Rorug01G0312400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000089
Physical Location & Seq
Reverse (-)
43019409 .. 43022606
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0312400.1

Sequence Viewer

Length: 1851 bp
ATGAAGATGGAGATGGGTTTAGGTGGTGGGGTTTGGAAAGATGAAGATAAGGCCATGGTGGCTGCGGTTTTAGGCACTCGGGCTTTCGATTACTTGATTTCGAGCTCTGTTTCTTCGAATGAGAATTCATGCATGGGCATAGGGACCGATGAGAGCTTGCACAGCAAGCTTTCAGATCTTGTGGAGCCTCCAAACGCTTCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATTTCGAGGTCCAATTCTGGGGATTGGGTTTTGTGTTGGGGGGATGGGTCTTGTAGGGAGCCCAAGGAAGGTGAAGATTCTGAAGCTTCGAGAATTCTAAGTCTCAGGCTCGAGGATGAGACCGAGCAGACCATGAGGAAGATAGTGCTGCAGAAGTTGCACACTTTGTTTGGGAGCTCGGATGAGTATAATGGTGCTCTTGGGTTGGACCGAGTTACAGATACAGAGATGTTGTTCCTTGCATCCATGTATTTTTCGTTTCCGAGAGGGGAAGGTGGCCCGGGCAAGTGCTTGGCATCCGGCAAGCAGGTGTGGCTCTCGGACTTGTTGAAGTCAGGGTCGGATTATTGTGTCAGATCGTTTCTGGCTAGGTCTGCTGGAATCCAGACCATTGTTTTAGTCCCAACAGATGTTGGTGTGGTTGAACTGGGTTCAGTAAGATGTATACCTGAGAATTTGGAAATGTTGCAGTCGATAAGGTTATTATTTTCGACACAGGCCTCACTGACAAGGGCTAAGCCAATGGCAGCCTTGCCAGTAATGAGCAACAAGAGAGATGAGATTGTTGCACATCAAAATCATTTAAGCACTGTGGAGAGAGGAGGGGAAGGAGTTCCCAAGATTTTCGGCCAAGATTTGAACTCGGGGAACCCAGGGCGCACTCGGTACAGGGAGAAACTTGCTGTTAGGAAGGTGGAAGAGAGGCCGTGGGATGCCTATTCCAACGGGAACAGGATTGCGTTTTCTACTCCTCAAAACGGAGTTCATGGTTCAAGTTGGGGGCAGAGTCATGTTGGTGTGAAACAAGGGAGTCCGGCTGGGGTTTATGCTTCTCAAGGACCTGTGAATAATTTGCAGGAGCTTGCCAACGGAGGCAGGGATGATTTTCGGCTCAAGCCGTATCAACCGCAAAAGCAGGCGCCTATGCAAATTGACTTTTCCGGGGCTACTTCAAGGCCTTCGGTGGTTTCCCGACCCATTGTTGTTGAATCTGAGAATTCAGATGCTGAAGCTCCATGCAAGGAAGAGCTGCCAGGTACAGCTGAAGAGAGGAGGCCACGGAAACGGGGTAGGAAGCCAGCAAATGGAAGAGAAGAGCCCCTCAATCATGTTGAAGCAGAAAGGCAGCGTCGGGAGAAGCTGAACCAGCGCTTCTATGCTTTACGAGCTGTTGTGCCAAACATATCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCCATTGATTATATCAATGAGCTTCAGGCAAAGCTTAAGGTCATGGAATCTGAGAGGGAGAGTGTAGGAGGCACTTCAAGAGATACCTCAGCTTTGGTAGCTAACCCAAGTTCAGAAAATCAGATCCGGGCTCCCCATGTTGACATTCAAGCTGTGCATGATGAGGTTGTTGTAAGCGTGAGCTGCCCTTTAGATTCACACCCTGCATCAAGAATCATCCAAGCATTTAAAGAAGCTCAAATCAGTGTTGTTGAGTCGAAATTCACCGCAGCAAACGATTCTGTGTTTCATACATTTGTTGTCAAGTCTCAAGGATCTGAACAATTGACAAAGGAGAAGTTGATTGCAGCATTTTCCAGGGAATCCAACTCCTTACAATCATTGTCACCAGTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

616

Amino Acids

67.55

Weight (kDa)

6.09

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 53 - 241 3.8e-51 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 447 - 493 8.2e-13 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 531 - 602 4e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 1153
AccB7I CCANNNNNTGG 1 cut(s) 1319
