Rorug07G0289700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000089
Physical Location & Seq
Forward (+)
28214078 .. 28216782
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0289700.1

Sequence Viewer

Length: 1443 bp
ATGCACCTGAGCGAAAATGAAGGCATCGACGGCAGTACTTTCGTGGTCACCGGCGGTTTGGGCTTCGTGGGCTCCGCACTCTGCTTGGAGCTTATCCGACGAGGAGCCCGTCAAGTCCGAGCCTTTGACCGCCGAACCTCCTCCCCTTGGTCCCCCCATCTCCTCAACCAAGGGGTCAACTGCATCCAAGGGGATGTTGTTAACAAAAAGGATGTGGAGAAGGCTCTGCGGGGGGCAGATTGTGTGTTCCACCTAGCCTCGTACGGAATGTCGGGAAAGGAAATGCTGCAATTCGGGCGTGTTGATGAGGTTAATATCAATGGAACTTGTCATATATTGGATACTTGTCTCGATTTCGGGGTCGAAAGGCTTGTGTATGTGAGCACATACAATGTTGTGTTTGGGGGAAAGGAGATTGTGAGTGGGAATGAGGCCCTGAGCTATTTTCCTATTGATAGTCATGAGGATCCATACGGCAGAAGTAAATCCATTGCTGAGCAGTTGGTTCTTAAGTACAATGCTCGTCCCTTTAGGACGAAGAATGGGAAGTGTCTGTATACCTGTGCGGTTCGTCCAGCTGCTATCTATGGACCTGGGGAAGAAAGGCACCTTCCAAGGATAGTGTCCCTAGCAAAGTTAGGCTTGATTCCGTTCAAAATTGGCGAAGCAAATGTGAAAACAGACTGGATTTATGTGGATAACCTAGTACTTGCTCTCATATTGGCGAGCATGGGCCTTTTGCATGACATTCCTGGGAGAGAGAAAGAAAGACAACCCATAGCTGCTGGCCAACCATATTTTGTATCGGACGGGTCTCCGGTCAACACCTTTGAGTTCATCCGACCACTGCTCAGAAGCTTGGATTATGATCTACCAAAGGCTTCATTGTCTGTACCTCAAGCTCTTCGTTTAGGAAGGATTTTTTGGGCAGTCTATACAATATTATATCCATGGTTGGACCGATGGTGGATTCCTCAGCCGCTTATCCTTCCTGCTGAAGTATACAAGGTTGGTGTTACACACTACTTCTCTTATCTTAAAGCCAAGGAAGAGCTTGGCTATGCCCCAGTGGTGACTCCTCGGGAGGGCATGGCTACTACAATCTCATACTGGCAGGAGAGGAAAAGGAAAACTCTGGACGGGCCTACAATATACGCATGGCTATTTTGTGTGATTGGCATGGGTGCAGTATTTTGTGCTGCTTATTTGCCAGACATAGGACCTGTACCACTCTTTAGAGCTGTTAGCCTCTTCTTTTTCCGGTCAATGTGGATAGTGCGGATGGTATTCCTTCTAGCCACTGCATTGCATGTTGGAGAGGCTGTGTATGCGTGGAAACTGGCAAAACGGGTCGATCCTGCTAATGCAAGAGGATGGTTCTGGCAGACCTTTGCTCTCGGGGTGTTTTCACTACGTCTTTTGTTGAAGAAAGCAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

53.92

Weight (kDa)

9.21

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 12 - 127 1.6e-06 NmrA-like family
3Beta_HSD PF01073 15 - 295 2.8e-83 3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase PF01370 15 - 242 1.5e-33 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 15 - 130 4.5e-09 Polysaccharide biosynthesis protein
RmlD_sub_bind PF04321 15 - 175 2.1e-09 RmlD substrate binding domain
GDP_Man_Dehyd PF16363 16 - 241 1.1e-18 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 16 - 236 6e-07 Male sterility protein
NAD_binding_10 PF13460 18 - 132 9.2e-12 NAD(P)H-binding
TMEM254 PF14934 389 - 475 6.3e-30 Transmembrane protein 254
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 606
AccI GTMKAC 2 cut(s) 557, 1002
AciI CCGC 7 cut(s) 54, 75, 130, 229, 566, 980, 1279
AclWI GGATC 3 cut(s) 461, 474, 1349
AcoI YGGCCR 1 cut(s) 787
AcuI CTGAAG 1 cut(s) 1017
AfaI GTAC 6 cut(s) 37, 263, 515, 708, 894, 1227
AfiI CCNNNNNNNGG 3 cut(s) 147, 1085, 1217
