Rorug06G0133600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000089
Physical Location & Seq
Reverse (-)
18907633 .. 18921980
14348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0133600.1

Sequence Viewer

Length: 2223 bp
ATGGACGATCTTGATTTTGAGCCTACTGGACATGTTCGTATTGCTGGCAGATTTCAGCCCAAGGCGAAGCCCAAGTCTACGAAAGTAGCATCTAGTGCAGCTGCTTCTAATTTCCCAAATGTCGTAACTGAAAATTCAATCCGAGTATCTAGCACTGTCTCAGATAGTGTTCCATCTGCTACATCTGTTGATGTTGGAGAGGTTAAACTAACTTATCCAGTTGGTTCGTCCTCAGCGACCTCAGAGATCTTAGGAAGCCTAGAGCCATCAGGAAAGAATGAGCACTCAAGTGTCCCGTCCTTTGATGTTGACAGAACTACCGAGCCTTCCGAATCAGCTGCAGCAGATAGTATGCAACCATCAGCTATGGTTGCGGCTTCTAATGGAAGTGACGGTTCACATTCTGTCTATGGAAAATCAGCCAGCGAGAATGCAGACATATTCTCAGGATTGGAATGTCTTGACGATTATCCTACCCAAACTACAAGTGGTATAGTGCCTGCTTCCAGAAAGTCCCCTGAAAAGGCCAATGAGGGAAACTGTGGTGATCTGACACATTGTACTGTTGAGTCTTCAGAATTCTTAGCATGTGATGTTGAAGAAGCTCAAACTGTTTCTGATTATTGTGCAACCCAAGATCCAGTATCCTGCACAGAAGCTGCTATATCCAACGAACATGGTGATATCCGGTTAGAAACAAAGGAGTTTGAAGCTTTAGATGTTGTGTCTGAGGCTCCCATTTCAACTGGACGCCATGCTGGAAAATTTCAACCCAAGCTTAGAGTGAAGAAAGGAAAAGAGAATCCAAACATCCCTCACTCTGAAGTTGAGTCCACCACACTTGCAGCTTGTGAAAATTTCGAAACGGGTGAAATGGATGAGAGCTCACTTTGTACCATTCCGCCAGGAGATGTTCATGATCACATATCTCCCACTTTTGGTGATTCTATAGCCCCAAATCCAACCCCCAATTTCCAAGCAAATGCAGAAAGCCTTGCAGAAACTACTCAGTTAGATGAGGCTGTTTTTGGGGATGCTGCCCATTCAGAGGGTGTTTGTAGGAGGGGTCATAAGAGTGGAAATGGAAAAGAGTCTACAGCATCAAATCGTCCTCAGAAGCGCAAAGGTTCAGCAGCTGATGAGGAGGCTAAAGATGGGACATCATCCCGGAAGTCAAGGAAGCAGTTACCCCGTCAACAAGTTGATGAGGCAGGGAACAATACTAATGAGGACAGCTTCATTGCTGAAAATTCTAATGATTTTGATGGCAATGAAGATAAGGAGCATAATACAGAACGGAGAAAAAGAGCCCCAAGAAAGTCCAAGATACCTGCATCTGAAAATGAAAAACCAGTTCAAAAGCGCAAAAGGACCAAGAAAGCACCTGATGAACCAACCGAAGAACTGACCAAAAAGAAGTTCTCCCATTCAACTTGTAGAAATAGAAGACATGTGGACAAGTCTTTGCTCGAAATCCCTGAGGATGACATTGATCCTCAAAAAGTGCCTATGAAGGATCTTATTCGGCTAAGAGAGTATAGGGAGCGCTTGGCGATTAAAGAGGCAGCCAAGTTGAAAACTCCAGCGTCCAATCAAAGTGCTTATGACGAGTTTCATAAGGAAGCTTCTCATAATGAAGAGGAGAACTTTGGTTTCGAACAGGACAGAAGCTCTGGTGAAGATCAAGCAGGTTACAGGGATAGGGTTAGCACAAGTTCCTCTAGCTTCAATTACCAGTCCTTTATGAACAAAGAACGCCCTTCAAAATGGTTTGAACAAGACACGGAACTTTTCTATGAGGGTATTGAGCAGTTCGGATCCGATTTTGGTATGATCGCACAACTTTTTCCTGGTCGAACACGTAATCAAATCAAGTTGAAGTTCAAGAAGGAAGATCGTCAAAATCCAATACGTATGAATGAAGCCTTTCGCCGTCATTCCAGAGACAATTCCAAATATGTTTTGGTGATTAATGAGCTGCAAAAAGTTGCTCGGGAAAAGCAGGAGTCTAATGCAGATGAGTCGAATGACCAGGAGGAGGTAGAGCTGACTCATGATAACGATGGGGGAGTGACAAAACCTGAGTGGGATAAAATTGAAGATATGGAAACCGATGTTGCTGCCGAAGTTCAGCAGGAGGAAGCTGCTGTTGTTCATAGTCCCATGAAGTCTGATCAAATTGATGGTGGTGACGGTTTCAGCGGTTGGGATGATGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

740

Amino Acids

81.63

Weight (kDa)

4.93

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_7 PF15963 580 - 662 2.5e-25 Myb DNA-binding like