AccI GTMKAC 1 cut(s) 679
AciI CCGC 3 cut(s) 65, 1142, 1719
AclWI GGATC 2 cut(s) 1570, 1774
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 7 cut(s) 124, 202, 234, 327, 688, 1231, 1712
AcuI CTGAAG 4 cut(s) 336, 1263, 1299, 1460
AcyI GRCGYC 1 cut(s) 1154
AfaI GTAC 2 cut(s) 902, 1273
AfeI AGCGCT 1 cut(s) 1385
AfiI CCNNNNNNNGG 4 cut(s) 252, 302, 992, 1319
AflII CTTAAG 1 cut(s) 1487
AgsI TTSAA 9 cut(s) 565, 659, 874, 1008, 1188, 1223, 1349, 1530, 1601
AjnI CCWGG 3 cut(s) 886, 1267, 1808
Alw21I GWGCWC 3 cut(s) 107, 413, 433
Alw26I GTCTC 3 cut(s) 341, 347, 1764
AlwI GGATC 2 cut(s) 1570, 1774
AlwNI CAGNNNCTG 1 cut(s) 1241
Ama87I CYCGRG 4 cut(s) 78, 344, 514, 877
Aor51HI AGCGCT 1 cut(s) 1385
AoxI GGCC 7 cut(s) 51, 511, 732, 862, 938, 1190, 1289
ApeKI GCWGC 8 cut(s) 62, 382, 761, 1264, 1360, 1635, 1721, 1799
ApoI RAATTY 7 cut(s) 124, 202, 234, 327, 688, 1231, 1712
Asp700I GAANNNNTTC 1 cut(s) 846
AspLEI GCGC 3 cut(s) 894, 1156, 1386
AspS9I GGNCC 5 cut(s) 144, 243, 442, 512, 1073
AsuC2I CCSGG 4 cut(s) 515, 516, 1177, 1580
AsuHPI GGTGA 3 cut(s) 317, 1708, 1830
AsuII TTCGAA 2 cut(s) 116, 200
AvaI CYCGRG 4 cut(s) 78, 344, 514, 877
AvaII GGWCC 4 cut(s) 144, 243, 442, 1073
BanI GGYRCC 1 cut(s) 1153
BanII GRGCYC 5 cut(s) 107, 297, 413, 1335, 1585
Bbv12I GWGCWC 3 cut(s) 107, 413, 433
BbvCI CCTCAGC 1 cut(s) 1540
BbvI GCAGC 8 cut(s) 49, 369, 773, 1251, 1372, 1622, 1733, 1811
BccI CCATC 3 cut(s) 7, 272, 1420
BceAI ACGGC 2 cut(s) 925, 1117
BciT130I CCWGG 3 cut(s) 888, 1269, 1810
BcnI CCSGG 4 cut(s) 515, 516, 1177, 1580
BcoDI GTCTC 3 cut(s) 341, 347, 1764
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 2 cut(s) 1157, 1387
BfrI CTTAAG 1 cut(s) 1487
BfuAI ACCTGC 1 cut(s) 532
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 175
BisI GCNGC 8 cut(s) 63, 383, 762, 1265, 1361, 1636, 1722, 1800
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 8 cut(s) 64, 384, 763, 1266, 1362, 1637, 1723, 1801
Bme1390I CCNGG 7 cut(s) 515, 516, 888, 1177, 1269, 1580, 1810
Bme18I GGWCC 4 cut(s) 144, 243, 442, 1073
BmeT110I CYCGRG 4 cut(s) 78, 344, 514, 877
BmgT120I GGNCC 5 cut(s) 144, 243, 442, 512, 1073
BmiI GGNNCC 6 cut(s) 145, 186, 294, 884, 1155, 1584
BmrFI CCNGG 7 cut(s) 515, 516, 888, 1177, 1269, 1580, 1810
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 7 cut(s) 485, 539, 937, 1228, 1441, 1445, 1667
BmuI ACTGGG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 1540
Bpu1102I GCTNAGC 1 cut(s) 750
Bpu14I TTCGAA 2 cut(s) 116, 200
BpuEI CTTGAG 3 cut(s) 1053, 1112, 1746
