Rorug02G0319200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000089
Physical Location & Seq
Reverse (-)
39022128 .. 39023586
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0319200.1

Sequence Viewer

Length: 471 bp
ATGGAGCCCGACAGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAATGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAATCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAATCAGAGTGATTCTGAAGAAACAGACCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

156

Amino Acids

16.59

Weight (kDa)

5.18

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 41, 44
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 420
AcvI CACGTG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 2 cut(s) 154, 294
AfiI CCNNNNNNNGG 2 cut(s) 61, 342
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 5 cut(s) 67, 97, 225, 369, 428
AluI AGCT 5 cut(s) 67, 97, 225, 369, 428
Alw21I GWGCWC 2 cut(s) 69, 99
Ama87I CYCGRG 2 cut(s) 340, 453
AoxI GGCC 2 cut(s) 161, 344
ApaI GGGCCC 2 cut(s) 165, 348
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 17, 22
AspS9I GGNCC 4 cut(s) 161, 162, 344, 345
AsuHPI GGTGA 2 cut(s) 175, 184
AvaI CYCGRG 2 cut(s) 340, 453
BaeGI GKGCMC 3 cut(s) 165, 337, 348
BanII GRGCYC 5 cut(s) 9, 69, 99, 165, 348
BbrPI CACGTG 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
Bme1390I CCNGG 1 cut(s) 315
BmeT110I CYCGRG 2 cut(s) 340, 453
BmgT120I GGNCC 4 cut(s) 161, 162, 344, 345
BmiI GGNNCC 4 cut(s) 6, 163, 345, 346
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 15, 271
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 39, 187, 412
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 342
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 39, 187, 412
BseGI GGATG 2 cut(s) 112, 323
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 61, 342
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 154
BseSI GKGCMC 3 cut(s) 165, 337, 348
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 163, 346
BsiHKAI GWGCWC 2 cut(s) 69, 99
BsiHKCI CYCGRG 2 cut(s) 340, 453
BslI CCNNNNNNNGG 2 cut(s) 61, 342
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 163, 346
BsoBI CYCGRG 2 cut(s) 340, 453
Bsp120I GGGCCC 2 cut(s) 161, 344
Bsp1286I GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 3 cut(s) 39, 41, 44
BspANI GGCC 2 cut(s) 163, 346
BspCNI CTCAG 1 cut(s) 386
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 6, 163, 345, 346
BspMI ACCTGC 1 cut(s) 313
BspQI GCTCTTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 39, 187, 412
BssNI GRCGYC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 297, 413
Bst6I CTCTTC 2 cut(s) 106, 266
BstACI GRCGYC 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 95, 223
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 3 cut(s) 39, 187, 412
BstF5I GGATG 2 cut(s) 112, 323
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 3 cut(s) 165, 337, 348
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 163, 346
BtgI CCRYGG 3 cut(s) 39, 187, 412
BtsCI GGATG 2 cut(s) 112, 323
BtsIMutI CAGTG 2 cut(s) 147, 245
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 95, 223
CfoI GCGC 2 cut(s) 17, 22
Cfr13I GGNCC 4 cut(s) 161, 162, 344, 345
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 153, 293
CviAII CATG 2 cut(s) 166, 188
CviQI GTAC 2 cut(s) 153, 293
DdeI CTNAG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 106, 266
EarI CTCTTC 2 cut(s) 106, 266
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 5 cut(s) 9, 69, 99, 165, 348
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 1 cut(s) 420
Eco72I CACGTG 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 340, 453
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoO109I RGGNCCY 2 cut(s) 161, 344
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 5 cut(s) 9, 69, 99, 165, 348
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 169, 191
FaiI YATR 3 cut(s) 167, 189, 449
FatI CATG 2 cut(s) 165, 187
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 2 cut(s) 119, 330
FriOI GRGCYC 5 cut(s) 9, 69, 99, 165, 348
Fsp4HI GCNGC 2 cut(s) 18, 42
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 163, 346
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 17, 22
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 2 cut(s) 169, 191
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HindIII AAGCTT 2 cut(s) 367, 426
HinfI GANTC 3 cut(s) 35, 193, 395
HphI GGTGA 2 cut(s) 175, 184
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 5 cut(s) 64, 106, 376, 390, 400
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 83, 199
HpyCH4III ACNGT 2 cut(s) 297, 413
HpyCH4IV ACGT 2 cut(s) 142, 331
HpyCH4V TGCA 3 cut(s) 28, 140, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 2 cut(s) 142, 331
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 2 cut(s) 169, 191
HspAI GCGC 2 cut(s) 15, 20
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 3 cut(s) 4, 64, 72
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 15, 271
MaeII ACGT 2 cut(s) 142, 331
MboII GAAGA 4 cut(s) 93, 98, 283, 413
MhlI GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
MluCI AATT 2 cut(s) 179, 466
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 4 cut(s) 81, 259, 336, 449
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 2 cut(s) 170, 316
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 315
MteI GCGCNGCGC 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 187
NlaIII CATG 2 cut(s) 169, 191
NlaIV GGNNCC 4 cut(s) 6, 163, 345, 346
PaeR7I CTCGAG 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 193, 395
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 332
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 4 cut(s) 6, 163, 345, 346
PspOMI GGGCCC 2 cut(s) 161, 344
PspPI GGNCC 4 cut(s) 161, 162, 344, 345
PspXI VCTCGAGB 1 cut(s) 453
RsaI GTAC 2 cut(s) 154, 294
RsaNI GTAC 2 cut(s) 153, 293
RseI CAYNNNNRTG 2 cut(s) 170, 316
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 18, 42
Sau96I GGNCC 4 cut(s) 161, 162, 344, 345
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 6 cut(s) 9, 69, 99, 165, 337, 348
SfaNI GCATC 2 cut(s) 15, 271
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 170, 316
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 2 cut(s) 179, 466
SsiI CCGC 3 cut(s) 39, 41, 44
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 297, 413
TaiI ACGT 2 cut(s) 145, 334
TaqI TCGA 2 cut(s) 33, 454
TasI AATT 2 cut(s) 179, 466
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 193, 395
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 2 cut(s) 154, 245
TseI GCWGC 1 cut(s) 17
TspRI CASTG 2 cut(s) 154, 245
XapI RAATTY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.