DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 153 - 222 | 2.8e-07 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 692 |
| AccII | CGCG | 1 cut(s) | 335 |
| AciI | CCGC | 3 cut(s) | 42, 141, 425 |
| AclWI | GGATC | 2 cut(s) | 494, 677 |
| AcsI | RAATTY | 1 cut(s) | 549 |
| AfaI | GTAC | 2 cut(s) | 437, 723 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 147, 383, 692 |
| AgsI | TTSAA | 6 cut(s) | 56, 66, 155, 165, 607, 707 |
| AjnI | CCWGG | 1 cut(s) | 685 |
| AleI | CACNNNNGTG | 1 cut(s) | 209 |
| AluBI | AGCT | 5 cut(s) | 23, 122, 509, 581, 613 |
| AluI | AGCT | 5 cut(s) | 23, 122, 509, 581, 613 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw44I | GTGCAC | 1 cut(s) | 557 |
| AlwI | GGATC | 2 cut(s) | 494, 677 |
| Ama87I | CYCGRG | 2 cut(s) | 90, 189 |
| AoxI | GGCC | 2 cut(s) | 128, 532 |
| ApaLI | GTGCAC | 1 cut(s) | 557 |
| ApeKI | GCWGC | 3 cut(s) | 23, 122, 422 |
| ApoI | RAATTY | 1 cut(s) | 549 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 2 cut(s) | 335, 337 |
| AsuHPI | GGTGA | 4 cut(s) | 69, 106, 168, 205 |
| AvaI | CYCGRG | 2 cut(s) | 90, 189 |
| BaeGI | GKGCMC | 1 cut(s) | 561 |
| BbsI | GAAGAC | 2 cut(s) | 63, 162 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BbvI | GCAGC | 3 cut(s) | 10, 109, 434 |
| BccI | CCATC | 1 cut(s) | 94 |
| BciT130I | CCWGG | 1 cut(s) | 687 |
| BfaI | CTAG | 5 cut(s) | 6, 105, 270, 530, 624 |
| BfmI | CTRYAG | 1 cut(s) | 672 |
| BisI | GCNGC | 3 cut(s) | 24, 123, 423 |
| BlsI | GCNGC | 3 cut(s) | 25, 124, 424 |
| Bme1390I | CCNGG | 1 cut(s) | 687 |
| BmeT110I | CYCGRG | 2 cut(s) | 90, 189 |
| BmiI | GGNNCC | 1 cut(s) | 375 |
| BmrFI | CCNGG | 1 cut(s) | 687 |
| BmsI | GCATC | 7 cut(s) | 53, 152, 289, 409, 526, 607, 629 |
| BpiI | GAAGAC | 2 cut(s) | 63, 162 |
| BsaJI | CCNNGG | 2 cut(s) | 89, 188 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 147, 383, 692 |
| Bse1I | ACTGG | 1 cut(s) | 484 |
| BseBI | CCWGG | 1 cut(s) | 687 |
| BseDI | CCNNGG | 2 cut(s) | 89, 188 |
| BseGI | GGATG | 3 cut(s) | 34, 133, 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 147, 383, 692 |
| BseNI | ACTGG | 1 cut(s) | 484 |
| BsePI | GCGCGC | 1 cut(s) | 333 |
| BseRI | GAGGAG | 2 cut(s) | 78, 177 |
| BseSI | GKGCMC | 1 cut(s) | 561 |
| BseXI | GCAGC | 3 cut(s) | 10, 109, 434 |
| Bsh1236I | CGCG | 1 cut(s) | 335 |
| BshFI | GGCC | 2 cut(s) | 130, 534 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 2 cut(s) | 90, 189 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 147, 383, 692 |
| BsnI | GGCC | 2 cut(s) | 130, 534 |
| BsoBI | CYCGRG | 2 cut(s) | 90, 189 |
| Bsp1286I | GDGCHC | 1 cut(s) | 561 |
| Bsp1407I | TGTACA | 1 cut(s) | 721 |
| Bsp143I | GATC | 2 cut(s) | 499, 682 |
| BspACI | CCGC | 3 cut(s) | 42, 141, 425 |
| BspANI | GGCC | 2 cut(s) | 130, 534 |
| BspFNI | CGCG | 1 cut(s) | 335 |
| BspHI | TCATGA | 1 cut(s) | 571 |
| BspLI | GGNNCC | 1 cut(s) | 375 |
| BspPI | GGATC | 2 cut(s) | 494, 677 |
| BsrGI | TGTACA | 1 cut(s) | 721 |
| BsrI | ACTGG | 1 cut(s) | 484 |
| BssECI | CCNNGG | 2 cut(s) | 89, 188 |
| BssHII | GCGCGC | 1 cut(s) | 333 |
| BssMI | GATC | 2 cut(s) | 499, 682 |
