Rmu_sc0002784.1_g000047

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002784.1
OG0000089
Physical Location & Seq
Forward (+)
197020 .. 202322
5303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002784.1_g000047.1.cds

Sequence Viewer

Length: 1491 bp
atggctggtgatgcaaagatgagaagttctcacaagaggaaacatgctcgggaagccacacaagcatcaaaggtttctcatgcaggggataagcatatacaagttagtccagaactatgtcaagatacattaaaaccatgtgatgagagtccagaacctaacatccaacaccactcaccttccacaaaagaagtggtacaagaagatgcaccatcgtcacaagattcaactgtagacccgagaggacttaagaaagctaggggtccaacgaaaatgaaagatattgctgtggagcctggaagtcgaattcatgttgaatttactgataaaggtgaaccatgtggtgagggctcagttagtttgtcttcttatttaggcccacttgtacgagaacacgtacctgtaacactccacgattggaggaagcttggtgatgacataaaagtagttttgtggaaatcaattcaggcaagatttgacttggaggaggaatggcagaaggctgtcgtatttaaatcgatgggatgcatatggagggcctcaaagtcaaggttagtgagccaaatacaggaggccaaaaacaaaggagaaagacttcgactccaacctaagaacattcaaagtagagtagagtggaaagggttcatccgtgcaaaaactagtccagcatttaaggtactcgaaggacgttggcattcaagtgatccaaaagagttagtaaatggtattcctcttggacctaatgccatgatagtttgggtagatattccaaagaattatgaagcgtttttatggaggcctacaatagatatgacatgcattgaagatgccgtgaattctgctatagcatggcctactaacaaagttgttttggaaaagatatcagaaagtcaagatggtgaaattgcatcctctccttcgagtgtcaactccaaatcaaagaaaaggtgcaagttgttggatgttagtggatcgggacaaatagttactgaaggacgttggtcctcaagtgatccagatcaggttgttcattttgttcccttggggcctaatgctatgagagtttgggtagatacaccgaaagtcccaactgcatccctttggaggccatcatctgagctggaaattattgaagatgctattggtaaccatcgagaaggaaaatcgccaatcatcgaagcactaagcgagatagtctccgctagcggaacttctccatttccatcttgcaagcgagatagtctccgcgagccagtctccgataaagacaactccgttagcgagaattctcccttaatacctgggaagaccggcaccgctgaccgcaacgccatgcaccaggctaccaccaggcaggtcttcgtgacattgccggccgcttatcatcagcggagggacttccgccagcggcgattccctaggcagctcctcaccttgacaacgaccacaacgcggcgttgcagtcaaaacatggtcctccgggacaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

496

Amino Acids

55.39

Weight (kDa)

