Rw1G003060

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
5566595 .. 5569415
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003060.1

Sequence Viewer

Length: 1089 bp
ATGAGAAGTTCTCACAAGAGGAAACATAAAAGGAACAGTGCCGACCCTTCTTCTGTATCTAGAGTTAAAGTTTGGATCAGATCACGTACCAGAAAGGATGGTAAACCAGTAAACACTGAAGTTTTTGAAACTATAGAGAGGGTGAATGTAGTTGAAAGTGATTTGCCATCATCCTCAACAACTAATGTGAGAGAAGATGCTCTATCTAAAGTCTTAGGACACGATAAACCTGGACGACTAAGAGGAATGGGAAGAGGAATGACCATCAGCAAATTGGCATTCTTTCAAACTAAGGACAAGCATGTGGCTAAGATGCAAGAGCAACAAATTAACATGCAAGACAGGATAAATCATTTGGAGAACTTGGTCAATAAATTAGTGAAAAATAAGATTCAACAAAGTGAGGAAGAGGAGAAAACATCTCCAATGAGCGTCAACACCAACTCATTGAATAAGTGCAAGCTACTAGATTGGAGTGGAACAGAGGACATTGTTGCTGAAGGTCGTTGGGTTTCAAGTGATCCAGAAGAGTCTGTCAATGAAATTCCCTTGGGACCTAATGTAATGAAAGTCTTGGTTGATATCTCAAATAAACCAGATGCTTTTCTTTGGAGGCCTACATCTAATATGTTTTGTTTTCAACATGCTCAAGGTAAAACAATAGCATGGCCTGCTGACAGAGTTATTTTTCAAATGGATCAGCAGTCTGAGGAACAAGACAATTTATCTATGCCTTCGAGTTCATACAACAACTCAAGGAACAAGTGCAAATTATTTGATTGGACTGGAAAAGATGAAGTAGTTGCAGAAGGACGTTGGCATTCAAGTGATCCAAAAGCGTTGGTAAATGGTATTCCTCTTGGACCTAATGCCATGATAGTTTGGGTAGATATTCCAAAGAATCATGAAGCATTTTTATGGAGGCCTACAATTGATATGACTTGCATTGAAGATGCCGTGAATTCTGCTATAGCATGGCCAGCTAACAAAGTTGTTTTGGAAAAGATATCAGAAAGTCAAGATGGTGAAAATGCATCCTCTCCTTCGATCAGGTTGTTCATTTTGTTCCCTTGGGGCCTAATGCTATGA

Protein Analysis

362

Amino Acids

41.02

Weight (kDa)