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 2 cut(s) 655, 1426
AjnI CCWGG 2 cut(s) 592, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 907, 939
AluBI AGCT 8 cut(s) 91, 441, 578, 782, 858, 902, 1054, 1241
AluI AGCT 8 cut(s) 91, 441, 578, 782, 858, 902, 1054, 1241
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 353, 819
AlwI GGATC 3 cut(s) 461, 474, 1349
Ama87I CYCGRG 2 cut(s) 1080, 1397
AoxI GGCC 4 cut(s) 432, 733, 787, 1142
ApeKI GCWGC 4 cut(s) 286, 578, 782, 1199
AspS9I GGNCC 7 cut(s) 150, 433, 590, 733, 958, 1142, 1220
AsuHPI GGTGA 2 cut(s) 40, 1084
AvaI CYCGRG 2 cut(s) 1080, 1397
AvaII GGWCC 4 cut(s) 150, 590, 958, 1220
BalI TGGCCA 1 cut(s) 789
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 74, 109
Bbv12I GWGCWC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 975
BbvI GCAGC 4 cut(s) 273, 565, 769, 1186
BccI CCATC 4 cut(s) 165, 957, 1276, 1368
BceAI ACGGC 2 cut(s) 46, 490
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 594, 753
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 353, 819
BfaI CTAG 4 cut(s) 254, 629, 704, 1295
BfrI CTTAAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 5 cut(s) 287, 579, 783, 980, 1200
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 5 cut(s) 288, 580, 784, 981, 1201
BmcAI AGTACT 2 cut(s) 37, 708
Bme1390I CCNGG 2 cut(s) 594, 753
Bme18I GGWCC 4 cut(s) 150, 590, 958, 1220
BmeT110I CYCGRG 2 cut(s) 1080, 1397
BmgT120I GGNCC 7 cut(s) 150, 433, 590, 733, 958, 1142, 1220
BmiI GGNNCC 5 cut(s) 73, 106, 152, 468, 608
BmrFI CCNGG 2 cut(s) 594, 753
BmrI ACTGGG 1 cut(s) 1061
BmsI GCATC 2 cut(s) 33, 192
BmuI ACTGGG 1 cut(s) 1061
Bpu10I CCTNAGC 3 cut(s) 8, 437, 975
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 882
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 9 cut(s) 146, 169, 187, 593, 614, 752, 950, 1044, 1079
BsaWI WCCGGW 2 cut(s) 817, 1260
BsaXI ACNNNNNCTCC 2 cut(s) 1308, 1338
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 1085, 1217
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 4 cut(s) 689, 1067, 1115, 1344
Bse3DI GCAATG 2 cut(s) 489, 1304
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 594, 753
BseDI CCNNGG 9 cut(s) 146, 169, 187, 593, 614, 752, 950, 1044, 1079
BseGI GGATG 6 cut(s) 183, 199, 217, 837, 1287, 1379
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 3 cut(s) 147, 1085, 1217
BseMI GCAATG 2 cut(s) 489, 1304
BseMII CTCAG 4 cut(s) 428, 486, 865, 989
BseNI ACTGG 4 cut(s) 689, 1067, 1115, 1344
BseRI GAGGAG 4 cut(s) 117, 130, 152, 1068
BseXI GCAGC 4 cut(s) 273, 565, 769, 1186
BsgI GTGCAG 1 cut(s) 1206
BshFI GGCC 4 cut(s) 434, 735, 789, 1144
BshNI GGYRCC 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 2 cut(s) 1080, 1397
