Rmu_sc0003780.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003780.1
OG0000089
Physical Location & Seq
Reverse (-)
17399 .. 22157
4759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003780.1_g000005.1.cds

Sequence Viewer

Length: 1422 bp
atggctgctgttccgacaaggaaggaggccgagatttgtgggattaaactaggtgttgtgttgttgtgtgaggagcccaaagtagtccaagaaggacaagcaccatgggctgaactagcggcccaagctagaaaggactcgcctcgcgccgcgtgggaaaccaaatggggattcccacgagagcccaaaatggagcccatgacccgtgatggcaagaaaagcaatccaccaataagaatatcggatgcagattctaattctcctgatataatatcatctactgcaacacctaatactccacggtgtgaagatgagacggagccagcaaattcaaagaggcctcctaggggcaaggcaaagggagataaagattttaagaaaaaaggtcgagctgaagttgaattcaatgctagggtgacgccttatggacaatatacagcaggtttttcctccttccttggagtcacagcaagagagtttgttccaattacgcttaagaattggaaagacctctcagatacttatagagaacaaatctggcaatatatcacgaagcaacaaagtgaaacgcgggatgcaatatcaaggtctgatgtttggcttcgtgcttatgaagcaaagcagaagaatgggacagctgaggaagctgtcgattcagaaatagtgaaacaagtgaaaaagttcaaggaagaagaaacagtttctggaccgtcttctataaagaatgatgctgttgcaaaagtactcggtccagatccacgaggacgagtaagagggtatggctttggtgcactaccttcaaaactcgatgctcaatcacatgtaagtaataaagtcacaatgttagagaatgctcttgctgctcaaacacaagtggtagacaaattgcaagagatggtgagaggcctttgtgctcggctagaccaaagaggaaataacaatgaacacactagtgcacaacaatctgctactgagattggaaatagaaaacgtaaagaaaatccaagtgttagaaataatggtagtcatatagcacagagcaaacaaaaagatgcaagtatgaaaagttcttataatgagacagaaaatggcagcccaatgcagcaaagttttaatggaaagaagcaactttctggacaagataaccgagaaaagttccaaaagacagatttggggaaacaagtgcagttgttaagttggtttgctaaagaggaagtagttgttgcaagtgctagcattatatcaaaagatccacaagttgaggtgcatcatgtgcctcttggccatgattgttggaaagtatcggtgcatgaagtttttcatgatatagccttgtattgcccaacaagtgagtttagtaaactttatgcatccacaggaagtatgattgcatggcctatcaagtacatcaaagtgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

473

Amino Acids

52.71

Weight (kDa)

