Rorug07G0260800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000089
Physical Location & Seq
Reverse (-)
24501935 .. 24506081
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0260800.1

Sequence Viewer

Length: 2769 bp
ATGGCAGAGAGTTCAGTTAATCTTCTGCTAGAGAAACTTGGAGGCATTTTCCAAAATGAGGTACACTTGTTGGGTGTATTGTTAGGAGGGGTTCAAGAAGAAGCGATCAATCTTCGAGGCGAGTTTGAAAGAATGAGGGCCTTCCTGAGGACTGCAGATGCATTGCAGGAAACCGATCAGGAAGTCAAAGTTTGGGTTAAGCAAGTCAGAGATATTGCTCATGAAGCTGAAGATATTCTAGATGAATTTACTTTGCTCCACGAACATGATCATGGGGATGGAATCTATGGTTCTCTCTGCAGATTGAGTTGCTGTATCAAGAATGCAAAAGCTTGTTATCGGATTGCTTGCCAGTTAAAAGCCATCAACTCAAGAGTCAAAAGTATTTCAGAGGTTCATAAGAGACTCCAACACAAATTCATCAAAGCCGAAGAAGGACTGGGATTTGACAGTGTTGGAAATACATGGCAAGACCGTCGAGGAGATGCGCTTCTTCTAGACAAATCTGATCTTGTGGGCATTCATGAGCCTAAAAATCAGCTTGTGGGGTGGCTGTTTAAAGACAATTCTGGGCGCAAAGTGGTTTCCTTGGCTGGAATGGGAGGAATAGGGAAGACCACCTTGGCCAAGCAAGTATATGATGATCCACAAGTGGAAAAGCATTTTGAAGTGCGTGCATGGGTCACTGTCAATCGATCCATCAAATCTGGAGACCTTCTCAAAGACATGGTTCAACAACTCTTCAAAGCAAGCAGGAGACGAGTTCCAGAAGTAATTGCAAACATGGACAACAATCAACTGAAGGCGACAATCAAGGAGCTGCTACAGGAAAGAAGGTATCTGATTGTCTTGGATGATGTCTGGCACCTATACGAATGGGATACTATTCAACATGCACTGCCTAACAACAGTTGTGGCAGCCGAGTTATGCTCACTACAAGAAATGCTGAAATAGCCTCTACTACTCGCACACTCTCTGATGGTAAGACCTTTGAATTGAAGCCTATACCTCCTACAGAGTCTTGGGATCTATTTTGCAGAAAGGTGTTTCAACTGAACAAATGCCCTCCTCATTTGGAGGATATTTGTAGAGACATTTTAAAAAAGTGTGAGGGGCTTCCCCTTGCGATTGTCACAATTAGTAGAGTTTTGGCTACAAAAGATGAGAGACGAATGTACGAGTGGGATATGGTTGCCCGCAGCCTTGGGGCAGAAATTGAGGGAAATGACAAGCTCAAGTATTTAAAAAAGGTTCTGTTACTCAGCTTTAATGACTTGCCATACTTCCTCAAATCCTGCTTCTTGTACCTGAGCATCTTTCCTGAGGGTCATCTGATTGCACGTACGAGGCTAATCCGATTATGGGTAGCAGAGGGATTAATTGAAGCAAAAGTGGGGAAAACACCAGAAGAAGTGGCAGATGACTATCTCCATGAACTCTTGAATAGAAGCCTAATGCAGGTGGCGACAACTACTTCTGATGGAAGGATCAGAACGTGTCGGATCCATGAGTTTTTGAGGGAGATCATCATCTCCAAGTCAAGAGATCAGAACTTCACCACTGTTGTGAAAGAGCAAAGTGTGCCTGCGCAATGGTCTGATAAAATCCGACGCCTATCCATCCAGAGCACACTACAAAGTGTGAAGCCAAACAGGTCAGTTTCCCAATTACGCTCACTGTTCATGTTTGGGGTCACTGAAAAGTCATCCATCCCTACATTGTTCCCTAGAGGTTTCAGGCTGCTAAATGTCCTGGACTTGCGTAGCTCACCCTTAAAGAAATTTCCAGTTGAAGTTGTGGACTTGTACTTCTTGAAATACTTGAGCTTGAGGAAAACCAAGGTGAAAACTGTGCCGAGATTCATTGGGAAGCTTCAGAATCTAGAAACTCTAGATCTTAAGCATTCCTATGTCATTGAACTCCCTGTTGAGATCCTGAAGCTCCAACGCCTACGCCATCTTCTGGTGTATCAATGTCAGTTTATATCCTATCAATATTTCAATTCAAGTATTGGTTTTAAGGTTGCACCAAAAATAGGAGGTTTGCGAGCATTGCAGAAGCTCTGTTTCATAGAGGTAAACCAAGATGGTGGCACTATAATAAGAGAACTTGGGAAGCTAAATCAGCTGAGAAGGTTAGGCCTTATAAAATTGAGAAAAGTGGATGGGAAGGCTCTATCTTCATCCATTGCAAAGCTGAGTAATCTTCGTGCGCTGTCTATAACTTCAGTGGAAGCAGATGAGATCATTGATCTTCAACACCTTTTTTCTTCTCCTTTGTTGCTTCAGCGGCTCTACATGACCGGACGTTTGGAAGCATTACCTCACTGGATTGCTTCTCTTCCAAACCTAGTCAGATTGTCTCTGAAATGGAGTAGGCTAAGGGATGATCCACTCATCTATCTACGACATATTCCCAATCTTGTTCAACTTGAACTATGTCAAGCATTTATCGGAGACAGATTGTGTTTAAAGGCTGATGGGTTTATGAAGCTGAAGATTCTAAGCCTGGACAAATTCGATGAACTTAGGTGCATAGATGTGGAGATGGGTGCAATGGATTGTCTTGAAAAGCTAAGCATCCAACGGTGTGAGCTTCTGGAGAATGTGCCATCAGGGATTGAGCGTCTACGTAAGTTGAAAGTTCTCGAGTTATCTGATATGCCAGTGGATTTGATGAAGACAATCCGTCCAGATGGAAAAGATAATTGGAGAGTCTCGCATGTCCCTGAAGTTTCTTCGACATACTGGAGAGAAGGGGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

922

Amino Acids

105.77

Weight (kDa)

9.09

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 91 8.1e-22 Rx N-terminal domain
NB-ARC PF00931 176 - 353 4.5e-45 NB-ARC domain
WHD_DRP PF23559 439 - 510 2.3e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 556 - 881 1.5e-43 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2147
AarI CACCTGC 1 cut(s) 1450
Acc16I TGCGCA 1 cut(s) 1590
Acc36I ACCTGC 1 cut(s) 1450
AccB1I GGYRCC 1 cut(s) 864
AccB7I CCANNNNNTGG 1 cut(s) 1963
AccI GTMKAC 1 cut(s) 2629
AciI CCGC 2 cut(s) 1198, 2290
AclWI GGATC 8 cut(s) 638, 690, 1035, 1496, 1498, 1511, 1927, 2384
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 4 cut(s) 245, 416, 1781, 2516
AcuI CTGAAG 8 cut(s) 249, 821, 1859, 1958, 2211, 2270, 2516, 2751
AcyI GRCGYC 1 cut(s) 1612
AfaI GTAC 5 cut(s) 63, 1178, 1307, 1345, 1808
AfiI CCNNNNNNNGG 6 cut(s) 58, 147, 1363, 1459, 1963, 2036
AflII CTTAAG 1 cut(s) 1898
AflIII ACRYGT 1 cut(s) 1496
AhdI GACNNNNNGTC 1 cut(s) 2688
AjnI CCWGG 2 cut(s) 1752, 2508
AjuI GAANNNNNNNTTGG 4 cut(s) 605, 637, 2692, 2724
AleI CACNNNNGTG 1 cut(s) 1565
Alw21I GWGCWC 1 cut(s) 1631
Alw26I GTCTC 8 cut(s) 397, 705, 751, 1086, 1162, 2367, 2451, 2722
AlwI GGATC 8 cut(s) 638, 690, 1035, 1496, 1498, 1511, 1927, 2384
Ama87I CYCGRG 1 cut(s) 2648
AoxI GGCC 3 cut(s) 138, 624, 2140
ApeKI GCWGC 4 cut(s) 820, 918, 1200, 1741
ApoI RAATTY 4 cut(s) 245, 416, 1781, 2516
ArsI GACNNNNNNTTYG 2 cut(s) 2293, 2325
AseI ATTAAT 1 cut(s) 1379
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 4 cut(s) 490, 576, 1591, 2215