BsiSI CCGG 3 cut(s) 51, 818, 1261
BsiWI CGTACG 1 cut(s) 261
BslFI GGGAC 3 cut(s) 136, 510, 610
BslI CCNNNNNNNGG 3 cut(s) 147, 1085, 1217
BsmAI GTCTC 2 cut(s) 353, 819
BsmFI GGGAC 3 cut(s) 136, 510, 610
BsnI GGCC 4 cut(s) 434, 735, 789, 1144
Bso31I GGTCTC 1 cut(s) 819
BsoBI CYCGRG 2 cut(s) 1080, 1397
Bsp1286I GDGCHC 3 cut(s) 74, 109, 386
Bsp143I GATC 3 cut(s) 466, 868, 1354
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 950
BspACI CCGC 7 cut(s) 54, 75, 130, 229, 566, 980, 1279
BspANI GGCC 4 cut(s) 434, 735, 789, 1144
BspCNI CTCAG 4 cut(s) 429, 487, 864, 988
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 5 cut(s) 73, 106, 152, 468, 608
BspPI GGATC 3 cut(s) 461, 474, 1349
BspQI GCTCTTC 2 cut(s) 909, 1044
BspT107I GGYRCC 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 819
BsrDI GCAATG 2 cut(s) 489, 1304
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 4 cut(s) 689, 1067, 1115, 1344
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 9 cut(s) 146, 169, 187, 593, 614, 752, 950, 1044, 1079
BssMI GATC 3 cut(s) 466, 868, 1354
BssNAI GTATAC 2 cut(s) 558, 1003
BssT1I CCWWGG 6 cut(s) 146, 169, 187, 614, 950, 1044
Bst1107I GTATAC 2 cut(s) 558, 1003
Bst2UI CCWGG 2 cut(s) 594, 753
Bst6I CTCTTC 3 cut(s) 909, 1044, 1256
BstAFI CTTAAG 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 727, 787
BstDEI CTNAG 5 cut(s) 8, 437, 495, 851, 975
BstDSI CCRYGG 1 cut(s) 950
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 6 cut(s) 183, 199, 217, 837, 1287, 1379
BstKTI GATC 3 cut(s) 469, 871, 1357
BstMAI GTCTC 2 cut(s) 353, 819
BstMBI GATC 3 cut(s) 466, 868, 1354
BstMWI GCNNNNNNNGC 5 cut(s) 30, 60, 69, 295, 1328
BstNI CCWGG 2 cut(s) 594, 753
BstNSI RCATGY 1 cut(s) 1313
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 592, 751
BstV1I GCAGC 4 cut(s) 273, 565, 769, 1186
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZ17I GTATAC 2 cut(s) 558, 1003
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 4 cut(s) 434, 735, 789, 1144
BtgI CCRYGG 1 cut(s) 950
BtsCI GGATG 6 cut(s) 183, 199, 217, 837, 1287, 1379
BtsI GCAGTG 2 cut(s) 845, 1299
BtsIMutI CAGTG 3 cut(s) 845, 1074, 1299
Cac8I GCNNGC 2 cut(s) 727, 787
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 7 cut(s) 150, 433, 590, 733, 958, 1142, 1220
Csp6I GTAC 6 cut(s) 36, 262, 514, 707, 893, 1226
CviAII CATG 8 cut(s) 461, 730, 743, 951, 1090, 1158, 1180, 1310
CviQI GTAC 6 cut(s) 36, 262, 514, 707, 893, 1226
DdeI CTNAG 5 cut(s) 8, 437, 495, 851, 975
DpnI GATC 3 cut(s) 468, 870, 1356
DpnII GATC 3 cut(s) 466, 868, 1354
EaeI YGGCCR 1 cut(s) 787
Eam1104I CTCTTC 3 cut(s) 909, 1044, 1256
EarI CTCTTC 3 cut(s) 909, 1044, 1256
Eco130I CCWWGG 6 cut(s) 146, 169, 187, 614, 950, 1044