9.07

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 879
AccII CGCG 3 cut(s) 147, 152, 571
AciI CCGC 3 cut(s) 119, 150, 571
AclWI GGATC 2 cut(s) 749, 1244
AcoI YGGCCR 1 cut(s) 1282
AcsI RAATTY 2 cut(s) 328, 401
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 744, 1406
AfiI CCNNNNNNNGG 1 cut(s) 347
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 5 cut(s) 333, 401, 406, 685, 801
AhlI ACTAGT 1 cut(s) 950
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AleI CACNNNNGTG 1 cut(s) 951
AluBI AGCT 4 cut(s) 128, 392, 638, 647
AluI AGCT 4 cut(s) 128, 392, 638, 647
Alw21I GWGCWC 3 cut(s) 793, 916, 958
Alw26I GTCTC 2 cut(s) 308, 1073
Alw44I GTGCAC 2 cut(s) 789, 954
AlwI GGATC 2 cut(s) 749, 1244
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 6 cut(s) 27, 120, 338, 904, 1282, 1394
ApaLI GTGCAC 2 cut(s) 789, 954
ApeKI GCWGC 4 cut(s) 5, 860, 1092, 1102
ApoI RAATTY 2 cut(s) 328, 401
Asp700I GAANNNNTTC 2 cut(s) 680, 1317
AspA2I CCTAGG 1 cut(s) 344
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 121, 707, 749
AsuHPI GGTGA 2 cut(s) 427, 910
AsuNHI GCTAGC 1 cut(s) 1232
AvaII GGWCC 2 cut(s) 707, 749
AvrII CCTAGG 1 cut(s) 344
BaeGI GKGCMC 2 cut(s) 793, 958
BalI TGGCCA 1 cut(s) 1284
BanII GRGCYC 3 cut(s) 78, 186, 198
BauI CACGAG 2 cut(s) 177, 759
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 3 cut(s) 793, 916, 958
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 847, 1104, 1114
BccI CCATC 2 cut(s) 203, 889
BcoDI GTCTC 2 cut(s) 308, 1073
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 8 cut(s) 50, 116, 129, 345, 411, 920, 951, 1233
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 6 cut(s) 6, 120, 150, 861, 1093, 1103
BlnI CCTAGG 1 cut(s) 344
BlsI GCNGC 6 cut(s) 7, 121, 151, 862, 1094, 1104
BmcAI AGTACT 1 cut(s) 744
Bme18I GGWCC 2 cut(s) 707, 749
BmgT120I GGNCC 3 cut(s) 121, 707, 749
BmiI GGNNCC 3 cut(s) 75, 195, 321
BmsI GCATC 7 cut(s) 235, 565, 718, 799, 1042, 1276, 1379
BmtI GCTAGC 1 cut(s) 1236
BpiI GAAGAC 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 4 cut(s) 104, 299, 344, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseDI CCNNGG 4 cut(s) 104, 299, 344, 457
BseGI GGATG 3 cut(s) 250, 580, 1370
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 3 cut(s) 528, 630, 963
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 2 cut(s) 793, 958
BseXI GCAGC 3 cut(s) 847, 1104, 1114
BsgI GTGCAG 1 cut(s) 1205
Bsh1236I CGCG 3 cut(s) 147, 152, 571
BshFI GGCC 6 cut(s) 29, 122, 340, 906, 1284, 1396
BsiHKAI GWGCWC 3 cut(s) 793, 916, 958
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 308, 1073
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 6 cut(s) 29, 122, 340, 906, 1284, 1396
Bsp1286I GDGCHC 6 cut(s) 78, 186, 198, 793, 916, 958
Bsp143I GATC 2 cut(s) 754, 1249
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 3 cut(s) 119, 150, 571
BspANI GGCC 6 cut(s) 29, 122, 340, 906, 1284, 1396
BspCNI CTCAG 3 cut(s) 527, 631, 964
BspFNI CGCG 3 cut(s) 147, 152, 571
BspHI TCATGA 1 cut(s) 1321
BspLI GGNNCC 3 cut(s) 75, 195, 321
BspMI ACCTGC 1 cut(s) 431
BspOI GCTAGC 1 cut(s) 1236
BspPI GGATC 2 cut(s) 749, 1244
BspTI CTTAAG 1 cut(s) 494
BssECI CCNNGG 4 cut(s) 104, 299, 344, 457
BssMI GATC 2 cut(s) 754, 1249
BssNI GRCGYC 1 cut(s) 419
BssSI CACGAG 2 cut(s) 177, 759
BssT1I CCWWGG 3 cut(s) 104, 344, 457
Bst2BI CACGAG 2 cut(s) 177, 759
Bst4CI ACNGT 3 cut(s) 303, 700, 711
BstACI GRCGYC 1 cut(s) 419