7.7

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 3 - 87 3.3e-10 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 252 - 333 1.5e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 83, 515, 705, 824
AcoI YGGCCR 1 cut(s) 977
AcsI RAATTY 2 cut(s) 543, 961
AcuI CTGAAG 2 cut(s) 138, 519
AfaI GTAC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 463, 983
AluI AGCT 2 cut(s) 463, 983
AlwI GGATC 4 cut(s) 83, 515, 705, 824
AoxI GGCC 5 cut(s) 614, 668, 923, 977, 1075
ApoI RAATTY 2 cut(s) 543, 961
AspS9I GGNCC 3 cut(s) 554, 863, 1075
AsuHPI GGTGA 2 cut(s) 154, 1037
AvaII GGWCC 2 cut(s) 554, 863
BalI TGGCCA 1 cut(s) 979
BccI CCATC 4 cut(s) 92, 175, 272, 1016
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 1 cut(s) 231
BfaI CTAG 2 cut(s) 60, 467
BfmI CTRYAG 2 cut(s) 132, 969
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 554, 863
BmgT120I GGNCC 3 cut(s) 554, 863, 1075
BmiI GGNNCC 2 cut(s) 555, 1076
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 5 cut(s) 187, 303, 589, 943, 1043
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 633, 739
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 549, 1070
Bse1I ACTGG 2 cut(s) 107, 790
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 549, 1070
BseGI GGATG 3 cut(s) 103, 170, 1034
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 2 cut(s) 107, 790
BseRI GAGGAG 1 cut(s) 425
BshFI GGCC 5 cut(s) 616, 670, 925, 979, 1077
BslFI GGGAC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 2 cut(s) 278, 820
BsnI GGCC 5 cut(s) 616, 670, 925, 979, 1077
Bsp143I GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
BspANI GGCC 5 cut(s) 616, 670, 925, 979, 1077
BspCNI CTCAG 1 cut(s) 700
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 555, 1076
BspPI GGATC 4 cut(s) 83, 515, 705, 824
BsrI ACTGG 2 cut(s) 107, 790
BssECI CCNNGG 2 cut(s) 549, 1070
BssMI GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
BssT1I CCWWGG 2 cut(s) 549, 1070
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 3 cut(s) 247, 402, 522
BstAPI GCANNNNNTGC 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 461, 672, 981
BstDEI CTNAG 5 cut(s) 214, 239, 291, 309, 708
BstF5I GGATG 3 cut(s) 103, 170, 1034
BstKTI GATC 6 cut(s) 78, 83, 523, 700, 832, 1050
BstMBI GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 671, 980
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 3 cut(s) 305, 337, 647
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 132, 969
BsuRI GGCC 5 cut(s) 616, 670, 925, 979, 1077
BtsCI GGATG 3 cut(s) 103, 170, 1034
BtsIMutI CAGTG 2 cut(s) 43, 114
Cac8I GCNNGC 3 cut(s) 461, 672, 981
CciI TCATGA 1 cut(s) 904
Cfr13I GGNCC 3 cut(s) 554, 863, 1075
CseI GACGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 87
CviAII CATG 7 cut(s) 302, 334, 644, 666, 874, 905, 975
CviJI RGCY 8 cut(s) 308, 463, 616, 670, 925, 979, 983, 1077
CviKI_1 RGCY 8 cut(s) 308, 463, 616, 670, 925, 979, 983, 1077
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 5 cut(s) 214, 239, 291, 309, 708
DpnI GATC 6 cut(s) 77, 82, 522, 699, 831, 1049
DpnII GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
EaeI YGGCCR 1 cut(s) 977
Eam1104I CTCTTC 3 cut(s) 247, 402, 522
EarI CTCTTC 3 cut(s) 247, 402, 522
Eco130I CCWWGG 2 cut(s) 549, 1070
Eco147I AGGCCT 2 cut(s) 616, 925
Eco32I GATATC 2 cut(s) 583, 1008
Eco47I GGWCC 2 cut(s) 554, 863
Eco57I CTGAAG 2 cut(s) 138, 519
EcoO109I RGGNCCY 2 cut(s) 554, 1075
EcoRI GAATTC 1 cut(s) 961
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 2 cut(s) 583, 1008
EcoT14I CCWWGG 2 cut(s) 549, 1070
