RLG00000017129

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
13066779 .. 13073043
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017129

Sequence Viewer

Length: 963 bp
ATGCGTACTTTAGGCTTGTGGAATCATAGTGTTGGTGGTCTGAAAACATATAAGGACGAGCCCCAAGGAAATCATAAGCCAACCATCATGGAAAAAGAATGGACCAAATATGAAAGGGAAGAAAGGATTTCAGGAATAAGAATTTCGGATGGAGGTTCTAATAACTCACATAGGGAATCACATACTCCAGCACCTAATAGTCCAATTAGGTGTGAAAATGAGACAACCTCAGATTATTCAAAGAGACCTCCAAGAGGCAAAGCAAAGGGGGATAAAGATTTTAAGAACAATGGTCGGGTTGAAGTTCAGTTCAATGTCAAAGGTCAGCCTTATGGGGAATATGCAGCAGGGTTCTCCTCCTTCCTTGGAGTCACAGCAAGAGAGTTCGTACCATTGACAACTGAGTGGAAAAACCTCACTGATAAGTACAAAAGACAAATTTGGGAACATATCATGCAAAAACATATTGTTCCAGAAATTTGCAAAAGAAATGTGTTCCGTAAAATGATGAAGCTTTGGCGAGATTACAGATCATTGACAATGAAAGAAGTGATGCAGCAAGCTGAATCGGTAGGCTTACCACGTGCTGCTGCCCTCCTCAAACCTGATAATATAGATTCAATGGAAGTGTGGTTGGATTTTGTAAAATCCAGAACCACAGAAGCATTTAGGGAAAAGTGTGAAAGATTCAGAAGCAACAAAGTGAGACACCAGATGCAATATCAAGGTCCGATATTTGGCTTTCGTGCCTATGAAGTGAAGAAAAAAGCAGGCGAAGAAGTCGAGGATCCAGAAATAGTGAAACTAGTCCGAAAGTACAAGGAAGAAGAAGAAATAACACAACCATGTTCATTAAAAACTGATGCTGTTGCAAAGGCACTTGGTCCTGACCCACGAGGACGAGTTAGAGGACTTGGGTTTGGTGCGCTCCCTTCAAAAGTGGAGGGTCAGACACATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

321

Amino Acids

36.93

Weight (kDa)