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 1273
BstC8I GCNNGC 2 cut(s) 324, 1234
BstDEI CTNAG 3 cut(s) 514, 639, 972
BstDSI CCRYGG 2 cut(s) 104, 299
BstF5I GGATG 3 cut(s) 250, 580, 1370
BstFNI CGCG 3 cut(s) 147, 152, 571
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 757, 1252
BstMAI GTCTC 2 cut(s) 308, 1073
BstMBI GATC 2 cut(s) 754, 1249
BstMWI GCNNNNNNNGC 8 cut(s) 107, 116, 125, 219, 614, 644, 860, 1273
BstNSI RCATGY 1 cut(s) 824
BstSLI GKGCMC 2 cut(s) 793, 958
BstUI CGCG 3 cut(s) 147, 152, 571
BstV1I GCAGC 3 cut(s) 847, 1104, 1114
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 2 cut(s) 754, 1249
BstYI RGATCY 2 cut(s) 754, 1249
BsuRI GGCC 6 cut(s) 29, 122, 340, 906, 1284, 1396
BtgI CCRYGG 2 cut(s) 104, 299
BtsCI GGATG 3 cut(s) 250, 580, 1370
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 324, 1234
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 1321
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 3 cut(s) 121, 707, 749
CseI GACGC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 743, 1405
CviAII CATG 8 cut(s) 105, 199, 821, 1271, 1286, 1310, 1322, 1392
CviQI GTAC 2 cut(s) 743, 1405
DdeI CTNAG 3 cut(s) 514, 639, 972
DpnI GATC 2 cut(s) 756, 1251
DpnII GATC 2 cut(s) 754, 1249
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 1282
Eco130I CCWWGG 3 cut(s) 104, 344, 457
Eco147I AGGCCT 2 cut(s) 340, 906
Eco24I GRGCYC 3 cut(s) 78, 186, 198
Eco47I GGWCC 2 cut(s) 707, 749
Eco57I CTGAAG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 401
EcoT14I CCWWGG 3 cut(s) 104, 344, 457
EcoT22I ATGCAT 1 cut(s) 1372
EcoT38I GRGCYC 3 cut(s) 78, 186, 198
ErhI CCWWGG 3 cut(s) 104, 344, 457
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 8 cut(s) 108, 202, 824, 1274, 1289, 1313, 1325, 1395
FaqI GGGAC 1 cut(s) 646
FatI CATG 8 cut(s) 104, 198, 820, 1270, 1285, 1309, 1321, 1391
FauI CCCGC 1 cut(s) 564
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 6 cut(s) 6, 120, 150, 861, 1093, 1103
FokI GGATG 3 cut(s) 257, 587, 1357
FriOI GRGCYC 3 cut(s) 78, 186, 198
Fsp4HI GCNGC 6 cut(s) 6, 120, 150, 861, 1093, 1103
FspBI CTAG 8 cut(s) 50, 116, 129, 345, 411, 920, 951, 1233
GlaI GCGC 1 cut(s) 148
GluI GCNGC 6 cut(s) 6, 120, 150, 861, 1093, 1103
HaeIII GGCC 6 cut(s) 29, 122, 340, 906, 1284, 1396
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 8 cut(s) 108, 202, 824, 1274, 1289, 1313, 1325, 1395
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 5 cut(s) 137, 171, 251, 462, 653
HphI GGTGA 2 cut(s) 427, 910
Hpy166II GTNNAC 4 cut(s) 791, 880, 956, 1361
Hpy188I TCNGA 5 cut(s) 15, 244, 517, 592, 658
Hpy188III TCNNGA 6 cut(s) 263, 550, 705, 752, 1134, 1322
Hpy8I GTNNAC 4 cut(s) 791, 880, 956, 1361
HpyAV CCTTC 4 cut(s) 16, 86, 463, 807
HpyCH4III ACNGT 3 cut(s) 303, 700, 711
HpyCH4IV ACGT 1 cut(s) 991
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 116, 125, 219, 614, 644, 860, 1273
HpyF3I CTNAG 3 cut(s) 514, 639, 972
HpySE526I ACGT 1 cut(s) 991
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 8 cut(s) 108, 202, 824, 1274, 1289, 1313, 1325, 1395
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 754, 1249
LmnI GCTCC 3 cut(s) 73, 193, 319
LpnPI CCDG 8 cut(s) 276, 336, 426, 523, 690, 765, 1119, 1362
Lsp1109I GCAGC 3 cut(s) 847, 1104, 1114
LweI GCATC 7 cut(s) 235, 565, 718, 799, 1042, 1276, 1379
MaeI CTAG 8 cut(s) 50, 116, 129, 345, 411, 920, 951, 1233