Myb_DNA-binding PF00249 589 - 630 1.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1339, 1679
AccI GTMKAC 2 cut(s) 77, 1094
AciI CCGC 3 cut(s) 374, 902, 2202
AclWI GGATC 5 cut(s) 632, 1487, 1524, 1812, 1825
AcsI RAATTY 5 cut(s) 133, 578, 764, 856, 1249
AcuI CTGAAG 2 cut(s) 558, 843
AcyI GRCGYC 1 cut(s) 751
AfaI GTAC 2 cut(s) 562, 895
AfeI AGCGCT 1 cut(s) 1547
AfiI CCNNNNNNNGG 4 cut(s) 523, 938, 1048, 2038
AflIII ACRYGT 3 cut(s) 31, 1450, 1859
AjnI CCWGG 3 cut(s) 904, 1849, 2031
AjuI GAANNNNNNNTTGG 2 cut(s) 1403, 1435
AleI CACNNNNGTG 1 cut(s) 288
Alw21I GWGCWC 2 cut(s) 285, 887
Alw26I GTCTC 2 cut(s) 163, 1938
AlwI GGATC 5 cut(s) 632, 1487, 1524, 1812, 1825
AlwNI CAGNNNCTG 2 cut(s) 659, 1136
Ama87I CYCGRG 1 cut(s) 1992
Aor51HI AGCGCT 1 cut(s) 1547
AoxI GGCC 1 cut(s) 525
ApoI RAATTY 5 cut(s) 133, 578, 764, 856, 1249
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AseI ATTAAT 1 cut(s) 1971
Asp700I GAANNNNTTC 1 cut(s) 1926
AspLEI GCGC 3 cut(s) 1122, 1365, 1548
AspS9I GGNCC 1 cut(s) 1371
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 7 cut(s) 557, 692, 881, 953, 1688, 1978, 2201
AsuII TTCGAA 2 cut(s) 861, 1656
AvaI CYCGRG 1 cut(s) 1992
AvaII GGWCC 1 cut(s) 1371
AxyI CCTNAGG 1 cut(s) 1479
BamHI GGATCC 1 cut(s) 1817
BanII GRGCYC 2 cut(s) 887, 1312
BbsI GAAGAC 2 cut(s) 564, 1453
Bbv12I GWGCWC 2 cut(s) 285, 887
BbvCI CCTCAGC 1 cut(s) 232
BccI CCATC 7 cut(s) 181, 274, 367, 1148, 1259, 2057, 2177
BceAI ACGGC 1 cut(s) 1917
BcgI CGANNNNNNTGC 6 cut(s) 320, 354, 2004, 2038, 2102, 2136
BciT130I CCWGG 3 cut(s) 906, 1851, 2033
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 2 cut(s) 919, 2173
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 2 cut(s) 163, 1938
BfaI CTAG 4 cut(s) 93, 150, 260, 1722
BfmI CTRYAG 3 cut(s) 339, 948, 1095
BfoI RGCGCY 1 cut(s) 1549
BfuAI ACCTGC 2 cut(s) 1339, 1679
BfuI GTATCC 1 cut(s) 655
BglII AGATCT 1 cut(s) 246
Bme1390I CCNGG 4 cut(s) 906, 1168, 1851, 2033
Bme18I GGWCC 1 cut(s) 1371
BmeT110I CYCGRG 1 cut(s) 1992
BmgT120I GGNCC 1 cut(s) 1371
BmiI GGNNCC 2 cut(s) 735, 1819
BmrFI CCNGG 4 cut(s) 906, 1168, 1851, 2033
BmsI GCATC 4 cut(s) 98, 1024, 1109, 1343
BpiI GAAGAC 2 cut(s) 564, 1453
BpmI CTGGAG 1 cut(s) 1566
Bpu10I CCTNAGC 1 cut(s) 232
Bpu14I TTCGAA 2 cut(s) 861, 1656
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 1168
BsaAI YACGTR 2 cut(s) 1862, 1913
BsaHI GRCGYC 1 cut(s) 751
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 687
Bsc4I CCNNNNNNNGG 4 cut(s) 523, 938, 1048, 2038
Bse1I ACTGG 6 cut(s) 31, 218, 641, 751, 1352, 1735
Bse21I CCTNAGG 1 cut(s) 1479
Bse3DI GCAATG 2 cut(s) 1239, 1276
BseBI CCWGG 3 cut(s) 906, 1851, 2033
