DNA-directed 5'-3' RNA polymerase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 296 |
| AfaI | GTAC | 3 cut(s) | 63, 436, 458 |
| AgsI | TTSAA | 3 cut(s) | 41, 147, 155 |
| AluBI | AGCT | 1 cut(s) | 383 |
| AluI | AGCT | 1 cut(s) | 383 |
| AlwI | GGATC | 1 cut(s) | 296 |
| AoxI | GGCC | 2 cut(s) | 110, 446 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AspS9I | GGNCC | 2 cut(s) | 204, 316 |
| AvaII | GGWCC | 2 cut(s) | 204, 316 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BccI | CCATC | 3 cut(s) | 50, 253, 327 |
| BclI | TGATCA | 2 cut(s) | 166, 223 |
| BfaI | CTAG | 2 cut(s) | 33, 399 |
| Bme18I | GGWCC | 2 cut(s) | 204, 316 |
| BmgT120I | GGNCC | 2 cut(s) | 204, 316 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 409, 441 |
| BpuEI | CTTGAG | 2 cut(s) | 311, 411 |
| BsaJI | CCNNGG | 1 cut(s) | 331 |
| BseDI | CCNNGG | 1 cut(s) | 331 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseMII | CTCAG | 1 cut(s) | 407 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BshFI | GGCC | 2 cut(s) | 112, 448 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 2 cut(s) | 112, 448 |
| Bsp1286I | GDGCHC | 1 cut(s) | 330 |
| Bsp143I | GATC | 3 cut(s) | 166, 223, 301 |
| BspANI | GGCC | 2 cut(s) | 112, 448 |
| BspCNI | CTCAG | 1 cut(s) | 408 |
| BspHI | TCATGA | 1 cut(s) | 337 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BssECI | CCNNGG | 1 cut(s) | 331 |
| BssMI | GATC | 3 cut(s) | 166, 223, 301 |
| BssT1I | CCWWGG | 1 cut(s) | 331 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDEI | CTNAG | 1 cut(s) | 416 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstKTI | GATC | 3 cut(s) | 169, 226, 304 |
| BstMBI | GATC | 3 cut(s) | 166, 223, 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 126 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuRI | GGCC | 2 cut(s) | 112, 448 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsIMutI | CAGTG | 2 cut(s) | 109, 413 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| CciI | TCATGA | 1 cut(s) | 337 |
| Cfr13I | GGNCC | 2 cut(s) | 204, 316 |
| Csp6I | GTAC | 3 cut(s) | 62, 435, 457 |
| CviAII | CATG | 4 cut(s) | 170, 323, 338, 444 |
| CviJI | RGCY | 4 cut(s) | 112, 383, 425, 448 |
| CviKI_1 | RGCY | 4 cut(s) | 112, 383, 425, 448 |
| CviQI | GTAC | 3 cut(s) | 62, 435, 457 |
| DdeI | CTNAG | 1 cut(s) | 416 |
| DpnI | GATC | 3 cut(s) | 168, 225, 303 |
| DpnII | GATC | 3 cut(s) | 166, 223, 301 |
| Eco130I | CCWWGG | 1 cut(s) | 331 |
| Eco47I | GGWCC | 2 cut(s) | 204, 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 331 |
| FaeI | CATG | 4 cut(s) | 173, 326, 341, 447 |
| FaiI | YATR | 8 cut(s) | 171, 228, 324, 339, 380, 388, 422, 445 |
| FatI | CATG | 4 cut(s) | 169, 322, 337, 443 |
| FbaI | TGATCA | 2 cut(s) | 166, 223 |
| FokI | GGATG | 1 cut(s) | 233 |
| FspBI | CTAG | 2 cut(s) | 33, 399 |
| HaeIII | GGCC | 2 cut(s) | 112, 448 |
| Hin1II | CATG | 4 cut(s) | 173, 326, 341, 447 |
| HinfI | GANTC | 1 cut(s) | 293 |
| Hpy188I | TCNGA | 1 cut(s) | 48 |
| Hpy188III | TCNNGA | 1 cut(s) | 338 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 83, 278, 443 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 126 |
| HpyF3I | CTNAG | 1 cut(s) | 416 |
| Hsp92II | CATG | 4 cut(s) | 173, 326, 341, 447 |
| Ksp22I | TGATCA | 2 cut(s) | 166, 223 |
| Kzo9I | GATC | 3 cut(s) | 166, 223, 301 |
| LpnPI | CCDG | 2 cut(s) | 254, 331 |
| MaeI | CTAG | 2 cut(s) | 33, 399 |
| MaeIII | GTNAC | 2 cut(s) | 174, 211 |
| MalI | GATC | 3 cut(s) | 168, 225, 303 |
| MboI | GATC | 3 cut(s) | 166, 223, 301 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MhlI | GDGCHC | 1 cut(s) | 330 |
| MluCI | AATT | 3 cut(s) | 239, 279, 438 |
| MlyI | GAGTC | 1 cut(s) | 302 |
| MnlI | CCTC | 3 cut(s) | 86, 102, 367 |
| MseI | TTAA | 1 cut(s) | 245 |
| MunI | CAATTG | 1 cut(s) | 438 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 126 |
| NdeII | GATC | 3 cut(s) | 166, 223, 301 |
| NlaIII | CATG | 4 cut(s) | 173, 326, 341, 447 |
| NmuCI | GTSAC | 1 cut(s) | 174 |
| PagI | TCATGA | 1 cut(s) | 337 |
| PctI | GAATGC | 1 cut(s) | 347 |
| PleI | GAGTC | 1 cut(s) | 301 |
| PpsI | GAGTC | 1 cut(s) | 301 |
| PspPI | GGNCC | 2 cut(s) | 204, 316 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| RsaI | GTAC | 3 cut(s) | 63, 436, 458 |
| RsaNI | GTAC | 3 cut(s) | 62, 435, 457 |
| SaqAI | TTAA | 1 cut(s) | 245 |
| Sau3AI | GATC | 3 cut(s) | 166, 223, 301 |
| Sau96I | GGNCC | 2 cut(s) | 204, 316 |
| SchI | GAGTC | 1 cut(s) | 302 |
| SduI | GDGCHC | 1 cut(s) | 330 |
| SetI | ASST | 5 cut(s) | 97, 199, 273, 318, 385 |
| SinI | GGWCC | 2 cut(s) | 204, 316 |
| SmlI | CTYRAG | 2 cut(s) | 290, 426 |
| SmoI | CTYRAG | 2 cut(s) | 290, 426 |
| Sse9I | AATT | 3 cut(s) | 239, 279, 438 |
| SspI | AATATT | 2 cut(s) | 79, 158 |
| SspMI | CTAG | 2 cut(s) | 33, 399 |
| StyI | CCWWGG | 1 cut(s) | 331 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaqI | TCGA | 2 cut(s) | 91, 391 |
| TasI | AATT | 3 cut(s) | 239, 279, 438 |
| TatI | WGTACW | 3 cut(s) | 61, 434, 456 |
| Tru1I | TTAA | 1 cut(s) | 245 |
| Tru9I | TTAA | 1 cut(s) | 245 |
| TscAI | CASTG | 2 cut(s) | 109, 420 |
| TseFI | GTSAC | 1 cut(s) | 174 |
| Tsp45I | GTSAC | 1 cut(s) | 174 |
| TspDTI | ATGAA | 3 cut(s) | 39, 324, 354 |
| TspRI | CASTG | 2 cut(s) | 109, 420 |
| VpaK11BI | GGWCC | 2 cut(s) | 204, 316 |
| XspI | CTAG | 2 cut(s) | 33, 399 |