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 1549, 1761, 1855
AvaI CYCGRG 1 cut(s) 2648
AxyI CCTNAGG 2 cut(s) 146, 1323
BaeI ACNNNNGTAYC 2 cut(s) 53, 86
BalI TGGCCA 1 cut(s) 626
BamHI GGATCC 1 cut(s) 1503
BanI GGYRCC 1 cut(s) 864
BbsI GAAGAC 2 cut(s) 620, 2687
Bbv12I GWGCWC 1 cut(s) 1631
BbvI GCAGC 4 cut(s) 807, 930, 1212, 1728
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 1754, 2510
BciVI GTATCC 1 cut(s) 874
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 8 cut(s) 397, 705, 751, 1086, 1162, 2367, 2451, 2722
BfaI CTAG 7 cut(s) 29, 239, 497, 1728, 1883, 1892, 2351
BfmI CTRYAG 4 cut(s) 153, 298, 824, 1014
BfrI CTTAAG 1 cut(s) 1898
BfuAI ACCTGC 1 cut(s) 1450
BfuI GTATCC 1 cut(s) 874
BglII AGATCT 1 cut(s) 1894
BisI GCNGC 5 cut(s) 821, 919, 1201, 1742, 2291
BlpI GCTNAGC 1 cut(s) 2576
BlsI GCNGC 5 cut(s) 822, 920, 1202, 1743, 2292
Bme1390I CCNGG 2 cut(s) 1754, 2510
BmeRI GACNNNNNGTC 1 cut(s) 2688
BmeT110I CYCGRG 1 cut(s) 2648
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 866, 1505
BmrFI CCNGG 2 cut(s) 1754, 2510
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 4 cut(s) 148, 475, 1323, 2589
BmuI ACTGGG 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 620, 2687
BplI GAGNNNNNCTC 4 cut(s) 702, 734, 915, 947
BpmI CTGGAG 2 cut(s) 729, 2621
Bpu10I CCTNAGC 2 cut(s) 1310, 2381
Bpu1102I GCTNAGC 1 cut(s) 2576
BpuEI CTTGAG 4 cut(s) 355, 1220, 1843, 1849
Bsa29I ATCGAT 1 cut(s) 694
BsaAI YACGTR 2 cut(s) 1343, 2633
BsaBI GATNNNNATC 2 cut(s) 1425, 1529
BsaHI GRCGYC 1 cut(s) 1612
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 4 cut(s) 588, 621, 1204, 1839
BsaWI WCCGGW 1 cut(s) 2303
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 147, 1363, 1459, 1963, 2036
Bse1I ACTGG 6 cut(s) 352, 444, 1787, 2333, 2666, 2753
Bse21I CCTNAGG 2 cut(s) 146, 1323
Bse3DI GCAATG 5 cut(s) 161, 1598, 2051, 2187, 2562
Bse8I GATNNNNATC 2 cut(s) 1425, 1529
BseBI CCWGG 2 cut(s) 1754, 2510
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 4 cut(s) 588, 621, 1204, 1839
BseGI GGATG 9 cut(s) 283, 859, 1620, 1706, 1710, 2170, 2183, 2392, 2580
BseJI GATNNNNATC 2 cut(s) 1425, 1529
BseLI CCNNNNNNNGG 6 cut(s) 58, 147, 1363, 1459, 1963, 2036
BseMI GCAATG 5 cut(s) 161, 1598, 2051, 2187, 2562