BpuMI CCSGG 4 cut(s) 515, 516, 1177, 1580
BsaHI GRCGYC 1 cut(s) 1154
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 9 cut(s) 54, 297, 514, 886, 887, 941, 1176, 1292, 1809
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 302, 992, 1319
Bse1I ACTGG 3 cut(s) 666, 770, 1841
BseBI CCWGG 3 cut(s) 888, 1269, 1810
BseDI CCNNGG 9 cut(s) 54, 297, 514, 886, 887, 941, 1176, 1292, 1809
BseGI GGATG 8 cut(s) 283, 355, 421, 476, 530, 952, 1120, 1668
BseLI CCNNNNNNNGG 4 cut(s) 252, 302, 992, 1319
BseMII CTCAG 5 cut(s) 352, 675, 1218, 1494, 1554
BseNI ACTGG 3 cut(s) 666, 770, 1841
BseRI GAGGAG 3 cut(s) 849, 975, 1300
BseXI GCAGC 8 cut(s) 49, 369, 773, 1251, 1372, 1622, 1733, 1811
BseYI CCCAGC 1 cut(s) 1052
BshFI GGCC 7 cut(s) 53, 513, 734, 864, 940, 1192, 1291
BshNI GGYRCC 1 cut(s) 1153
BsiHKAI GWGCWC 3 cut(s) 107, 413, 433
BsiHKCI CYCGRG 4 cut(s) 78, 344, 514, 877
BsiSI CCGG 5 cut(s) 515, 534, 1049, 1176, 1579
BslFI GGGAC 2 cut(s) 157, 620
BslI CCNNNNNNNGG 4 cut(s) 252, 302, 992, 1319
BsmAI GTCTC 3 cut(s) 341, 347, 1764
BsmFI GGGAC 2 cut(s) 157, 620
BsnI GGCC 7 cut(s) 53, 513, 734, 864, 940, 1192, 1291
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 4 cut(s) 78, 344, 514, 877
Bsp119I TTCGAA 2 cut(s) 116, 200
Bsp1286I GDGCHC 6 cut(s) 107, 297, 413, 433, 1335, 1585
Bsp143I GATC 4 cut(s) 175, 590, 1575, 1766
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 3 cut(s) 65, 1142, 1719
BspANI GGCC 7 cut(s) 53, 513, 734, 864, 940, 1192, 1291
BspCNI CTCAG 5 cut(s) 351, 676, 1219, 1495, 1553
BspLI GGNNCC 6 cut(s) 145, 186, 294, 884, 1155, 1584
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 2 cut(s) 1570, 1774
BspQI GCTCTTC 2 cut(s) 1254, 1323
BspT104I TTCGAA 2 cut(s) 116, 200
BspT107I GGYRCC 1 cut(s) 1153
BspTI CTTAAG 1 cut(s) 1487
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 3 cut(s) 666, 770, 1841
BssECI CCNNGG 9 cut(s) 54, 297, 514, 886, 887, 941, 1176, 1292, 1809
BssMI GATC 4 cut(s) 175, 590, 1575, 1766
BssNAI GTATAC 1 cut(s) 680
BssNI GRCGYC 1 cut(s) 1154
BssT1I CCWWGG 2 cut(s) 54, 297
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 3 cut(s) 888, 1269, 1810
Bst4CI ACNGT 1 cut(s) 826
Bst6I CTCTTC 5 cut(s) 927, 1254, 1275, 1318, 1323
BstACI GRCGYC 1 cut(s) 1154
BstAFI CTTAAG 1 cut(s) 1487
BstAPI GCANNNNNTGC 1 cut(s) 391
BstBI TTCGAA 2 cut(s) 116, 200
BstC8I GCNNGC 6 cut(s) 158, 167, 539, 1098, 1152, 1314
BstDEI CTNAG 7 cut(s) 332, 338, 684, 750, 1227, 1503, 1540
BstDSI CCRYGG 3 cut(s) 54, 941, 1292
BstF5I GGATG 8 cut(s) 283, 355, 421, 476, 530, 952, 1120, 1668