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 6 cut(s) 810, 883, 1039, 1163, 1489, 2215
BseLI CCNNNNNNNGG 4 cut(s) 523, 938, 1048, 2038
BseMI GCAATG 2 cut(s) 1239, 1276
BseMII CTCAG 9 cut(s) 174, 246, 255, 459, 720, 1022, 1127, 1470, 2073
BseNI ACTGG 6 cut(s) 31, 218, 641, 751, 1352, 1735
BseRI GAGGAG 3 cut(s) 1157, 1655, 2051
BsgI GTGCAG 2 cut(s) 117, 634
BshFI GGCC 1 cut(s) 527
BsiHKAI GWGCWC 2 cut(s) 285, 887
BsiHKCI CYCGRG 1 cut(s) 1992
BsiSI CCGG 2 cut(s) 688, 1168
BslFI GGGAC 4 cut(s) 278, 499, 1171, 2145
BslI CCNNNNNNNGG 4 cut(s) 523, 938, 1048, 2038
BsmAI GTCTC 2 cut(s) 163, 1938
BsmFI GGGAC 4 cut(s) 278, 499, 1171, 2145
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 1992
Bsp119I TTCGAA 2 cut(s) 861, 1656
Bsp1286I GDGCHC 3 cut(s) 285, 887, 1312
BspACI CCGC 3 cut(s) 374, 902, 2202
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 9 cut(s) 173, 245, 254, 458, 721, 1021, 1126, 1471, 2074
BspHI TCATGA 2 cut(s) 916, 2053
BspLI GGNNCC 2 cut(s) 735, 1819
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 2 cut(s) 1339, 1679
BspPI GGATC 5 cut(s) 632, 1487, 1524, 1812, 1825
BspT104I TTCGAA 2 cut(s) 861, 1656
BsrDI GCAATG 2 cut(s) 1239, 1276
BsrI ACTGG 6 cut(s) 31, 218, 641, 751, 1352, 1735
BssECI CCNNGG 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 751
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 3 cut(s) 906, 1851, 2033
Bst4CI ACNGT 6 cut(s) 157, 395, 542, 565, 613, 2195
Bst6I CTCTTC 1 cut(s) 1632
BstACI GRCGYC 1 cut(s) 751
BstAPI GCANNNNNTGC 1 cut(s) 95
BstBAI YACGTR 2 cut(s) 1862, 1913
BstBI TTCGAA 2 cut(s) 861, 1656
BstC8I GCNNGC 3 cut(s) 46, 424, 501
BstF5I GGATG 6 cut(s) 810, 883, 1039, 1163, 1489, 2215
BstH2I RGCGCY 1 cut(s) 1549
BstHHI GCGC 3 cut(s) 1122, 1365, 1548
BstMAI GTCTC 2 cut(s) 163, 1938
BstMWI GCNNNNNNNGC 2 cut(s) 95, 371
BstNI CCWGG 3 cut(s) 906, 1851, 2033
BstNSI RCATGY 3 cut(s) 35, 591, 1454
BstSCI CCNGG 4 cut(s) 904, 1166, 1849, 2031
BstSFI CTRYAG 3 cut(s) 339, 948, 1095
BstSNI TACGTA 1 cut(s) 1913
BstV2I GAAGAC 2 cut(s) 564, 1453
BstX2I RGATCY 4 cut(s) 246, 637, 1516, 1817
BstYI RGATCY 4 cut(s) 246, 637, 1516, 1817
Bsu36I CCTNAGG 1 cut(s) 1479
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 6 cut(s) 810, 883, 1039, 1163, 1489, 2215
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 2 cut(s) 1339, 1679
Cac8I GCNNGC 3 cut(s) 46, 424, 501
CaiI CAGNNNCTG 2 cut(s) 659, 1136
CciI TCATGA 2 cut(s) 916, 2053
CfoI GCGC 3 cut(s) 1122, 1365, 1548
Cfr13I GGNCC 1 cut(s) 1371
CseI GACGC 2 cut(s) 759, 1575
Csp6I GTAC 2 cut(s) 561, 894
CspCI CAANNNNNGTGG 2 cut(s) 823, 858
CviAII CATG 8 cut(s) 32, 588, 677, 755, 917, 1451, 2054, 2164
CviQI GTAC 2 cut(s) 561, 894
Eam1104I CTCTTC 1 cut(s) 1632