BseMII CTCAG 6 cut(s) 137, 1276, 1301, 1314, 2120, 2189
BseNI ACTGG 6 cut(s) 352, 444, 1787, 2333, 2666, 2753
BseRI GAGGAG 2 cut(s) 495, 1059
BseXI GCAGC 4 cut(s) 807, 930, 1212, 1728
BshFI GGCC 3 cut(s) 140, 626, 2142
BshNI GGYRCC 1 cut(s) 864
BshVI ATCGAT 1 cut(s) 694
BsiHKAI GWGCWC 1 cut(s) 1631
BsiHKCI CYCGRG 1 cut(s) 2648
BsiSI CCGG 1 cut(s) 2304
BsiWI CGTACG 1 cut(s) 1343
BslFI GGGAC 1 cut(s) 2711
BslI CCNNNNNNNGG 6 cut(s) 58, 147, 1363, 1459, 1963, 2036
BsmAI GTCTC 8 cut(s) 397, 705, 751, 1086, 1162, 2367, 2451, 2722
BsmBI CGTCTC 2 cut(s) 751, 1162
BsmFI GGGAC 1 cut(s) 2711
BsmI GAATGC 3 cut(s) 328, 519, 1903
BsnI GGCC 3 cut(s) 140, 626, 2142
Bso31I GGTCTC 1 cut(s) 705
BsoBI CYCGRG 1 cut(s) 2648
Bsp1286I GDGCHC 1 cut(s) 1631
Bsp1720I GCTNAGC 1 cut(s) 2576
BspACI CCGC 2 cut(s) 1198, 2290
BspANI GGCC 3 cut(s) 140, 626, 2142
BspCNI CTCAG 6 cut(s) 138, 1275, 1302, 1315, 2121, 2190
BspDI ATCGAT 1 cut(s) 694
BspHI TCATGA 2 cut(s) 220, 523
BspLI GGNNCC 2 cut(s) 866, 1505
BspMAI CTGCAG 2 cut(s) 157, 302
BspMI ACCTGC 1 cut(s) 1450
BspPI GGATC 8 cut(s) 638, 690, 1035, 1496, 1498, 1511, 1927, 2384
BspT107I GGYRCC 1 cut(s) 864
BspTI CTTAAG 1 cut(s) 1898
BspTNI GGTCTC 1 cut(s) 705
BsrDI GCAATG 5 cut(s) 161, 1598, 2051, 2187, 2562
BsrI ACTGG 6 cut(s) 352, 444, 1787, 2333, 2666, 2753
BssECI CCNNGG 4 cut(s) 588, 621, 1204, 1839
BssNI GRCGYC 1 cut(s) 1612
BssT1I CCWWGG 4 cut(s) 588, 621, 1204, 1839
Bst2UI CCWGG 2 cut(s) 1754, 2510
Bst4CI ACNGT 8 cut(s) 452, 476, 688, 911, 1564, 1680, 1852, 2589
Bst6I CTCTTC 2 cut(s) 746, 2346
BstACI GRCGYC 1 cut(s) 1612
BstAFI CTTAAG 1 cut(s) 1898
BstAPI GCANNNNNTGC 1 cut(s) 1582
BstBAI YACGTR 2 cut(s) 1343, 2633
BstC8I GCNNGC 6 cut(s) 349, 675, 751, 1198, 1587, 2049
BstENI CCTNNNNNAGG 2 cut(s) 145, 1457
BstF5I GGATG 9 cut(s) 283, 859, 1620, 1706, 1710, 2170, 2183, 2392, 2580
BstHHI GCGC 4 cut(s) 490, 576, 1591, 2215
BstMAI GTCTC 8 cut(s) 397, 705, 751, 1086, 1162, 2367, 2451, 2722
BstMWI GCNNNNNNNGC 6 cut(s) 224, 953, 1582, 2053, 2125, 2290
BstNI CCWGG 2 cut(s) 1754, 2510
BstNSI RCATGY 2 cut(s) 896, 2726
BstSCI CCNGG 2 cut(s) 1752, 2508
BstSFI CTRYAG 4 cut(s) 153, 298, 824, 1014
BstSNI TACGTA 1 cut(s) 2633
BstV1I GCAGC 4 cut(s) 807, 930, 1212, 1728
BstV2I GAAGAC 2 cut(s) 620, 2687
BstX2I RGATCY 4 cut(s) 1027, 1503, 1894, 1932