9.17

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1345
AccB1I GGYRCC 1 cut(s) 1313
AccI GTMKAC 1 cut(s) 234
AccII CGCG 2 cut(s) 1248, 1453
AclWI GGATC 3 cut(s) 698, 979, 1007
AcoI YGGCCR 1 cut(s) 1374
AcsI RAATTY 4 cut(s) 306, 317, 835, 1285
AcuI CTGAAG 1 cut(s) 1011
AfaI GTAC 4 cut(s) 198, 387, 399, 678
AfiI CCNNNNNNNGG 3 cut(s) 568, 1104, 1452
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 6 cut(s) 228, 317, 620, 699, 824, 1133
AhlI ACTAGT 1 cut(s) 659
AjnI CCWGG 4 cut(s) 295, 1300, 1338, 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 1125, 1157
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 257, 427, 1120, 1426
AluI AGCT 4 cut(s) 257, 427, 1120, 1426
Alw26I GTCTC 3 cut(s) 1201, 1247, 1261
AlwI GGATC 3 cut(s) 698, 979, 1007
Ama87I CYCGRG 2 cut(s) 48, 238
AoxI GGCC 8 cut(s) 376, 537, 573, 797, 851, 1046, 1106, 1374
ApeKI GCWGC 1 cut(s) 1423
ApoI RAATTY 4 cut(s) 306, 317, 835, 1285
Asp700I GAANNNNTTC 2 cut(s) 594, 641
AspA2I CCTAGG 1 cut(s) 1418
AspS9I GGNCC 7 cut(s) 263, 377, 537, 737, 1002, 1046, 1474
AsuC2I CCSGG 1 cut(s) 1481
AsuHPI GGTGA 7 cut(s) 20, 168, 344, 356, 443, 911, 1423
AsuNHI GCTAGC 1 cut(s) 1202
AvaI CYCGRG 2 cut(s) 48, 238
AvaII GGWCC 4 cut(s) 263, 737, 1002, 1474
AvrII CCTAGG 1 cut(s) 1418
BanI GGYRCC 1 cut(s) 1313
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 357, 1313, 1351
BbvI GCAGC 1 cut(s) 1435
BccI CCATC 6 cut(s) 220, 514, 890, 1117, 1158, 1231
BceAI ACGGC 1 cut(s) 815
BciT130I CCWGG 4 cut(s) 297, 1302, 1340, 1351
BcnI CCSGG 1 cut(s) 1481
BcoDI GTCTC 3 cut(s) 1201, 1247, 1261
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 4 cut(s) 258, 660, 1203, 1419
BfmI CTRYAG 2 cut(s) 231, 843
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 1345
BisI GCNGC 4 cut(s) 1377, 1409, 1424, 1454
BlnI CCTAGG 1 cut(s) 1418
BlsI GCNGC 4 cut(s) 1378, 1410, 1425, 1455
Bme1390I CCNGG 5 cut(s) 297, 1302, 1340, 1351, 1481
Bme18I GGWCC 4 cut(s) 263, 737, 1002, 1474
BmeT110I CYCGRG 2 cut(s) 48, 238
BmgT120I GGNCC 7 cut(s) 263, 377, 537, 737, 1002, 1046, 1474
BmiI GGNNCC 4 cut(s) 264, 294, 1047, 1315
BmrFI CCNGG 5 cut(s) 297, 1302, 1340, 1351, 1481
BmsI GCATC 7 cut(s) 74, 196, 515, 817, 917, 1103, 1126
BmtI GCTAGC 1 cut(s) 1206
BoxI GACNNNNGTC 1 cut(s) 1000
BpiI GAAGAC 3 cut(s) 357, 1313, 1351
BplI GAGNNNNNCTC 8 cut(s) 13, 45, 1181, 1213, 1227, 1259, 1241, 1273
BpuEI CTTGAG 1 cut(s) 991
BpuMI CCSGG 1 cut(s) 1481
Bsa29I ATCGAT 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 1017
BsaJI CCNNGG 3 cut(s) 1041, 1301, 1418
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 1104, 1452
Bse118I RCCGGY 2 cut(s) 1310, 1372
Bse1I ACTGG 1 cut(s) 1253
Bse3DI GCAATG 1 cut(s) 1367
Bse8I GATNNNNATC 1 cut(s) 1017
BseBI CCWGG 4 cut(s) 297, 1302, 1340, 1351
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 3 cut(s) 1041, 1301, 1418
BseGI GGATG 6 cut(s) 162, 530, 645, 908, 967, 1094
BseJI GATNNNNATC 1 cut(s) 1017