BstH2I RGCGCY 2 cut(s) 1157, 1387
BstHHI GCGC 3 cut(s) 894, 1156, 1386
BstKTI GATC 4 cut(s) 178, 593, 1578, 1769
BstMAI GTCTC 3 cut(s) 341, 347, 1764
BstMBI GATC 4 cut(s) 175, 590, 1575, 1766
BstNI CCWGG 3 cut(s) 888, 1269, 1810
BstSCI CCNGG 7 cut(s) 513, 514, 886, 1175, 1267, 1578, 1808
BstSFI CTRYAG 1 cut(s) 383
BstV1I GCAGC 8 cut(s) 49, 369, 773, 1251, 1372, 1622, 1733, 1811
BstX2I RGATCY 3 cut(s) 175, 1575, 1766
BstYI RGATCY 3 cut(s) 175, 1575, 1766
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 7 cut(s) 53, 513, 734, 864, 940, 1192, 1291
BtgI CCRYGG 3 cut(s) 54, 941, 1292
BtsCI GGATG 8 cut(s) 283, 355, 421, 476, 530, 952, 1120, 1668
BtsIMutI CAGTG 3 cut(s) 737, 822, 1702
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 6 cut(s) 158, 167, 539, 1098, 1152, 1314
CaiI CAGNNNCTG 1 cut(s) 1241
CfoI GCGC 3 cut(s) 894, 1156, 1386
Cfr13I GGNCC 5 cut(s) 144, 243, 442, 512, 1073
Cfr9I CCCGGG 1 cut(s) 514
CseI GACGC 1 cut(s) 1352
Csp6I GTAC 2 cut(s) 901, 1272
CviQI GTAC 2 cut(s) 901, 1272
DdeI CTNAG 7 cut(s) 332, 338, 684, 750, 1227, 1503, 1540
DinI GGCGCC 1 cut(s) 1155
DpnI GATC 4 cut(s) 177, 592, 1577, 1768
DpnII GATC 4 cut(s) 175, 590, 1575, 1766
DraI TTTAAA 1 cut(s) 1681
EaeI YGGCCR 1 cut(s) 862
Eam1104I CTCTTC 5 cut(s) 927, 1254, 1275, 1318, 1323
EarI CTCTTC 5 cut(s) 927, 1254, 1275, 1318, 1323
Ecl136II GAGCTC 2 cut(s) 105, 411
Eco130I CCWWGG 2 cut(s) 54, 297
Eco147I AGGCCT 2 cut(s) 734, 1192
Eco24I GRGCYC 5 cut(s) 107, 297, 413, 1335, 1585
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 4 cut(s) 144, 243, 442, 1073
Eco47III AGCGCT 1 cut(s) 1385
Eco53kI GAGCTC 2 cut(s) 105, 411
Eco57I CTGAAG 4 cut(s) 336, 1263, 1299, 1460
Eco88I CYCGRG 4 cut(s) 78, 344, 514, 877
EcoICRI GAGCTC 2 cut(s) 105, 411
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRI GAATTC 3 cut(s) 124, 327, 1231
EcoRII CCWGG 3 cut(s) 886, 1267, 1808
EcoT14I CCWWGG 2 cut(s) 54, 297
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 5 cut(s) 107, 297, 413, 1335, 1585
EgeI GGCGCC 1 cut(s) 1155
EheI GGCGCC 1 cut(s) 1155
ErhI CCWWGG 2 cut(s) 54, 297
FaqI GGGAC 2 cut(s) 157, 620
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 8 cut(s) 63, 383, 762, 1265, 1361, 1636, 1722, 1800
FokI GGATG 8 cut(s) 290, 362, 428, 463, 517, 959, 1127, 1655
FriOI GRGCYC 5 cut(s) 107, 297, 413, 1335, 1585
Fsp4HI GCNGC 8 cut(s) 63, 383, 762, 1265, 1361, 1636, 1722, 1800
FspBI CTAG 1 cut(s) 603
GlaI GCGC 3 cut(s) 893, 1155, 1385
GluI GCNGC 8 cut(s) 63, 383, 762, 1265, 1361, 1636, 1722, 1800