BstXI CCANNNNNNTGG 1 cut(s) 2090
BstYI RGATCY 4 cut(s) 1027, 1503, 1894, 1932
Bsu15I ATCGAT 1 cut(s) 694
Bsu36I CCTNAGG 2 cut(s) 146, 1323
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 140, 626, 2142
BsuTUI ATCGAT 1 cut(s) 694
BtsCI GGATG 9 cut(s) 283, 859, 1620, 1706, 1710, 2170, 2183, 2392, 2580
BtsI GCAGTG 1 cut(s) 896
BtsIMutI CAGTG 9 cut(s) 457, 684, 896, 1560, 1676, 1695, 2235, 2326, 2673
BveI ACCTGC 1 cut(s) 1450
Cac8I GCNNGC 6 cut(s) 349, 675, 751, 1198, 1587, 2049
CciI TCATGA 2 cut(s) 220, 523
CfoI GCGC 4 cut(s) 490, 576, 1591, 2215
Cfr13I GGNCC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 694
CseI GACGC 2 cut(s) 1620, 2615
Csp6I GTAC 5 cut(s) 62, 1177, 1306, 1344, 1807
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviQI GTAC 5 cut(s) 62, 1177, 1306, 1344, 1807
DraI TTTAAA 4 cut(s) 559, 1101, 1245, 2472
DriI GACNNNNNGTC 1 cut(s) 2688
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 746, 2346
Eam1105I GACNNNNNGTC 1 cut(s) 2688
EarI CTCTTC 2 cut(s) 746, 2346
Eco105I TACGTA 1 cut(s) 2633
Eco130I CCWWGG 4 cut(s) 588, 621, 1204, 1839
Eco147I AGGCCT 1 cut(s) 2142
Eco31I GGTCTC 1 cut(s) 705
Eco57I CTGAAG 8 cut(s) 249, 821, 1859, 1958, 2211, 2270, 2516, 2751
Eco81I CCTNAGG 2 cut(s) 146, 1323
Eco88I CYCGRG 1 cut(s) 2648
EcoNI CCTNNNNNAGG 2 cut(s) 145, 1457
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 1752, 2508
EcoT14I CCWWGG 4 cut(s) 588, 621, 1204, 1839
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 4 cut(s) 588, 621, 1204, 1839
Esp3I CGTCTC 2 cut(s) 751, 1162
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 2711
FauI CCCGC 1 cut(s) 1205
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 2629
Fnu4HI GCNGC 5 cut(s) 821, 919, 1201, 1742, 2291
FokI GGATG 9 cut(s) 290, 866, 1607, 1693, 1697, 2170, 2177, 2399, 2567
Fsp4HI GCNGC 5 cut(s) 821, 919, 1201, 1742, 2291
FspBI CTAG 7 cut(s) 29, 239, 497, 1728, 1883, 1892, 2351
FspI TGCGCA 1 cut(s) 1590
GlaI GCGC 4 cut(s) 489, 575, 1590, 2214
GluI GCNGC 5 cut(s) 821, 919, 1201, 1742, 2291
GsuI CTGGAG 2 cut(s) 729, 2621
HaeIII GGCC 3 cut(s) 140, 626, 2142
HapII CCGG 1 cut(s) 2304
HgaI GACGC 2 cut(s) 1620, 2615
HhaI GCGC 4 cut(s) 490, 576, 1591, 2215
Hin1I GRCGYC 1 cut(s) 1612
Hin6I GCGC 4 cut(s) 488, 574, 1589, 2213
HinP1I GCGC 4 cut(s) 488, 574, 1589, 2213