9.45

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 782, 795
AcsI RAATTY 3 cut(s) 141, 438, 477
AcvI CACGTG 1 cut(s) 584
AfaI GTAC 4 cut(s) 7, 390, 428, 818
AfiI CCNNNNNNNGG 2 cut(s) 254, 737
AgsI TTSAA 5 cut(s) 240, 302, 313, 621, 936
AhlI ACTAGT 1 cut(s) 805
AluBI AGCT 2 cut(s) 514, 563
AluI AGCT 2 cut(s) 514, 563
Alw26I GTCTC 3 cut(s) 215, 238, 700
AlwI GGATC 2 cut(s) 782, 795
ApeKI GCWGC 4 cut(s) 344, 556, 587, 590
ApoI RAATTY 3 cut(s) 141, 438, 477
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 3 cut(s) 102, 728, 884
AvaII GGWCC 3 cut(s) 102, 728, 884
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 894
BbrPI CACGTG 1 cut(s) 584
BbvI GCAGC 4 cut(s) 356, 568, 574, 577
BccI CCATC 2 cut(s) 92, 143
BcoDI GTCTC 3 cut(s) 215, 238, 700
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 1 cut(s) 806
BisI GCNGC 4 cut(s) 345, 557, 588, 591
BlsI GCNGC 4 cut(s) 346, 558, 589, 592
Bme18I GGWCC 3 cut(s) 102, 728, 884
BmgT120I GGNCC 3 cut(s) 102, 728, 884
BmiI GGNNCC 1 cut(s) 789
BmsI GCATC 3 cut(s) 543, 705, 853
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 64, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 737
Bse3DI GCAATG 1 cut(s) 955
BseDI CCNNGG 2 cut(s) 64, 364
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 254, 737
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 2 cut(s) 243, 393
BseRI GAGGAG 2 cut(s) 346, 587
BseXI GCAGC 4 cut(s) 356, 568, 574, 577
BslI CCNNNNNNNGG 2 cut(s) 254, 737
BsmAI GTCTC 3 cut(s) 215, 238, 700
Bso31I GGTCTC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 530, 787
BspCNI CTCAG 2 cut(s) 242, 394
BspLI GGNNCC 1 cut(s) 789
BspPI GGATC 2 cut(s) 782, 795
BspTNI GGTCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 955
BssECI CCNNGG 2 cut(s) 64, 364
BssMI GATC 2 cut(s) 530, 787
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 64, 364
Bst2BI CACGAG 1 cut(s) 894
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 561, 772
BstDEI CTNAG 2 cut(s) 229, 402
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 2 cut(s) 533, 790
BstMAI GTCTC 3 cut(s) 215, 238, 700
BstMBI GATC 2 cut(s) 530, 787
BstV1I GCAGC 4 cut(s) 356, 568, 574, 577
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 561, 772
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 102, 728, 884
Csp6I GTAC 4 cut(s) 6, 389, 427, 817
CviAII CATG 3 cut(s) 88, 454, 846
CviJI RGCY 8 cut(s) 15, 61, 79, 328, 514, 563, 576, 741
CviKI_1 RGCY 8 cut(s) 15, 61, 79, 328, 514, 563, 576, 741
CviQI GTAC 4 cut(s) 6, 389, 427, 817
DdeI CTNAG 2 cut(s) 229, 402
DpnI GATC 2 cut(s) 532, 789
DpnII GATC 2 cut(s) 530, 787
Eco130I CCWWGG 2 cut(s) 64, 364
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 102, 728, 884
Eco72I CACGTG 1 cut(s) 584
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 64, 364
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 64, 364
FaeI CATG 3 cut(s) 91, 457, 849
FatI CATG 3 cut(s) 87, 453, 845
Fnu4HI GCNGC 4 cut(s) 345, 557, 588, 591
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 4 cut(s) 345, 557, 588, 591
FspBI CTAG 1 cut(s) 806
GlaI GCGC 1 cut(s) 927
GluI GCNGC 4 cut(s) 345, 557, 588, 591
GsuI CTGGAG 1 cut(s) 171
HhaI GCGC 1 cut(s) 928
Hin1II CATG 3 cut(s) 91, 457, 849
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 6 cut(s) 22, 176, 369, 566, 617, 687
Hpy188I TCNGA 7 cut(s) 42, 148, 232, 692, 732, 812, 951
Hpy188III TCNNGA 5 cut(s) 132, 473, 651, 791, 887
HpyAV CCTTC 2 cut(s) 370, 942
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 344, 457, 483, 556, 718, 872
HpyF3I CTNAG 2 cut(s) 229, 402
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 3 cut(s) 91, 457, 849
HspAI GCGC 1 cut(s) 926
Kzo9I GATC 2 cut(s) 530, 787
LmnI GCTCC 1 cut(s) 933
Lsp1109I GCAGC 4 cut(s) 356, 568, 574, 577
LweI GCATC 3 cut(s) 543, 705, 853
MaeI CTAG 1 cut(s) 806
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 532, 789
MboI GATC 2 cut(s) 530, 787
MboII GAAGA 6 cut(s) 131, 772, 788, 836, 839, 842
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 4 cut(s) 141, 204, 438, 477
MlyI GAGTC 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 615
MseI TTAA 2 cut(s) 282, 854
MslI CAYNNNNRTG 1 cut(s) 844
NdeII GATC 2 cut(s) 530, 787
NlaIII CATG 3 cut(s) 91, 457, 849
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 370
PfeI GAWTC 5 cut(s) 22, 176, 566, 617, 687
PkrI GCNGC 4 cut(s) 346, 558, 589, 592
PleI GAGTC 1 cut(s) 377
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 584
PspCI CACGTG 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 3 cut(s) 102, 728, 884
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 4 cut(s) 7, 390, 428, 818
RsaNI GTAC 4 cut(s) 6, 389, 427, 817
RseI CAYNNNNRTG 1 cut(s) 844
SaqAI TTAA 2 cut(s) 282, 854
SatI GCNGC 4 cut(s) 345, 557, 588, 591
Sau3AI GATC 2 cut(s) 530, 787
Sau96I GGNCC 3 cut(s) 102, 728, 884
SchI GAGTC 1 cut(s) 378
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 3 cut(s) 543, 705, 853
SinI GGWCC 3 cut(s) 102, 728, 884
SmiMI CAYNNNNRTG 1 cut(s) 844
SpeI ACTAGT 1 cut(s) 805
Sse9I AATT 4 cut(s) 141, 204, 438, 477
SspMI CTAG 1 cut(s) 806
StyI CCWWGG 2 cut(s) 64, 364
TaiI ACGT 1 cut(s) 586
TaqI TCGA 1 cut(s) 783
TasI AATT 4 cut(s) 141, 204, 438, 477
TatI WGTACW 2 cut(s) 426, 816
TfiI GAWTC 5 cut(s) 22, 176, 566, 617, 687
Tru1I TTAA 2 cut(s) 282, 854
Tru9I TTAA 2 cut(s) 282, 854
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 4 cut(s) 344, 556, 587, 590
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 5 cut(s) 126, 524, 557, 768, 840
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 3 cut(s) 102, 728, 884
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 3 cut(s) 141, 438, 477
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.