GsaI CCCAGC 1 cut(s) 1056
HaeII RGCGCY 2 cut(s) 1157, 1387
HaeIII GGCC 7 cut(s) 53, 513, 734, 864, 940, 1192, 1291
HapII CCGG 5 cut(s) 515, 534, 1049, 1176, 1579
HgaI GACGC 1 cut(s) 1352
HhaI GCGC 3 cut(s) 894, 1156, 1386
Hin1I GRCGYC 1 cut(s) 1154
Hin6I GCGC 3 cut(s) 892, 1154, 1384
HinP1I GCGC 3 cut(s) 892, 1154, 1384
HincII GTYRAC 1 cut(s) 1594
HindII GTYRAC 1 cut(s) 1594
HindIII AAGCTT 3 cut(s) 167, 318, 1484
HpaII CCGG 5 cut(s) 515, 534, 1049, 1176, 1579
HphI GGTGA 3 cut(s) 317, 1708, 1830
Hpy166II GTNNAC 2 cut(s) 680, 1594
Hpy188III TCNNGA 6 cut(s) 324, 619, 1206, 1367, 1530, 1662
Hpy8I GTNNAC 2 cut(s) 680, 1594
Hpy99I CGWCG 1 cut(s) 1368
HpyAV CCTTC 5 cut(s) 296, 500, 836, 919, 1203
HpyCH4III ACNGT 1 cut(s) 826
HpyF3I CTNAG 7 cut(s) 332, 338, 684, 750, 1227, 1503, 1540
Hsp92I GRCGYC 1 cut(s) 1154
HspAI GCGC 3 cut(s) 892, 1154, 1384
KasI GGCGCC 1 cut(s) 1153
Kzo9I GATC 4 cut(s) 175, 590, 1575, 1766
LguI GCTCTTC 2 cut(s) 1254, 1323
LmnI GCTCC 6 cut(s) 184, 292, 408, 1093, 1252, 1588
Lsp1109I GCAGC 8 cut(s) 49, 369, 773, 1251, 1372, 1622, 1733, 1811
LweI GCATC 7 cut(s) 485, 539, 937, 1228, 1441, 1445, 1667
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 448, 1836
MalI GATC 4 cut(s) 177, 592, 1577, 1768
MboI GATC 4 cut(s) 175, 590, 1575, 1766
MfeI CAATTG 1 cut(s) 1775
MflI RGATCY 3 cut(s) 175, 1575, 1766
MhlI GDGCHC 6 cut(s) 107, 297, 413, 433, 1335, 1585
Mly113I GGCGCC 1 cut(s) 1154
MlyI GAGTC 3 cut(s) 1030, 1054, 1715
MmeI TCCRAC 4 cut(s) 420, 555, 981, 1842
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 3 cut(s) 818, 1488, 1680
MslI CAYNNNNRTG 1 cut(s) 1029
MspA1I CMGCKG 2 cut(s) 210, 1277
MspCI CTTAAG 1 cut(s) 1487
MspI CCGG 5 cut(s) 515, 534, 1049, 1176, 1579
MspR9I CCNGG 7 cut(s) 515, 516, 888, 1177, 1269, 1580, 1810
MunI CAATTG 1 cut(s) 1775
MvaI CCWGG 3 cut(s) 888, 1269, 1810
NarI GGCGCC 1 cut(s) 1154
NciI CCSGG 4 cut(s) 515, 516, 1177, 1580
NcoI CCATGG 1 cut(s) 54
NdeII GATC 4 cut(s) 175, 590, 1575, 1766
NlaIV GGNNCC 6 cut(s) 145, 186, 294, 884, 1155, 1584
NmuCI GTSAC 1 cut(s) 1836
NsiI ATGCAT 1 cut(s) 134
NspV TTCGAA 2 cut(s) 116, 200
PaeR7I CTCGAG 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 532
PasI CCCWGGG 1 cut(s) 887
PceI AGGCCT 2 cut(s) 734, 1192
PciSI GCTCTTC 2 cut(s) 1254, 1323
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 8 cut(s) 311, 615, 1223, 1499, 1646, 1665, 1730, 1814
PflMI CCANNNNNTGG 1 cut(s) 1319
PkrI GCNGC 8 cut(s) 64, 384, 763, 1266, 1362, 1637, 1723, 1801
PleI GAGTC 3 cut(s) 1029, 1053, 1714