EarI CTCTTC 1 cut(s) 1632
EciI GGCGGA 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 885
Eco105I TACGTA 1 cut(s) 1913
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 887, 1312
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 1371
Eco47III AGCGCT 1 cut(s) 1547
Eco53kI GAGCTC 1 cut(s) 885
Eco57I CTGAAG 2 cut(s) 558, 843
Eco81I CCTNAGG 1 cut(s) 1479
Eco88I CYCGRG 1 cut(s) 1992
EcoICRI GAGCTC 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 3 cut(s) 904, 1849, 2031
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 887, 1312
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 8 cut(s) 35, 591, 680, 758, 920, 1454, 2057, 2167
FaqI GGGAC 4 cut(s) 278, 499, 1171, 2145
FatI CATG 8 cut(s) 31, 587, 676, 754, 916, 1450, 2053, 2163
FbaI TGATCA 2 cut(s) 919, 2173
FblI GTMKAC 2 cut(s) 77, 1094
FokI GGATG 5 cut(s) 797, 890, 1046, 1150, 1496
FriOI GRGCYC 2 cut(s) 887, 1312
FspBI CTAG 4 cut(s) 93, 150, 260, 1722
GlaI GCGC 3 cut(s) 1121, 1364, 1547
GsuI CTGGAG 1 cut(s) 1566
HaeII RGCGCY 1 cut(s) 1549
HaeIII GGCC 1 cut(s) 527
HapII CCGG 2 cut(s) 688, 1168
HgaI GACGC 2 cut(s) 759, 1575
HhaI GCGC 3 cut(s) 1122, 1365, 1548
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 8 cut(s) 35, 591, 680, 758, 920, 1454, 2057, 2167
Hin6I GCGC 3 cut(s) 1120, 1363, 1546
HinP1I GCGC 3 cut(s) 1120, 1363, 1546
HincII GTYRAC 2 cut(s) 310, 1196
HindII GTYRAC 2 cut(s) 310, 1196
HindIII AAGCTT 3 cut(s) 711, 776, 1623
HinfI GANTC 9 cut(s) 332, 569, 802, 830, 944, 1091, 2006, 2021, 2050
HpaII CCGG 2 cut(s) 688, 1168
HphI GGTGA 7 cut(s) 557, 692, 881, 953, 1688, 1978, 2201
Hpy166II GTNNAC 7 cut(s) 78, 310, 398, 834, 1095, 1196, 1456
Hpy8I GTNNAC 7 cut(s) 78, 310, 398, 834, 1095, 1196, 1456
HpyAV CCTTC 4 cut(s) 336, 1507, 1770, 1882
HpyCH4III ACNGT 6 cut(s) 157, 395, 542, 565, 613, 2195
HpyCH4IV ACGT 2 cut(s) 1861, 1912
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 371
HpySE526I ACGT 2 cut(s) 1861, 1912
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 8 cut(s) 35, 591, 680, 758, 920, 1454, 2057, 2167
HspAI GCGC 3 cut(s) 1120, 1363, 1546
Ksp22I TGATCA 2 cut(s) 919, 2173
LmnI GCTCC 3 cut(s) 739, 1282, 1543
LweI GCATC 4 cut(s) 98, 1024, 1109, 1343
MaeI CTAG 4 cut(s) 93, 150, 260, 1722
MaeII ACGT 2 cut(s) 1861, 1912
MaeIII GTNAC 6 cut(s) 124, 389, 1185, 1691, 2071, 2189
MflI RGATCY 4 cut(s) 246, 637, 1516, 1817
MhlI GDGCHC 3 cut(s) 285, 887, 1312
MlyI GAGTC 6 cut(s) 578, 839, 1100, 2015, 2030, 2044
MmeI TCCRAC 3 cut(s) 175, 693, 986
MroXI GAANNNNTTC 1 cut(s) 1926
MseI TTAA 3 cut(s) 204, 1557, 1971
MslI CAYNNNNRTG 2 cut(s) 288, 1074
MspA1I CMGCKG 4 cut(s) 101, 338, 1136, 2202
MspI CCGG 2 cut(s) 688, 1168