BseLI CCNNNNNNNGG 3 cut(s) 568, 1104, 1452
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 2 cut(s) 366, 1107
BseNI ACTGG 1 cut(s) 1253
BseRI GAGGAG 2 cut(s) 500, 1418
BseX3I CGGCCG 1 cut(s) 1374
BseXI GCAGC 1 cut(s) 1435
Bsh1236I CGCG 2 cut(s) 1248, 1453
Bsh1285I CGRYCG 1 cut(s) 1377
BshFI GGCC 8 cut(s) 378, 539, 575, 799, 853, 1048, 1108, 1376
BshNI GGYRCC 1 cut(s) 1313
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 1377
BsiHKCI CYCGRG 2 cut(s) 48, 238
BsiSI CCGG 3 cut(s) 1311, 1373, 1480
BslFI GGGAC 3 cut(s) 990, 1070, 1409
BslI CCNNNNNNNGG 3 cut(s) 568, 1104, 1452
BsmAI GTCTC 3 cut(s) 1201, 1247, 1261
BsmFI GGGAC 3 cut(s) 990, 1070, 1409
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 8 cut(s) 378, 539, 575, 799, 853, 1048, 1108, 1376
BsoBI CYCGRG 2 cut(s) 48, 238
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 703, 971, 1012, 1018
BspANI GGCC 8 cut(s) 378, 539, 575, 799, 853, 1048, 1108, 1376
BspCNI CTCAG 2 cut(s) 365, 1108
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 2 cut(s) 1248, 1453
BspLI GGNNCC 4 cut(s) 264, 294, 1047, 1315
BspMI ACCTGC 1 cut(s) 1345
BspOI GCTAGC 1 cut(s) 1206
BspPI GGATC 3 cut(s) 698, 979, 1007
BspT107I GGYRCC 1 cut(s) 1313
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 1367
BsrFI RCCGGY 2 cut(s) 1310, 1372
BsrI ACTGG 1 cut(s) 1253
BssAI RCCGGY 2 cut(s) 1310, 1372
BssECI CCNNGG 3 cut(s) 1041, 1301, 1418
BssMI GATC 4 cut(s) 703, 971, 1012, 1018
BssT1I CCWWGG 2 cut(s) 1041, 1418
Bst2UI CCWGG 4 cut(s) 297, 1302, 1340, 1351
Bst4CI ACNGT 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 5 cut(s) 1204, 1232, 1250, 1374, 1406
BstDEI CTNAG 4 cut(s) 352, 609, 1116, 1184
BstEII GGTNACC 1 cut(s) 1145
BstF5I GGATG 6 cut(s) 162, 530, 645, 908, 967, 1094
BstFNI CGCG 2 cut(s) 1248, 1453
BstKTI GATC 4 cut(s) 706, 974, 1015, 1021
BstMAI GTCTC 3 cut(s) 1201, 1247, 1261
BstMBI GATC 4 cut(s) 703, 971, 1012, 1018
BstMCI CGRYCG 1 cut(s) 1377
BstMWI GCNNNNNNNGC 3 cut(s) 11, 53, 62
BstNI CCWGG 4 cut(s) 297, 1302, 1340, 1351
BstNSI RCATGY 2 cut(s) 47, 819
BstPAI GACNNNNGTC 1 cut(s) 1000
BstPI GGTNACC 1 cut(s) 1145
BstSCI CCNGG 5 cut(s) 295, 1300, 1338, 1349, 1479
BstSFI CTRYAG 2 cut(s) 231, 843
BstUI CGCG 2 cut(s) 1248, 1453
BstV1I GCAGC 1 cut(s) 1435
BstV2I GAAGAC 3 cut(s) 357, 1313, 1351
BstZI CGGCCG 1 cut(s) 1374
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 8 cut(s) 378, 539, 575, 799, 853, 1048, 1108, 1376
BsuTUI ATCGAT 1 cut(s) 518
BtsCI GGATG 6 cut(s) 162, 530, 645, 908, 967, 1094
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 5 cut(s) 1204, 1232, 1250, 1374, 1406
Cfr10I RCCGGY 2 cut(s) 1310, 1372
Cfr13I GGNCC 7 cut(s) 263, 377, 537, 737, 1002, 1046, 1474
ClaI ATCGAT 1 cut(s) 518
Csp6I GTAC 4 cut(s) 197, 386, 398, 677
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviQI GTAC 4 cut(s) 197, 386, 398, 677
DdeI CTNAG 4 cut(s) 352, 609, 1116, 1184