HindIII AAGCTT 2 cut(s) 330, 1871
HinfI GANTC 8 cut(s) 282, 375, 405, 1019, 1860, 1879, 2500, 2715
HpaII CCGG 1 cut(s) 2304
HphI GGTGA 3 cut(s) 1549, 1761, 1855
Hpy166II GTNNAC 4 cut(s) 64, 1801, 2080, 2630
Hpy8I GTNNAC 4 cut(s) 64, 1801, 2080, 2630
Hpy99I CGWCG 2 cut(s) 480, 1614
HpyAV CCTTC 9 cut(s) 151, 428, 725, 796, 828, 1479, 2127, 2164, 2750
HpyCH4III ACNGT 8 cut(s) 452, 476, 688, 911, 1564, 1680, 1852, 2589
HpyCH4IV ACGT 4 cut(s) 1342, 1496, 2308, 2632
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 953, 1582, 2053, 2125, 2290
HpySE526I ACGT 4 cut(s) 1342, 1496, 2308, 2632
Hsp92I GRCGYC 1 cut(s) 1612
HspAI GCGC 4 cut(s) 488, 574, 1589, 2213
Ksp22I TGATCA 1 cut(s) 268
LmnI GCTCC 3 cut(s) 261, 817, 1947
Lsp1109I GCAGC 4 cut(s) 807, 930, 1212, 1728
LweI GCATC 4 cut(s) 148, 475, 1323, 2589
MaeI CTAG 7 cut(s) 29, 239, 497, 1728, 1883, 1892, 2351
MaeII ACGT 4 cut(s) 1342, 1496, 2308, 2632
MaeIII GTNAC 4 cut(s) 682, 1132, 1257, 1693
MflI RGATCY 4 cut(s) 1027, 1503, 1894, 1932
MhlI GDGCHC 1 cut(s) 1631
MlsI TGGCCA 1 cut(s) 626
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 4 cut(s) 384, 399, 1028, 2724
MmeI TCCRAC 6 cut(s) 433, 436, 1481, 1633, 1969, 2608
Mox20I TGGCCA 1 cut(s) 626
Mph1103I ATGCAT 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 626
MslI CAYNNNNRTG 6 cut(s) 264, 270, 276, 1565, 1908, 2540
Msp20I TGGCCA 1 cut(s) 626
MspA1I CMGCKG 2 cut(s) 2128, 2290
MspCI CTTAAG 1 cut(s) 1898
MspI CCGG 1 cut(s) 2304
MspR9I CCNGG 2 cut(s) 1754, 2510
Mva1269I GAATGC 3 cut(s) 328, 519, 1903
MvaI CCWGG 2 cut(s) 1754, 2510
MwoI GCNNNNNNNGC 6 cut(s) 224, 953, 1582, 2053, 2125, 2290
NlaIV GGNNCC 2 cut(s) 866, 1505
NmeAIII GCCGAG 2 cut(s) 947, 1881
NmuCI GTSAC 3 cut(s) 682, 1132, 1693
NsbI TGCGCA 1 cut(s) 1590
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 2 cut(s) 896, 2726
OliI CACNNNNGTG 1 cut(s) 1565
PaeR7I CTCGAG 1 cut(s) 2648
PagI TCATGA 2 cut(s) 220, 523
PaqCI CACCTGC 1 cut(s) 1450
PceI AGGCCT 1 cut(s) 2142
PctI GAATGC 3 cut(s) 328, 519, 1903
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 282, 1860, 1879, 2500
Pfl23II CGTACG 1 cut(s) 1343
PflMI CCANNNNNTGG 1 cut(s) 1963
PfoI TCCNGGA 1 cut(s) 1752
PkrI GCNGC 5 cut(s) 822, 920, 1202, 1743, 2292
PleI GAGTC 4 cut(s) 383, 399, 1027, 2723