EcoT22I ATGCAT 1 cut(s) 1036
ErhI CCWWGG 2 cut(s) 549, 1070
FaeI CATG 7 cut(s) 305, 337, 647, 669, 877, 908, 978
FaqI GGGAC 1 cut(s) 567
FatI CATG 7 cut(s) 301, 333, 643, 665, 873, 904, 974
FokI GGATG 3 cut(s) 110, 157, 1021
FspBI CTAG 2 cut(s) 60, 467
HaeIII GGCC 5 cut(s) 616, 670, 925, 979, 1077
HgaI GACGC 1 cut(s) 421
Hin1II CATG 7 cut(s) 305, 337, 647, 669, 877, 908, 978
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 391, 530, 901
HphI GGTGA 2 cut(s) 154, 1037
Hpy166II GTNNAC 3 cut(s) 104, 112, 436
Hpy188I TCNGA 3 cut(s) 80, 709, 1012
Hpy188III TCNNGA 4 cut(s) 60, 524, 905, 1019
Hpy8I GTNNAC 3 cut(s) 104, 112, 436
HpyAV CCTTC 5 cut(s) 57, 494, 744, 803, 1053
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 2 cut(s) 85, 814
HpyCH4V TGCA 7 cut(s) 316, 337, 459, 768, 806, 945, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 980
HpyF3I CTNAG 5 cut(s) 214, 239, 291, 309, 708
HpySE526I ACGT 2 cut(s) 85, 814
Hsp92II CATG 7 cut(s) 305, 337, 647, 669, 877, 908, 978
Kzo9I GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
LweI GCATC 5 cut(s) 187, 303, 589, 943, 1043
MaeI CTAG 2 cut(s) 60, 467
MaeII ACGT 2 cut(s) 85, 814
MalI GATC 6 cut(s) 77, 82, 522, 699, 831, 1049
MboI GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
MboII GAAGA 6 cut(s) 42, 206, 264, 419, 539, 962
MfeI CAATTG 1 cut(s) 930
MlsI TGGCCA 1 cut(s) 979
MluCI AATT 8 cut(s) 272, 327, 374, 543, 721, 770, 930, 961
MluNI TGGCCA 1 cut(s) 979
MlyI GAGTC 1 cut(s) 539
Mox20I TGGCCA 1 cut(s) 979
Mph1103I ATGCAT 1 cut(s) 1036
MscI TGGCCA 1 cut(s) 979
MseI TTAA 2 cut(s) 66, 330
MslI CAYNNNNRTG 2 cut(s) 825, 916
Msp20I TGGCCA 1 cut(s) 979
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 2 cut(s) 278, 820
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 671, 980
NdeII GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
NlaIII CATG 7 cut(s) 305, 337, 647, 669, 877, 908, 978
NlaIV GGNNCC 2 cut(s) 555, 1076
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 3 cut(s) 305, 337, 647
PagI TCATGA 1 cut(s) 904
PceI AGGCCT 2 cut(s) 616, 925
PctI GAATGC 2 cut(s) 278, 820
PfeI GAWTC 2 cut(s) 391, 901
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 555, 1076
PspPI GGNCC 3 cut(s) 554, 863, 1075
PspPPI RGGWCCY 1 cut(s) 554
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 2 cut(s) 825, 916
SaqAI TTAA 2 cut(s) 66, 330
Sau3AI GATC 6 cut(s) 75, 80, 520, 697, 829, 1047
Sau96I GGNCC 3 cut(s) 554, 863, 1075
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 231
SfaNI GCATC 5 cut(s) 187, 303, 589, 943, 1043
SfcI CTRYAG 2 cut(s) 132, 969
SinI GGWCC 2 cut(s) 554, 863
SmiMI CAYNNNNRTG 2 cut(s) 825, 916
SmlI CTYRAG 2 cut(s) 648, 754
SmoI CTYRAG 2 cut(s) 648, 754
Sse9I AATT 8 cut(s) 272, 327, 374, 543, 721, 770, 930, 961
SseBI AGGCCT 2 cut(s) 616, 925
SspMI CTAG 2 cut(s) 60, 467
StuI AGGCCT 2 cut(s) 616, 925
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 2 cut(s) 549, 1070
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 2 cut(s) 88, 817
TaqI TCGA 2 cut(s) 737, 1046
TasI AATT 8 cut(s) 272, 327, 374, 543, 721, 770, 930, 961
TfiI GAWTC 2 cut(s) 391, 901
Tru1I TTAA 2 cut(s) 66, 330
Tru9I TTAA 2 cut(s) 66, 330
TscAI CASTG 2 cut(s) 43, 121
TspDTI ATGAA 6 cut(s) 555, 581, 732, 810, 921, 1048
TspRI CASTG 2 cut(s) 43, 121
VpaK11BI GGWCC 2 cut(s) 554, 863
XapI RAATTY 2 cut(s) 543, 961
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 3 cut(s) 305, 337, 647
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 60, 467
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.