Rmu_sc0001499.1_g000050

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001499.1
OG0000089
Physical Location & Seq
Forward (+)
157356 .. 158275
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001499.1_g000050.1.cds

Sequence Viewer

Length: 459 bp
atggtgagtgatattacaaaggaaggtcgcagtaagaggaagcgtactaaggaaatcgatggaatatcacaagactttgatgcaagagatgtgaatcccatggcagttgaagatccaagaagattgaaaaagaagagaggtccaaccaaaatgaagaaagttgctatggaccctgagagtcggattcaagttcaatttaatagcttaggtgaaccatatggaaaggggtcagtaagcttgtcatctttttttagccctcttgtacgagagcatgtatctgtaacacttgatgattggaggaaccttggtgatgaccttaaagtaccattatgggaagaagttcagacacaccgccaggcgggctacagccacagcgtcagaccacctccagatcgccaccgacgcacctccacgcgccgcgccaagatggcatcagaagcttctggaactgggaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

10.04

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 415, 420
AciI CCGC 3 cut(s) 352, 359, 418
AclWI GGATC 1 cut(s) 107
AfaI GTAC 3 cut(s) 46, 264, 324
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 4 cut(s) 110, 127, 188, 194
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 204, 237, 440
AluI AGCT 3 cut(s) 204, 237, 440
AlwI GGATC 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 417, 422
AspS9I GGNCC 2 cut(s) 140, 169
AsuHPI GGTGA 3 cut(s) 16, 221, 320
AvaII GGWCC 2 cut(s) 140, 169
BccI CCATC 2 cut(s) 53, 421
BciT130I CCWGG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 364
BglI GCCNNNNNGGC 2 cut(s) 360, 428
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 2 cut(s) 140, 169
BmgT120I GGNCC 2 cut(s) 140, 169
BmiI GGNNCC 2 cut(s) 171, 302
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 70, 440
BmuI ACTGGG 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 205
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 99, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 99, 304
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 415, 420
BshVI ATCGAT 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 358
Bsp143I GATC 2 cut(s) 112, 391
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 3 cut(s) 352, 359, 418
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 2 cut(s) 415, 420
BspLI GGNNCC 2 cut(s) 171, 302
BspPI GGATC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 99, 304
BssMI GATC 2 cut(s) 112, 391
BssT1I CCWWGG 2 cut(s) 99, 304
Bst2UI CCWGG 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 48, 174, 205
BstDSI CCRYGG 1 cut(s) 99
BstFNI CGCG 2 cut(s) 415, 420
BstHHI GCGC 2 cut(s) 417, 422
BstKTI GATC 2 cut(s) 115, 394
BstMBI GATC 2 cut(s) 112, 391
BstMWI GCNNNNNNNGC 4 cut(s) 360, 402, 428, 437
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 2 cut(s) 415, 420
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 2 cut(s) 417, 422
Cfr13I GGNCC 2 cut(s) 140, 169
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 2 cut(s) 364, 411
Csp6I GTAC 3 cut(s) 45, 263, 323
CviAII CATG 2 cut(s) 100, 272
CviJI RGCY 6 cut(s) 204, 237, 255, 363, 369, 440
CviKI_1 RGCY 6 cut(s) 204, 237, 255, 363, 369, 440
CviQI GTAC 3 cut(s) 45, 263, 323
DdeI CTNAG 3 cut(s) 48, 174, 205
DpnI GATC 2 cut(s) 114, 393
DpnII GATC 2 cut(s) 112, 391
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 99, 304
Eco47I GGWCC 2 cut(s) 140, 169
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 99, 304
ErhI CCWWGG 2 cut(s) 99, 304
FaeI CATG 2 cut(s) 103, 275
FaiI YATR 6 cut(s) 101, 167, 217, 219, 273, 331
FatI CATG 2 cut(s) 99, 271
FauI CCCGC 1 cut(s) 352
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 418
Fsp4HI GCNGC 1 cut(s) 418
GlaI GCGC 2 cut(s) 416, 421
GluI GCNGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 372
HgaI GACGC 2 cut(s) 364, 411
HhaI GCGC 2 cut(s) 417, 422
Hin1II CATG 2 cut(s) 103, 275
Hin6I GCGC 2 cut(s) 415, 420
HinP1I GCGC 2 cut(s) 415, 420
HindIII AAGCTT 2 cut(s) 235, 438
HinfI GANTC 3 cut(s) 94, 178, 184
HphI GGTGA 3 cut(s) 16, 221, 320
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 4 cut(s) 183, 345, 380, 436
Hpy188III TCNNGA 2 cut(s) 389, 444
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 402, 428, 437
HpyF3I CTNAG 3 cut(s) 48, 174, 205
Hsp92II CATG 2 cut(s) 103, 275
HspAI GCGC 2 cut(s) 415, 420
Kzo9I GATC 2 cut(s) 112, 391
LpnPI CCDG 6 cut(s) 186, 341, 368, 402, 429, 435
LweI GCATC 2 cut(s) 70, 440
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 114, 393
MboI GATC 2 cut(s) 112, 391
MboII GAAGA 5 cut(s) 122, 132, 145, 166, 347
MflI RGATCY 1 cut(s) 112
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 2 cut(s) 161, 167
MnlI CCTC 6 cut(s) 30, 131, 267, 291, 396, 418
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 2 cut(s) 198, 318
MspR9I CCNGG 1 cut(s) 356
MteI GCGCNGCGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 2 cut(s) 415, 420
MwoI GCNNNNNNNGC 4 cut(s) 360, 402, 428, 437
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 217
NdeII GATC 2 cut(s) 112, 391
NlaIII CATG 2 cut(s) 103, 275
NlaIV GGNNCC 2 cut(s) 171, 302
NspI RCATGY 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 94, 184
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 171, 302
PspPI GGNCC 2 cut(s) 140, 169
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 3 cut(s) 46, 264, 324
RsaNI GTAC 3 cut(s) 45, 263, 323
SaqAI TTAA 2 cut(s) 198, 318
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 112, 391
Sau96I GGNCC 2 cut(s) 140, 169
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 356
SfaNI GCATC 2 cut(s) 70, 440
SfcI CTRYAG 1 cut(s) 364
SinI GGWCC 2 cut(s) 140, 169
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 352, 359, 418
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 2 cut(s) 99, 304
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 2 cut(s) 94, 184
Tru1I TTAA 2 cut(s) 198, 318
Tru9I TTAA 2 cut(s) 198, 318
TspDTI ATGAA 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 140, 169
XceI RCATGY 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.