATG 3 cut(s) 592, 663, 724
BstKTI GATC 1 cut(s) 378
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 3 cut(s) 65, 77, 305
BstNSI RCATGY 2 cut(s) 296, 752
BstPAI GACNNNNGTC 1 cut(s) 438
BstV1I GCAGC 4 cut(s) 58, 308, 535, 538
BsuRI GGCC 1 cut(s) 537
BtsCI GGATG 3 cut(s) 592, 663, 724
Cac8I GCNNGC 2 cut(s) 522, 709
CaiI CAGNNNCTG 1 cut(s) 551
CseI GACGC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 341, 512
CviAII CATG 3 cut(s) 293, 556, 749
CviQI GTAC 2 cut(s) 341, 512
DdeI CTNAG 3 cut(s) 118, 379, 471
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 296, 559, 752
FalI AAGNNNNNCTT 4 cut(s) 265, 297, 691, 723
FatI CATG 3 cut(s) 292, 555, 748
Fnu4HI GCNGC 5 cut(s) 69, 72, 297, 549, 552
FokI GGATG 3 cut(s) 599, 670, 731
Fsp4HI GCNGC 5 cut(s) 69, 72, 297, 549, 552
FspBI CTAG 2 cut(s) 153, 612
GluI GCNGC 5 cut(s) 69, 72, 297, 549, 552
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 1 cut(s) 537
HgaI GACGC 1 cut(s) 579
Hin1II CATG 3 cut(s) 296, 559, 752
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 1 cut(s) 527
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 3 cut(s) 121, 184, 382
Hpy188III TCNNGA 2 cut(s) 21, 612
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 595
HpyCH4V TGCA 5 cut(s) 173, 296, 561, 711, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 77, 305
HpyF3I CTNAG 3 cut(s) 118, 379, 471
Hsp92II CATG 3 cut(s) 296, 559, 752
Kzo9I GATC 1 cut(s) 375
LpnPI CCDG 4 cut(s) 285, 351, 579, 636
Lsp1109I GCAGC 4 cut(s) 58, 308, 535, 538
LweI GCATC 4 cut(s) 155, 160, 482, 577
MaeI CTAG 2 cut(s) 153, 612
MaeIII GTNAC 2 cut(s) 322, 440
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 2 cut(s) 46, 179
MnlI CCTC 7 cut(s) 32, 81, 115, 119, 152, 200, 709
MseI TTAA 4 cut(s) 347, 503, 596, 651
MspA1I CMGCKG 3 cut(s) 71, 299, 548
MssI GTTTAAAC 1 cut(s) 652
MwoI GCNNNNNNNGC 3 cut(s) 65, 77, 305
NdeII GATC 1 cut(s) 375
NlaIII CATG 3 cut(s) 296, 559, 752
NmuCI GTSAC 2 cut(s) 322, 440
NspI RCATGY 2 cut(s) 296, 752
PceI AGGCCT 1 cut(s) 537
PciI ACATGT 1 cut(s) 748
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 5 cut(s) 70, 73, 298, 550, 553
PmeI GTTTAAAC 1 cut(s) 652
PscI ACATGT 1 cut(s) 748
PshAI GACNNNNGTC 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 551
PvuII CAGCTG 2 cut(s) 299, 548
RsaI GTAC 2 cut(s) 342, 513
RsaNI GTAC 2 cut(s) 341, 512
SaqAI TTAA 4 cut(s) 347, 503, 596, 651
SatI GCNGC 5 cut(s) 69, 72, 297, 549, 552
Sau3AI GATC 1 cut(s) 375
SfaNI GCATC 4 cut(s) 155, 160, 482, 577
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 153, 612
StuI AGGCCT 1 cut(s) 537
StyI CCWWGG 1 cut(s) 316
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 4 cut(s) 347, 503, 596, 651
Tru9I TTAA 4 cut(s) 347, 503, 596, 651
TseFI GTSAC 2 cut(s) 322, 440
TseI GCWGC 4 cut(s) 71, 296, 548, 551
Tsp45I GTSAC 2 cut(s) 322, 440
TspDTI ATGAA 3 cut(s) 117, 282, 671
TspGWI ACGGA 1 cut(s) 670
Van91I CCANNNNNTGG 1 cut(s) 466
XapI RAATTY 5 cut(s) 133, 178, 260, 386, 399
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 2 cut(s) 296, 752
XspI CTAG 2 cut(s) 153, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.