| Bst2UI | CCWGG | 1 cut(s) | 687 |
| Bst4CI | ACNGT | 2 cut(s) | 266, 649 |
| Bst6I | CTCTTC | 2 cut(s) | 67, 166 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 523 |
| BstAUI | TGTACA | 1 cut(s) | 721 |
| BstC8I | GCNNGC | 2 cut(s) | 290, 335 |
| BstDEI | CTNAG | 1 cut(s) | 443 |
| BstF5I | GGATG | 3 cut(s) | 34, 133, 724 |
| BstFNI | CGCG | 1 cut(s) | 335 |
| BstHHI | GCGC | 2 cut(s) | 335, 337 |
| BstKTI | GATC | 2 cut(s) | 502, 685 |
| BstMBI | GATC | 2 cut(s) | 499, 682 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 343, 523 |
| BstNI | CCWGG | 1 cut(s) | 687 |
| BstSCI | CCNGG | 1 cut(s) | 685 |
| BstSFI | CTRYAG | 1 cut(s) | 672 |
| BstSLI | GKGCMC | 1 cut(s) | 561 |
| BstUI | CGCG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 3 cut(s) | 10, 109, 434 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 162 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| BsuRI | GGCC | 2 cut(s) | 130, 534 |
| BtsCI | GGATG | 3 cut(s) | 34, 133, 724 |
| BtsIMutI | CAGTG | 1 cut(s) | 561 |
| Cac8I | GCNNGC | 2 cut(s) | 290, 335 |
| CciI | TCATGA | 1 cut(s) | 571 |
| CfoI | GCGC | 2 cut(s) | 335, 337 |
| Csp6I | GTAC | 2 cut(s) | 436, 722 |
| CviAII | CATG | 4 cut(s) | 521, 536, 572, 642 |
| CviQI | GTAC | 2 cut(s) | 436, 722 |
| DdeI | CTNAG | 1 cut(s) | 443 |
| DpnI | GATC | 2 cut(s) | 501, 684 |
| DpnII | GATC | 2 cut(s) | 499, 682 |
| Eam1104I | CTCTTC | 2 cut(s) | 67, 166 |
| EarI | CTCTTC | 2 cut(s) | 67, 166 |
| Eco88I | CYCGRG | 2 cut(s) | 90, 189 |
| EcoRII | CCWGG | 1 cut(s) | 685 |
| EcoT22I | ATGCAT | 1 cut(s) | 622 |
| FaeI | CATG | 4 cut(s) | 524, 539, 575, 645 |
| FaiI | YATR | 9 cut(s) | 278, 311, 339, 522, 537, 573, 578, 643, 657 |
| FatI | CATG | 4 cut(s) | 520, 535, 571, 641 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 123, 423 |
| FokI | GGATG | 3 cut(s) | 21, 120, 711 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 123, 423 |
| FspBI | CTAG | 5 cut(s) | 6, 105, 270, 530, 624 |
| GlaI | GCGC | 2 cut(s) | 334, 336 |
| GluI | GCNGC | 3 cut(s) | 24, 123, 423 |
| HaeIII | GGCC | 2 cut(s) | 130, 534 |
| HhaI | GCGC | 2 cut(s) | 335, 337 |
| Hin1II | CATG | 4 cut(s) | 524, 539, 575, 645 |
| Hin6I | GCGC | 2 cut(s) | 333, 335 |
| HinP1I | GCGC | 2 cut(s) | 333, 335 |
| HindIII | AAGCTT | 2 cut(s) | 507, 611 |
| HinfI | GANTC | 4 cut(s) | 31, 59, 158, 256 |
| HphI | GGTGA | 4 cut(s) | 69, 106, 168, 205 |
| Hpy166II | GTNNAC | 3 cut(s) | 395, 436, 559 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 4 cut(s) | 503, 572, 624, 714 |
| Hpy8I | GTNNAC | 3 cut(s) | 395, 436, 559 |
| HpyAV | CCTTC | 3 cut(s) | 90, 189, 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 266, 649 |
| HpyCH4V | TGCA | 9 cut(s) | 71, 170, 214, 236, 302, 422, 517, 559, 620 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 343, 523 |
| HpyF3I | CTNAG | 1 cut(s) | 443 |
| Hsp92II | CATG | 4 cut(s) | 524, 539, 575, 645 |
| HspAI | GCGC | 2 cut(s) | 333, 335 |
| Kzo9I | GATC | 2 cut(s) | 499, 682 |
| LmnI | GCTCC | 4 cut(s) | 91, 190, 343, 373 |
| LpnPI | CCDG | 5 cut(s) | 465, 516, 672, 699, 699 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 109, 434 |