MspR9I CCNGG 4 cut(s) 906, 1168, 1851, 2033
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 3 cut(s) 906, 1851, 2033
MwoI GCNNNNNNNGC 2 cut(s) 95, 371
NciI CCSGG 1 cut(s) 1168
NlaIII CATG 8 cut(s) 35, 591, 680, 758, 920, 1454, 2057, 2167
NlaIV GGNNCC 2 cut(s) 735, 1819
NmuCI GTSAC 3 cut(s) 389, 2071, 2189
NspI RCATGY 3 cut(s) 35, 591, 1454
NspV TTCGAA 2 cut(s) 861, 1656
OliI CACNNNNGTG 1 cut(s) 288
PagI TCATGA 2 cut(s) 916, 2053
PciI ACATGT 2 cut(s) 31, 1450
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 1926
PfeI GAWTC 3 cut(s) 332, 802, 944
PfoI TCCNGGA 1 cut(s) 1166
PleI GAGTC 6 cut(s) 577, 838, 1099, 2014, 2029, 2044
PpsI GAGTC 6 cut(s) 577, 838, 1099, 2014, 2029, 2044
Ppu21I YACGTR 2 cut(s) 1862, 1913
PscI ACATGT 2 cut(s) 31, 1450
PshBI ATTAAT 1 cut(s) 1971
Psp124BI GAGCTC 1 cut(s) 887
Psp6I CCWGG 3 cut(s) 904, 1849, 2031
PspGI CCWGG 3 cut(s) 904, 1849, 2031
PspN4I GGNNCC 2 cut(s) 735, 1819
PspPI GGNCC 1 cut(s) 1371
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 2 cut(s) 659, 1136
PsuI RGATCY 4 cut(s) 246, 637, 1516, 1817
PvuII CAGCTG 3 cut(s) 101, 338, 1136
RsaI GTAC 2 cut(s) 562, 895
RsaNI GTAC 2 cut(s) 561, 894
RseI CAYNNNNRTG 2 cut(s) 288, 1074
SacI GAGCTC 1 cut(s) 887
SaqAI TTAA 3 cut(s) 204, 1557, 1971
Sau96I GGNCC 1 cut(s) 1371
SchI GAGTC 6 cut(s) 578, 839, 1100, 2015, 2030, 2044
ScrFI CCNGG 4 cut(s) 906, 1168, 1851, 2033
SduI GDGCHC 3 cut(s) 285, 887, 1312
SfaNI GCATC 4 cut(s) 98, 1024, 1109, 1343
SfcI CTRYAG 3 cut(s) 339, 948, 1095
SfuI TTCGAA 2 cut(s) 861, 1656
SinI GGWCC 1 cut(s) 1371
SmiMI CAYNNNNRTG 2 cut(s) 288, 1074
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SnaBI TACGTA 1 cut(s) 1913
SsiI CCGC 3 cut(s) 374, 902, 2202
SspMI CTAG 4 cut(s) 93, 150, 260, 1722
SstI GAGCTC 1 cut(s) 887
StyD4I CCNGG 4 cut(s) 904, 1166, 1849, 2031
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 6 cut(s) 157, 395, 542, 565, 613, 2195
TaiI ACGT 2 cut(s) 1864, 1915
TaqI TCGA 5 cut(s) 861, 1470, 1656, 1855, 2024
TatI WGTACW 1 cut(s) 560
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 3 cut(s) 332, 802, 944
Tru1I TTAA 3 cut(s) 204, 1557, 1971
Tru9I TTAA 3 cut(s) 204, 1557, 1971
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 3 cut(s) 389, 2071, 2189
Tsp45I GTSAC 3 cut(s) 389, 2071, 2189
TspGWI ACGGA 2 cut(s) 1312, 1799
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 1371
VspI ATTAAT 1 cut(s) 1971
XapI RAATTY 5 cut(s) 133, 578, 764, 856, 1249
XceI RCATGY 3 cut(s) 35, 591, 1454
XcmI CCANNNNNNNNNTGG 2 cut(s) 485, 1960
XmiI GTMKAC 2 cut(s) 77, 1094
XmnI GAANNNNTTC 1 cut(s) 1926
XspI CTAG 4 cut(s) 93, 150, 260, 1722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.