DpnI GATC 4 cut(s) 705, 973, 1014, 1020
DpnII GATC 4 cut(s) 703, 971, 1012, 1018
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 1374
EagI CGGCCG 1 cut(s) 1374
EciI GGCGGA 1 cut(s) 1391
EclXI CGGCCG 1 cut(s) 1374
Eco130I CCWWGG 2 cut(s) 1041, 1418
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 882
Eco47I GGWCC 4 cut(s) 263, 737, 1002, 1474
Eco52I CGGCCG 1 cut(s) 1374
Eco57I CTGAAG 1 cut(s) 1011
Eco88I CYCGRG 2 cut(s) 48, 238
Eco91I GGTNACC 1 cut(s) 1145
EcoO109I RGGNCCY 2 cut(s) 537, 1046
EcoO65I GGTNACC 1 cut(s) 1145
EcoRI GAATTC 3 cut(s) 306, 835, 1285
EcoRII CCWGG 4 cut(s) 295, 1300, 1338, 1349
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 2 cut(s) 1041, 1418
EcoT22I ATGCAT 2 cut(s) 530, 821
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 2 cut(s) 1041, 1418
FaqI GGGAC 3 cut(s) 990, 1070, 1409
FauNDI CATATG 1 cut(s) 530
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 1377, 1409, 1424, 1454
FokI GGATG 6 cut(s) 149, 537, 632, 895, 974, 1081
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 1377, 1409, 1424, 1454
FspBI CTAG 4 cut(s) 258, 660, 1203, 1419
GluI GCNGC 4 cut(s) 1377, 1409, 1424, 1454
HaeIII GGCC 8 cut(s) 378, 539, 575, 799, 853, 1048, 1108, 1376
HapII CCGG 3 cut(s) 1311, 1373, 1480
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 148, 224, 600, 1413
HpaII CCGG 3 cut(s) 1311, 1373, 1480
HphI GGTGA 7 cut(s) 20, 168, 344, 356, 443, 911, 1423
Hpy166II GTNNAC 3 cut(s) 235, 335, 928
Hpy188I TCNGA 3 cut(s) 886, 1117, 1261
Hpy188III TCNNGA 9 cut(s) 50, 110, 122, 152, 893, 975, 1016, 1154, 1363
Hpy8I GTNNAC 3 cut(s) 235, 335, 928
HpyAV CCTTC 6 cut(s) 189, 493, 677, 927, 986, 1151
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 396, 688, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 53, 62
HpyF3I CTNAG 4 cut(s) 352, 609, 1116, 1184
HpySE526I ACGT 3 cut(s) 396, 688, 997
KroI GCCGGC 1 cut(s) 1372
KroNI GCCGGC 1 cut(s) 1374
Kzo9I GATC 4 cut(s) 703, 971, 1012, 1018
LmnI GCTCC 2 cut(s) 292, 1431
Lsp1109I GCAGC 1 cut(s) 1435
LweI GCATC 7 cut(s) 74, 196, 515, 817, 917, 1103, 1126
MaeI CTAG 4 cut(s) 258, 660, 1203, 1419
MaeII ACGT 3 cut(s) 396, 688, 997
MaeIII GTNAC 5 cut(s) 216, 403, 985, 1145, 1363
MalI GATC 4 cut(s) 705, 973, 1014, 1020
MboI GATC 4 cut(s) 703, 971, 1012, 1018
MboII GAAGA 6 cut(s) 215, 357, 836, 1145, 1318, 1351
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 8 cut(s) 306, 317, 462, 775, 835, 903, 1125, 1285
MlyI GAGTC 2 cut(s) 157, 594
MmeI TCCRAC 4 cut(s) 190, 290, 628, 939
Mph1103I ATGCAT 2 cut(s) 530, 821
MroNI GCCGGC 1 cut(s) 1372
MroXI GAANNNNTTC 2 cut(s) 594, 641
MseI TTAA 5 cut(s) 131, 249, 513, 672, 1295
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 3 cut(s) 1319, 1390, 1408
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 3 cut(s) 1311, 1373, 1480
MspR9I CCNGG 5 cut(s) 297, 1302, 1340, 1351, 1481
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 4 cut(s) 297, 1302, 1340, 1351