Eco24I GRGCYC 2 cut(s) 74, 109
Eco31I GGTCTC 1 cut(s) 819
Eco47I GGWCC 4 cut(s) 150, 590, 958, 1220
Eco57I CTGAAG 1 cut(s) 1017
Eco88I CYCGRG 2 cut(s) 1080, 1397
Eco91I GGTNACC 1 cut(s) 46
EcoO109I RGGNCCY 2 cut(s) 433, 1220
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 592, 751
EcoT14I CCWWGG 6 cut(s) 146, 169, 187, 614, 950, 1044
EcoT38I GRGCYC 2 cut(s) 74, 109
ErhI CCWWGG 6 cut(s) 146, 169, 187, 614, 950, 1044
FaeI CATG 8 cut(s) 464, 733, 746, 954, 1093, 1161, 1183, 1313
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 3 cut(s) 136, 510, 610
FatI CATG 8 cut(s) 460, 729, 742, 950, 1089, 1157, 1179, 1309
FauI CCCGC 1 cut(s) 222
FblI GTMKAC 2 cut(s) 557, 1002
Fnu4HI GCNGC 5 cut(s) 287, 579, 783, 980, 1200
FokI GGATG 6 cut(s) 170, 206, 224, 824, 1294, 1386
FriOI GRGCYC 2 cut(s) 74, 109
Fsp4HI GCNGC 5 cut(s) 287, 579, 783, 980, 1200
FspBI CTAG 4 cut(s) 254, 629, 704, 1295
GluI GCNGC 5 cut(s) 287, 579, 783, 980, 1200
HaeIII GGCC 4 cut(s) 434, 735, 789, 1144
HapII CCGG 3 cut(s) 51, 818, 1261
Hin1II CATG 8 cut(s) 464, 733, 746, 954, 1093, 1161, 1183, 1313
HincII GTYRAC 3 cut(s) 178, 202, 823
HindII GTYRAC 3 cut(s) 178, 202, 823
HindIII AAGCTT 1 cut(s) 856
HinfI GANTC 3 cut(s) 646, 970, 1075
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 3 cut(s) 51, 818, 1261
HphI GGTGA 2 cut(s) 40, 1084
Hpy166II GTNNAC 5 cut(s) 178, 202, 558, 823, 1003
Hpy188I TCNGA 5 cut(s) 98, 119, 808, 842, 854
Hpy188III TCNNGA 5 cut(s) 273, 350, 461, 1082, 1136
Hpy8I GTNNAC 5 cut(s) 178, 202, 558, 823, 1003
Hpy99I CGWCG 2 cut(s) 32, 102
HpyAV CCTTC 6 cut(s) 14, 214, 620, 909, 998, 1301
HpyCH4IV ACGT 1 cut(s) 1414
HpyCH4V TGCA 8 cut(s) 4, 183, 289, 742, 1187, 1304, 1309, 1367
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 60, 69, 295, 1328
HpyF3I CTNAG 5 cut(s) 8, 437, 495, 851, 975
HpySE526I ACGT 1 cut(s) 1414
Hsp92II CATG 8 cut(s) 464, 733, 746, 954, 1093, 1161, 1183, 1313
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 466, 868, 1354
LguI GCTCTTC 2 cut(s) 909, 1044
LmnI GCTCC 3 cut(s) 77, 88, 104
Lsp1109I GCAGC 4 cut(s) 273, 565, 769, 1186
LweI GCATC 2 cut(s) 33, 192
MaeI CTAG 4 cut(s) 254, 629, 704, 1295
MaeII ACGT 1 cut(s) 1414
MaeIII GTNAC 3 cut(s) 46, 1015, 1072
MalI GATC 3 cut(s) 468, 870, 1356
MboI GATC 3 cut(s) 466, 868, 1354
MboII GAAGA 6 cut(s) 550, 611, 896, 1061, 1243, 1438
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 3 cut(s) 74, 109, 386
MlsI TGGCCA 1 cut(s) 789
MluCI AATT 2 cut(s) 290, 657
MluNI TGGCCA 1 cut(s) 789
MlyI GAGTC 1 cut(s) 1069
MmeI TCCRAC 4 cut(s) 121, 865, 936, 1294
Mox20I TGGCCA 1 cut(s) 789
MscI TGGCCA 1 cut(s) 789
MseI TTAA 4 cut(s) 201, 312, 510, 1038
