RchiOBHm_Chr4g0420561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000089
Physical Location & Seq
Forward (+)
46341896 .. 46346426
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39030

Sequence Viewer

Length: 708 bp
ATGGATGAGTGGTTAGCTCTTATTAAACACAGAACTAGTGTGGGATTTAAGGAGAAGTGTCAAAAATTCAAGAGAATGCGGGCAGGAAGAACTTTACTACATAGAACTAGTAGAAAAAGAAGTTTCGCGCGGCTTGAAGAAGAATTGAGGGAACAAAGTGAAAATCTAGATGCAATATCAAGGTCTGATATATGGATACATGCTTATGACGCAAAGAAGAAGAAGAGTTCAGATGAAGTAGTTGAGGATCCGGAAATAGTGAAACAAGTGAAGCAGAAAAGGGCAGAGCAAGAACCTTCACAAACATCTTCTTTGAAAGATGATGCTGTAGCACAAGTTCTAGGACTTGATCCAAGAGGACGGGTAAGAGGGTTAGGATTTGGAGCAGTCCCTTCAAAGTTAGAATATCAAACCAAAGTTGCAAACAAAGTTGCTAACTTAGAGAAACAAGTGTCCACTCAAGCACAAAATATGCTTTCTCAATCACAAGAGATTGAACGATTGAAAGAAGTGGTTGCCACTCTTTTAGCAAGATCAGAGAAAGAAGGGAATAACCACAATGAAAATCCTAATGTTCAACATCATAGCAGTGATGGAGTACAATGCAACCAAAATATTGCAAGTGTTCGAGGTTCTGACAGTGGGAGGCCACAAAGCAAGCAAAGCAACCAAAAGAAAACTTCAAGTATATATTCAATATTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

235

Amino Acids

26.6

Weight (kDa)

9.53

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 128 1.7e-15 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 128, 130
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 2 cut(s) 79, 130
AclWI GGATC 3 cut(s) 242, 255, 344
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 600
AgsI TTSAA 9 cut(s) 70, 137, 316, 396, 497, 505, 578, 684, 696
AhlI ACTAGT 2 cut(s) 35, 107
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwI GGATC 3 cut(s) 242, 255, 344
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 247
BccI CCATC 1 cut(s) 587
BciVI GTATCC 1 cut(s) 189
BcuI ACTAGT 2 cut(s) 35, 107
BfaI CTAG 4 cut(s) 36, 108, 167, 341
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 2 cut(s) 160, 313
BpuEI CTTGAG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 250
BseGI GGATG 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 128, 130
BshFI GGCC 1 cut(s) 649
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 1 cut(s) 649
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 247, 349, 533
BspACI CCGC 2 cut(s) 79, 130
BspANI GGCC 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 2 cut(s) 128, 130
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 3 cut(s) 242, 255, 344
BssMI GATC 3 cut(s) 247, 349, 533
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 81, 659
BstDEI CTNAG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 128, 130
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 3 cut(s) 250, 352, 536
BstMBI GATC 3 cut(s) 247, 349, 533
BstMWI GCNNNNNNNGC 2 cut(s) 209, 663
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 327
BstUI CGCG 2 cut(s) 128, 130
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 595, 646
Cac8I GCNNGC 2 cut(s) 81, 659
CfoI GCGC 1 cut(s) 130
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 599
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 17, 133, 649
CviKI_1 RGCY 3 cut(s) 17, 133, 649
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 1 cut(s) 439
DpnI GATC 3 cut(s) 249, 351, 535
DpnII GATC 3 cut(s) 247, 349, 533
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
FaeI CATG 1 cut(s) 203
FaiI YATR 9 cut(s) 102, 191, 193, 201, 207, 473, 585, 689, 691
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 4 cut(s) 36, 108, 167, 341
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 4 cut(s) 187, 232, 538, 637
Hpy188III TCNNGA 3 cut(s) 70, 167, 251
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 3 cut(s) 306, 402, 539
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4V TGCA 4 cut(s) 173, 422, 606, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 663
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 128
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 247, 349, 533
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 2 cut(s) 69, 264
LweI GCATC 2 cut(s) 160, 313
MaeI CTAG 4 cut(s) 36, 108, 167, 341
MalI GATC 3 cut(s) 249, 351, 535
MboI GATC 3 cut(s) 247, 349, 533
MboII GAAGA 7 cut(s) 99, 149, 152, 229, 232, 235, 300
MflI RGATCY 1 cut(s) 247
MluCI AATT 2 cut(s) 65, 143
MnlI CCTC 6 cut(s) 141, 238, 350, 362, 623, 639
MroI TCCGGA 1 cut(s) 250
MseI TTAA 2 cut(s) 24, 48
MslI CAYNNNNRTG 2 cut(s) 204, 588
MspI CCGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 81
MvnI CGCG 2 cut(s) 128, 130
MwoI GCNNNNNNNGC 2 cut(s) 209, 663
NdeII GATC 3 cut(s) 247, 349, 533
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 203
PctI GAATGC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 2 cut(s) 204, 588
SaqAI TTAA 2 cut(s) 24, 48
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 3 cut(s) 247, 349, 533
SetI ASST 4 cut(s) 19, 185, 298, 634
SfaNI GCATC 2 cut(s) 160, 313
SfcI CTRYAG 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 204, 588
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SpeI ACTAGT 2 cut(s) 35, 107
Sse9I AATT 2 cut(s) 65, 143
SsiI CCGC 2 cut(s) 79, 130
SspI AATATT 2 cut(s) 616, 699
SspMI CTAG 4 cut(s) 36, 108, 167, 341
TaaI ACNGT 1 cut(s) 641
TaqI TCGA 1 cut(s) 628
TasI AATT 2 cut(s) 65, 143
TatI WGTACW 1 cut(s) 598
TauI GCSGC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 24, 48
Tru9I TTAA 2 cut(s) 24, 48
TscAI CASTG 2 cut(s) 595, 646
TspDTI ATGAA 2 cut(s) 249, 576
TspRI CASTG 2 cut(s) 595, 646
XapI RAATTY 1 cut(s) 65
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 203
XspI CTAG 4 cut(s) 36, 108, 167, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.