| LweI | GCATC | 7 cut(s) | 53, 152, 289, 409, 526, 607, 629 |
| MaeI | CTAG | 5 cut(s) | 6, 105, 270, 530, 624 |
| MalI | GATC | 2 cut(s) | 501, 684 |
| MboI | GATC | 2 cut(s) | 499, 682 |
| MboII | GAAGA | 7 cut(s) | 54, 68, 109, 153, 167, 473, 476 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MhlI | GDGCHC | 1 cut(s) | 561 |
| MluCI | AATT | 2 cut(s) | 226, 549 |
| MlyI | GAGTC | 3 cut(s) | 25, 53, 152 |
| MmeI | TCCRAC | 3 cut(s) | 62, 161, 524 |
| MnlI | CCTC | 8 cut(s) | 99, 141, 198, 321, 537, 620, 732, 738 |
| Mph1103I | ATGCAT | 1 cut(s) | 622 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MseI | TTAA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 209 |
| MspA1I | CMGCKG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 687 |
| MvaI | CCWGG | 1 cut(s) | 687 |
| MvnI | CGCG | 1 cut(s) | 335 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 343, 523 |
| NdeII | GATC | 2 cut(s) | 499, 682 |
| NlaIII | CATG | 4 cut(s) | 524, 539, 575, 645 |
| NlaIV | GGNNCC | 1 cut(s) | 375 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NsiI | ATGCAT | 1 cut(s) | 622 |
| OliI | CACNNNNGTG | 1 cut(s) | 209 |
| PagI | TCATGA | 1 cut(s) | 571 |
| PauI | GCGCGC | 1 cut(s) | 333 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 692 |
| PkrI | GCNGC | 3 cut(s) | 25, 124, 424 |
| PleI | GAGTC | 3 cut(s) | 25, 53, 152 |
| PpsI | GAGTC | 3 cut(s) | 25, 53, 152 |
| PsiI | TTATAA | 1 cut(s) | 311 |
| Psp6I | CCWGG | 1 cut(s) | 685 |
| PspGI | CCWGG | 1 cut(s) | 685 |
| PspN4I | GGNNCC | 1 cut(s) | 375 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| PteI | GCGCGC | 1 cut(s) | 333 |
| RsaI | GTAC | 2 cut(s) | 437, 723 |
| RsaNI | GTAC | 2 cut(s) | 436, 722 |
| RseI | CAYNNNNRTG | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 225 |
| SatI | GCNGC | 3 cut(s) | 24, 123, 423 |
| Sau3AI | GATC | 2 cut(s) | 499, 682 |
| SchI | GAGTC | 3 cut(s) | 25, 53, 152 |
| ScrFI | CCNGG | 1 cut(s) | 687 |
| SduI | GDGCHC | 1 cut(s) | 561 |
| SfaNI | GCATC | 7 cut(s) | 53, 152, 289, 409, 526, 607, 629 |
| SfcI | CTRYAG | 1 cut(s) | 672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 209 |
| SmlI | CTYRAG | 1 cut(s) | 736 |
| SmoI | CTYRAG | 1 cut(s) | 736 |
| Sse9I | AATT | 2 cut(s) | 226, 549 |
| SsiI | CCGC | 3 cut(s) | 42, 141, 425 |
| SspMI | CTAG | 5 cut(s) | 6, 105, 270, 530, 624 |
| StyD4I | CCNGG | 1 cut(s) | 685 |
| TaaI | ACNGT | 2 cut(s) | 266, 649 |
| TasI | AATT | 2 cut(s) | 226, 549 |
| TatI | WGTACW | 2 cut(s) | 435, 721 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 1 cut(s) | 225 |
| Tru9I | TTAA | 1 cut(s) | 225 |
| TscAI | CASTG | 1 cut(s) | 561 |
| TseI | GCWGC | 3 cut(s) | 23, 122, 422 |
| TspDTI | ATGAA | 1 cut(s) | 560 |
| TspGWI | ACGGA | 1 cut(s) | 381 |
| TspRI | CASTG | 1 cut(s) | 561 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 692 |
| VneI | GTGCAC | 1 cut(s) | 557 |
| XapI | RAATTY | 1 cut(s) | 549 |
| XbaI | TCTAGA | 1 cut(s) | 623 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 5 cut(s) | 6, 105, 270, 530, 624 |
| Zsp2I | ATGCAT | 1 cut(s) | 622 |