PpsI GAGTC 4 cut(s) 383, 399, 1027, 2723
Ppu21I YACGTR 2 cut(s) 1343, 2633
PshBI ATTAAT 1 cut(s) 1379
PsiI TTATAA 1 cut(s) 2147
Psp6I CCWGG 2 cut(s) 1752, 2508
PspGI CCWGG 2 cut(s) 1752, 2508
PspLI CGTACG 1 cut(s) 1343
PspN4I GGNNCC 2 cut(s) 866, 1505
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 2 cut(s) 157, 302
PsuI RGATCY 4 cut(s) 1027, 1503, 1894, 1932
PvuII CAGCTG 1 cut(s) 2128
RsaI GTAC 5 cut(s) 63, 1178, 1307, 1345, 1808
RsaNI GTAC 5 cut(s) 62, 1177, 1306, 1344, 1807
RseI CAYNNNNRTG 6 cut(s) 264, 270, 276, 1565, 1908, 2540
SatI GCNGC 5 cut(s) 821, 919, 1201, 1742, 2291
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 4 cut(s) 384, 399, 1028, 2724
ScrFI CCNGG 2 cut(s) 1754, 2510
SduI GDGCHC 1 cut(s) 1631
SfaNI GCATC 4 cut(s) 148, 475, 1323, 2589
SfcI CTRYAG 4 cut(s) 153, 298, 824, 1014
Sfr274I CTCGAG 1 cut(s) 2648
SlaI CTCGAG 1 cut(s) 2648
SmiMI CAYNNNNRTG 6 cut(s) 264, 270, 276, 1565, 1908, 2540
SmlI CTYRAG 6 cut(s) 370, 1235, 1822, 1828, 1898, 2648
SmoI CTYRAG 6 cut(s) 370, 1235, 1822, 1828, 1898, 2648
SnaBI TACGTA 1 cut(s) 2633
SseBI AGGCCT 1 cut(s) 2142
SsiI CCGC 2 cut(s) 1198, 2290
SspI AATATT 1 cut(s) 1997
SspMI CTAG 7 cut(s) 29, 239, 497, 1728, 1883, 1892, 2351
StuI AGGCCT 1 cut(s) 2142
StyD4I CCNGG 2 cut(s) 1752, 2508
StyI CCWWGG 4 cut(s) 588, 621, 1204, 1839
TaaI ACNGT 8 cut(s) 452, 476, 688, 911, 1564, 1680, 1852, 2589
TaiI ACGT 4 cut(s) 1345, 1499, 2311, 2635
TaqI TCGA 6 cut(s) 115, 478, 694, 2520, 2649, 2741
TatI WGTACW 1 cut(s) 1806
TauI GCSGC 1 cut(s) 2293
TfiI GAWTC 4 cut(s) 282, 1860, 1879, 2500
TscAI CASTG 9 cut(s) 457, 691, 903, 1567, 1683, 1702, 2235, 2333, 2673
TseFI GTSAC 3 cut(s) 682, 1132, 1693
TseI GCWGC 4 cut(s) 820, 918, 1200, 1741
Tsp45I GTSAC 3 cut(s) 682, 1132, 1693
TspGWI ACGGA 1 cut(s) 2678
TspRI CASTG 9 cut(s) 457, 691, 903, 1567, 1683, 1702, 2235, 2333, 2673
Van91I CCANNNNNTGG 1 cut(s) 1963
Vha464I CTTAAG 1 cut(s) 1898
VspI ATTAAT 1 cut(s) 1379
XagI CCTNNNNNAGG 2 cut(s) 145, 1457
XapI RAATTY 4 cut(s) 245, 416, 1781, 2516
XbaI TCTAGA 4 cut(s) 238, 496, 1882, 1891
XceI RCATGY 2 cut(s) 896, 2726
XhoI CTCGAG 1 cut(s) 2648
XmiI GTMKAC 1 cut(s) 2629
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 7 cut(s) 29, 239, 497, 1728, 1883, 1892, 2351
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.