PluTI GGCGCC 1 cut(s) 1157
PpsI GAGTC 3 cut(s) 1029, 1053, 1714
PpuMI RGGWCCY 1 cut(s) 1073
Psp124BI GAGCTC 2 cut(s) 107, 413
Psp5II RGGWCCY 1 cut(s) 1073
Psp6I CCWGG 3 cut(s) 886, 1267, 1808
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 3 cut(s) 886, 1267, 1808
PspN4I GGNNCC 6 cut(s) 145, 186, 294, 884, 1155, 1584
PspPI GGNCC 5 cut(s) 144, 243, 442, 512, 1073
PspPPI RGGWCCY 1 cut(s) 1073
PspXI VCTCGAGB 1 cut(s) 344
PstI CTGCAG 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 1241
PsuI RGATCY 3 cut(s) 175, 1575, 1766
PvuII CAGCTG 2 cut(s) 210, 1277
RsaI GTAC 2 cut(s) 902, 1273
RsaNI GTAC 2 cut(s) 901, 1272
RseI CAYNNNNRTG 1 cut(s) 1029
SacI GAGCTC 2 cut(s) 107, 413
SapI GCTCTTC 2 cut(s) 1254, 1323
SaqAI TTAA 3 cut(s) 818, 1488, 1680
SatI GCNGC 8 cut(s) 63, 383, 762, 1265, 1361, 1636, 1722, 1800
Sau3AI GATC 4 cut(s) 175, 590, 1575, 1766
Sau96I GGNCC 5 cut(s) 144, 243, 442, 512, 1073
SchI GAGTC 3 cut(s) 1030, 1054, 1715
ScrFI CCNGG 7 cut(s) 515, 516, 888, 1177, 1269, 1580, 1810
SduI GDGCHC 6 cut(s) 107, 297, 413, 433, 1335, 1585
SfaNI GCATC 7 cut(s) 485, 539, 937, 1228, 1441, 1445, 1667
SfcI CTRYAG 1 cut(s) 383
SfoI GGCGCC 1 cut(s) 1155
Sfr274I CTCGAG 1 cut(s) 344
SfuI TTCGAA 2 cut(s) 116, 200
SinI GGWCC 4 cut(s) 144, 243, 442, 1073
SlaI CTCGAG 1 cut(s) 344
SmaI CCCGGG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 5 cut(s) 344, 1068, 1127, 1487, 1761
SmoI CTYRAG 5 cut(s) 344, 1068, 1127, 1487, 1761
SrfI GCCCGGGC 1 cut(s) 516
SseBI AGGCCT 2 cut(s) 734, 1192
SsiI CCGC 3 cut(s) 65, 1142, 1719
SspDI GGCGCC 1 cut(s) 1153
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 2 cut(s) 107, 413
StuI AGGCCT 2 cut(s) 734, 1192
StyD4I CCNGG 7 cut(s) 513, 514, 886, 1175, 1267, 1578, 1808
StyI CCWWGG 2 cut(s) 54, 297
TaaI ACNGT 1 cut(s) 826
TaqII GACCGA 3 cut(s) 161, 371, 459
TfiI GAWTC 8 cut(s) 311, 615, 1223, 1499, 1646, 1665, 1730, 1814
Tru1I TTAA 3 cut(s) 818, 1488, 1680
Tru9I TTAA 3 cut(s) 818, 1488, 1680
TscAI CASTG 3 cut(s) 744, 829, 1702
TseFI GTSAC 1 cut(s) 1836
TseI GCWGC 8 cut(s) 62, 382, 761, 1264, 1360, 1635, 1721, 1799
Tsp45I GTSAC 1 cut(s) 1836
TspDTI ATGAA 5 cut(s) 17, 57, 117, 989, 1730
TspGWI ACGGA 3 cut(s) 1008, 1119, 1309
TspMI CCCGGG 1 cut(s) 514
TspRI CASTG 3 cut(s) 744, 829, 1702
Van91I CCANNNNNTGG 1 cut(s) 1319
Vha464I CTTAAG 1 cut(s) 1487
VpaK11BI GGWCC 4 cut(s) 144, 243, 442, 1073
XapI RAATTY 7 cut(s) 124, 202, 234, 327, 688, 1231, 1712
XhoI CTCGAG 1 cut(s) 344
XmaI CCCGGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.