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 3 cut(s) 415, 463, 835
MalI GATC 2 cut(s) 756, 1251
MboI GATC 2 cut(s) 754, 1249
MboII GAAGA 5 cut(s) 320, 637, 701, 704, 705
MflI RGATCY 2 cut(s) 754, 1249
MhlI GDGCHC 6 cut(s) 78, 186, 198, 793, 916, 958
MlsI TGGCCA 1 cut(s) 1284
MluCI AATT 7 cut(s) 256, 328, 401, 486, 499, 884, 1417
MluNI TGGCCA 1 cut(s) 1284
MlyI GAGTC 2 cut(s) 131, 471
MmeI TCCRAC 2 cut(s) 38, 1274
Mox20I TGGCCA 1 cut(s) 1284
Mph1103I ATGCAT 1 cut(s) 1372
MroXI GAANNNNTTC 2 cut(s) 680, 1317
MscI TGGCCA 1 cut(s) 1284
MseI TTAA 5 cut(s) 45, 375, 495, 1113, 1193
MslI CAYNNNNRTG 2 cut(s) 951, 1412
Msp20I TGGCCA 1 cut(s) 1284
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 856
MvnI CGCG 3 cut(s) 147, 152, 571
MwoI GCNNNNNNNGC 8 cut(s) 107, 116, 125, 219, 614, 644, 860, 1273
NcoI CCATGG 1 cut(s) 104
NdeII GATC 2 cut(s) 754, 1249
NheI GCTAGC 1 cut(s) 1232
NlaIII CATG 8 cut(s) 108, 202, 824, 1274, 1289, 1313, 1325, 1395
NlaIV GGNNCC 3 cut(s) 75, 195, 321
NmeAIII GCCGAG 2 cut(s) 55, 895
NmuCI GTSAC 3 cut(s) 415, 463, 835
NsiI ATGCAT 1 cut(s) 1372
NspI RCATGY 1 cut(s) 824
OliI CACNNNNGTG 1 cut(s) 951
PagI TCATGA 1 cut(s) 1321
PceI AGGCCT 2 cut(s) 340, 906
PciI ACATGT 1 cut(s) 820
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 2 cut(s) 680, 1317
PfeI GAWTC 3 cut(s) 171, 251, 653
PkrI GCNGC 6 cut(s) 7, 121, 151, 862, 1094, 1104
PleI GAGTC 2 cut(s) 131, 470
PpsI GAGTC 2 cut(s) 131, 470
PscI ACATGT 1 cut(s) 820
PsiI TTATAA 1 cut(s) 1074
PspN4I GGNNCC 3 cut(s) 75, 195, 321
PspPI GGNCC 3 cut(s) 121, 707, 749
PsrI GAACNNNNNNTAC 2 cut(s) 1051, 1083
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 2 cut(s) 754, 1249
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 744, 1406
RsaNI GTAC 2 cut(s) 743, 1405
RseI CAYNNNNRTG 2 cut(s) 951, 1412
SaqAI TTAA 5 cut(s) 45, 375, 495, 1113, 1193
SatI GCNGC 6 cut(s) 6, 120, 150, 861, 1093, 1103
Sau3AI GATC 2 cut(s) 754, 1249
Sau96I GGNCC 3 cut(s) 121, 707, 749
ScaI AGTACT 1 cut(s) 744
SchI GAGTC 2 cut(s) 131, 471
SduI GDGCHC 6 cut(s) 78, 186, 198, 793, 916, 958
SfaNI GCATC 7 cut(s) 235, 565, 718, 799, 1042, 1276, 1379
SinI GGWCC 2 cut(s) 707, 749
SmiMI CAYNNNNRTG 2 cut(s) 951, 1412
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 7 cut(s) 256, 328, 401, 486, 499, 884, 1417
SseBI AGGCCT 2 cut(s) 340, 906
SsiI CCGC 3 cut(s) 119, 150, 571
SspMI CTAG 8 cut(s) 50, 116, 129, 345, 411, 920, 951, 1233
StuI AGGCCT 2 cut(s) 340, 906
StyI CCWWGG 3 cut(s) 104, 344, 457
TaaI ACNGT 3 cut(s) 303, 700, 711
TaiI ACGT 1 cut(s) 994
TaqI TCGA 3 cut(s) 388, 651, 807
TaqII GACCGA 1 cut(s) 737
TasI AATT 7 cut(s) 256, 328, 401, 486, 499, 884, 1417
TatI WGTACW 2 cut(s) 742, 1404
TauI GCSGC 2 cut(s) 122, 152
TfiI GAWTC 3 cut(s) 171, 251, 653
Tru1I TTAA 5 cut(s) 45, 375, 495, 1113, 1193
Tru9I TTAA 5 cut(s) 45, 375, 495, 1113, 1193
TseFI GTSAC 3 cut(s) 415, 463, 835
TseI GCWGC 4 cut(s) 5, 860, 1092, 1102
Tsp45I GTSAC 3 cut(s) 415, 463, 835
TspDTI ATGAA 5 cut(s) 627, 957, 1076, 1310, 1326
TspGWI ACGGA 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 2 cut(s) 789, 954
VpaK11BI GGWCC 2 cut(s) 707, 749
XapI RAATTY 2 cut(s) 328, 401
XceI RCATGY 1 cut(s) 824
XmaJI CCTAGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 879
XmnI GAANNNNTTC 2 cut(s) 680, 1317
XspI CTAG 8 cut(s) 50, 116, 129, 345, 411, 920, 951, 1233
ZrmI AGTACT 1 cut(s) 744
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.