MvnI CGCG 2 cut(s) 1248, 1453
MwoI GCNNNNNNNGC 3 cut(s) 11, 53, 62
NaeI GCCGGC 1 cut(s) 1374
NciI CCSGG 1 cut(s) 1481
NdeI CATATG 1 cut(s) 530
NdeII GATC 4 cut(s) 703, 971, 1012, 1018
NgoMIV GCCGGC 1 cut(s) 1372
NheI GCTAGC 1 cut(s) 1202
NlaIV GGNNCC 4 cut(s) 264, 294, 1047, 1315
NmuCI GTSAC 2 cut(s) 216, 1363
NsiI ATGCAT 2 cut(s) 530, 821
NspI RCATGY 2 cut(s) 47, 819
PceI AGGCCT 1 cut(s) 799
PctI GAATGC 1 cut(s) 694
PdiI GCCGGC 1 cut(s) 1374
PdmI GAANNNNTTC 2 cut(s) 594, 641
PfeI GAWTC 2 cut(s) 224, 1413
PfoI TCCNGGA 1 cut(s) 1479
PkrI GCNGC 4 cut(s) 1378, 1410, 1425, 1455
PleI GAGTC 2 cut(s) 156, 594
PpsI GAGTC 2 cut(s) 156, 594
Ppu21I YACGTR 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 1000
Psp6I CCWGG 4 cut(s) 295, 1300, 1338, 1349
PspEI GGTNACC 1 cut(s) 1145
PspGI CCWGG 4 cut(s) 295, 1300, 1338, 1349
PspN4I GGNNCC 4 cut(s) 264, 294, 1047, 1315
PspPI GGNCC 7 cut(s) 263, 377, 537, 737, 1002, 1046, 1474
RsaI GTAC 4 cut(s) 198, 387, 399, 678
RsaNI GTAC 4 cut(s) 197, 386, 398, 677
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 5 cut(s) 131, 249, 513, 672, 1295
SatI GCNGC 4 cut(s) 1377, 1409, 1424, 1454
Sau3AI GATC 4 cut(s) 703, 971, 1012, 1018
Sau96I GGNCC 7 cut(s) 263, 377, 537, 737, 1002, 1046, 1474
SchI GAGTC 2 cut(s) 157, 594
ScrFI CCNGG 5 cut(s) 297, 1302, 1340, 1351, 1481
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 7 cut(s) 74, 196, 515, 817, 917, 1103, 1126
SfcI CTRYAG 2 cut(s) 231, 843
SinI GGWCC 4 cut(s) 263, 737, 1002, 1474
SmiI ATTTAAAT 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 248, 1006
SmoI CTYRAG 2 cut(s) 248, 1006
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 8 cut(s) 306, 317, 462, 775, 835, 903, 1125, 1285
SseBI AGGCCT 1 cut(s) 799
SspMI CTAG 4 cut(s) 258, 660, 1203, 1419
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 5 cut(s) 295, 1300, 1338, 1349, 1479
StyI CCWWGG 2 cut(s) 1041, 1418
SwaI ATTTAAAT 1 cut(s) 514
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 3 cut(s) 399, 691, 1000
TaqI TCGA 7 cut(s) 304, 518, 598, 681, 920, 1153, 1176
TasI AATT 8 cut(s) 306, 317, 462, 775, 835, 903, 1125, 1285
TauI GCSGC 3 cut(s) 1379, 1411, 1456
TfiI GAWTC 2 cut(s) 224, 1413
Tru1I TTAA 5 cut(s) 131, 249, 513, 672, 1295
Tru9I TTAA 5 cut(s) 131, 249, 513, 672, 1295
TseFI GTSAC 2 cut(s) 216, 1363
TseI GCWGC 1 cut(s) 1423
Tsp45I GTSAC 2 cut(s) 216, 1363
TspDTI ATGAA 5 cut(s) 290, 299, 634, 795, 1019
TspGWI ACGGA 2 cut(s) 638, 1264
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 4 cut(s) 263, 737, 1002, 1474
XapI RAATTY 4 cut(s) 306, 317, 835, 1285
XceI RCATGY 2 cut(s) 47, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmaJI CCTAGG 1 cut(s) 1418
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 2 cut(s) 594, 641
XspI CTAG 4 cut(s) 258, 660, 1203, 1419
Zsp2I ATGCAT 2 cut(s) 530, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.