Msp20I TGGCCA 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 578
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 3 cut(s) 51, 818, 1261
MspR9I CCNGG 2 cut(s) 594, 753
MvaI CCWGG 2 cut(s) 594, 753
MwoI GCNNNNNNNGC 5 cut(s) 30, 60, 69, 295, 1328
NcoI CCATGG 1 cut(s) 950
NdeII GATC 3 cut(s) 466, 868, 1354
NlaIII CATG 8 cut(s) 464, 733, 746, 954, 1093, 1161, 1183, 1313
NlaIV GGNNCC 5 cut(s) 73, 106, 152, 468, 608
NmuCI GTSAC 2 cut(s) 46, 1072
NspI RCATGY 1 cut(s) 1313
PagI TCATGA 1 cut(s) 460
PciSI GCTCTTC 2 cut(s) 909, 1044
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PfeI GAWTC 2 cut(s) 646, 970
Pfl23II CGTACG 1 cut(s) 261
PkrI GCNGC 5 cut(s) 288, 580, 784, 981, 1201
PleI GAGTC 1 cut(s) 1069
PpsI GAGTC 1 cut(s) 1069
PpuMI RGGWCCY 1 cut(s) 1220
Psp5II RGGWCCY 1 cut(s) 1220
Psp6I CCWGG 2 cut(s) 592, 751
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 592, 751
PspLI CGTACG 1 cut(s) 261
PspN4I GGNNCC 5 cut(s) 73, 106, 152, 468, 608
PspPI GGNCC 7 cut(s) 150, 433, 590, 733, 958, 1142, 1220
PspPPI RGGWCCY 1 cut(s) 1220
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 6 cut(s) 37, 263, 515, 708, 894, 1227
RsaNI GTAC 6 cut(s) 36, 262, 514, 707, 893, 1226
SapI GCTCTTC 2 cut(s) 909, 1044
SaqAI TTAA 4 cut(s) 201, 312, 510, 1038
SatI GCNGC 5 cut(s) 287, 579, 783, 980, 1200
Sau3AI GATC 3 cut(s) 466, 868, 1354
Sau96I GGNCC 7 cut(s) 150, 433, 590, 733, 958, 1142, 1220
ScaI AGTACT 2 cut(s) 37, 708
SchI GAGTC 1 cut(s) 1069
ScrFI CCNGG 2 cut(s) 594, 753
SduI GDGCHC 3 cut(s) 74, 109, 386
SfaNI GCATC 2 cut(s) 33, 192
SgrAI CRCCGGYG 1 cut(s) 50
SinI GGWCC 4 cut(s) 150, 590, 958, 1220
SmlI CTYRAG 2 cut(s) 509, 897
SmoI CTYRAG 2 cut(s) 509, 897
Sse9I AATT 2 cut(s) 290, 657
SsiI CCGC 7 cut(s) 54, 75, 130, 229, 566, 980, 1279
SspI AATATT 1 cut(s) 942
SspMI CTAG 4 cut(s) 254, 629, 704, 1295
StyD4I CCNGG 2 cut(s) 592, 751
StyI CCWWGG 6 cut(s) 146, 169, 187, 614, 950, 1044
TaiI ACGT 1 cut(s) 1417
TaqI TCGA 4 cut(s) 27, 351, 363, 1353
TaqII GACCGA 1 cut(s) 975
TasI AATT 2 cut(s) 290, 657
TatI WGTACW 3 cut(s) 35, 513, 706
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 2 cut(s) 646, 970
Tru1I TTAA 4 cut(s) 201, 312, 510, 1038
Tru9I TTAA 4 cut(s) 201, 312, 510, 1038
TscAI CASTG 3 cut(s) 852, 1074, 1306
TseFI GTSAC 2 cut(s) 46, 1072
TseI GCWGC 4 cut(s) 286, 578, 782, 1199
Tsp45I GTSAC 2 cut(s) 46, 1072
TspDTI ATGAA 3 cut(s) 33, 826, 873
TspGWI ACGGA 2 cut(s) 279, 639
TspRI CASTG 3 cut(s) 852, 1074, 1306
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 4 cut(s) 150, 590, 958, 1220
XceI RCATGY 1 cut(s) 1313
XmiI GTMKAC 2 cut(s) 557, 1002
XspI CTAG 4 cut(s) 254, 629, 704, 1295
ZrmI AGTACT 2 cut(s) 37, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.