Rmu_sc0002438.1_g000018

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002438.1
Physical Location & Seq
Reverse (-)
71919 .. 73212
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002438.1_g000018.1.cds

Sequence Viewer

Length: 723 bp
atggggagaggaatgcccatcagcaaattggcattctttcagactaaggacaagcatgtggctaagatgcaagagcaacaaattaacatgcaagacaggataaatcatttggagaacttggtcaataaattagtgaaaaataagagcgtcaacaccaactcattgaataagtgcaagctactagattggagcggaacagaggacattgttgctgaaggtcgttgggtttcaagtgatccagaagagtctgtcaatgaaattcccttgggacctaatgcaatgaaagtcttggttgatatctcaaataaaccagatgcttttctttggaggcctacatctaatatgttttgttttcaacatgctcaagatgaaatagttgcagaaggaagttggcattcaagtgatccaaaagcgttggtaaatggtattcctcttggacctagtgccatgatagtttgggtagatattccaaagaatcatgtcgcgtttttatggaggcctacaactgatatgacatgcattgaagatgctatgaattctgctatagcatggcctgctaacaaagttgttttggaaaagatatcagaaagtcaagatggtgaaaatgcatcctctccttcgagtgtcaactccaaatcaaagaaaaggtgcaagttgttggatgttagtggatcaggacaaatagttgctgaaggacgttggtcctcaagtgatctagattag

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

5.78

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 485
AciI CCGC 1 cut(s) 192
AclWI GGATC 3 cut(s) 230, 398, 679
AcsI RAATTY 2 cut(s) 258, 535
AcuI CTGAAG 2 cut(s) 234, 711
AgsI TTSAA 5 cut(s) 166, 231, 356, 399, 524
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AlwI GGATC 3 cut(s) 230, 398, 679
AoxI GGCC 3 cut(s) 329, 497, 551
ApoI RAATTY 2 cut(s) 258, 535
AspS9I GGNCC 3 cut(s) 269, 437, 702
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 3 cut(s) 269, 437, 702
BccI CCATC 2 cut(s) 26, 590
BfaI CTAG 3 cut(s) 182, 441, 716
BfmI CTRYAG 1 cut(s) 543
Bme18I GGWCC 3 cut(s) 269, 437, 702
BmgT120I GGNCC 3 cut(s) 269, 437, 702
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 4 cut(s) 57, 304, 517, 617
BoxI GACNNNNGTC 1 cut(s) 700
BpuEI CTTGAG 2 cut(s) 348, 691
BsaJI CCNNGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 608, 667
BseMI GCAATG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 3 cut(s) 331, 499, 553
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsmI GAATGC 3 cut(s) 18, 32, 394
BsnI GGCC 3 cut(s) 331, 499, 553
Bsp143I GATC 4 cut(s) 235, 403, 671, 712
BspACI CCGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 331, 499, 553
BspFNI CGCG 1 cut(s) 485
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 3 cut(s) 230, 398, 679
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 4 cut(s) 235, 403, 671, 712
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 176, 555
BstDEI CTNAG 2 cut(s) 45, 63
BstF5I GGATG 2 cut(s) 608, 667
BstFNI CGCG 1 cut(s) 485
BstKTI GATC 4 cut(s) 238, 406, 674, 715
BstMBI GATC 4 cut(s) 235, 403, 671, 712
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNSI RCATGY 4 cut(s) 59, 91, 362, 519
BstPAI GACNNNNGTC 1 cut(s) 700
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 1 cut(s) 485
BsuRI GGCC 3 cut(s) 331, 499, 553
BtsCI GGATG 2 cut(s) 608, 667
Cac8I GCNNGC 2 cut(s) 176, 555
Cfr13I GGNCC 3 cut(s) 269, 437, 702
CseI GACGC 1 cut(s) 136
CviAII CATG 7 cut(s) 56, 88, 359, 448, 479, 516, 549
CviJI RGCY 5 cut(s) 62, 178, 331, 499, 553
CviKI_1 RGCY 5 cut(s) 62, 178, 331, 499, 553
DdeI CTNAG 2 cut(s) 45, 63
DpnI GATC 4 cut(s) 237, 405, 673, 714
DpnII GATC 4 cut(s) 235, 403, 671, 712
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 264
Eco147I AGGCCT 2 cut(s) 331, 499
Eco32I GATATC 2 cut(s) 298, 582
Eco47I GGWCC 3 cut(s) 269, 437, 702
Eco57I CTGAAG 2 cut(s) 234, 711
EcoO109I RGGNCCY 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 535
EcoRV GATATC 2 cut(s) 298, 582
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 2 cut(s) 521, 610
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 7 cut(s) 59, 91, 362, 451, 482, 519, 552
FaqI GGGAC 1 cut(s) 282
FatI CATG 7 cut(s) 55, 87, 358, 447, 478, 515, 548
FokI GGATG 2 cut(s) 595, 674
FspBI CTAG 3 cut(s) 182, 441, 716
HaeIII GGCC 3 cut(s) 331, 499, 553
HgaI GACGC 1 cut(s) 136
Hin1II CATG 7 cut(s) 59, 91, 362, 451, 482, 519, 552
HincII GTYRAC 2 cut(s) 151, 628
HindII GTYRAC 2 cut(s) 151, 628
HinfI GANTC 2 cut(s) 245, 475
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 2 cut(s) 151, 628
Hpy188I TCNGA 2 cut(s) 42, 586
Hpy188III TCNNGA 5 cut(s) 239, 365, 593, 675, 716
Hpy8I GTNNAC 2 cut(s) 151, 628
HpyAV CCTTC 4 cut(s) 209, 377, 627, 686
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 8 cut(s) 70, 91, 174, 278, 380, 519, 608, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 45, 63
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 7 cut(s) 59, 91, 362, 451, 482, 519, 552
Kzo9I GATC 4 cut(s) 235, 403, 671, 712
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 82, 252, 324, 567, 660
LweI GCATC 4 cut(s) 57, 304, 517, 617
MaeI CTAG 3 cut(s) 182, 441, 716
MaeII ACGT 1 cut(s) 697
MalI GATC 4 cut(s) 237, 405, 673, 714
MbiI CCGCTC 1 cut(s) 192
MboI GATC 4 cut(s) 235, 403, 671, 712
MboII GAAGA 2 cut(s) 254, 536
MluCI AATT 5 cut(s) 26, 81, 128, 258, 535
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 6 cut(s) 193, 321, 441, 489, 622, 715
Mph1103I ATGCAT 2 cut(s) 521, 610
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 399
Mva1269I GAATGC 3 cut(s) 18, 32, 394
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 4 cut(s) 235, 403, 671, 712
NlaIII CATG 7 cut(s) 59, 91, 362, 451, 482, 519, 552
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 521, 610
NspI RCATGY 4 cut(s) 59, 91, 362, 519
PceI AGGCCT 2 cut(s) 331, 499
PctI GAATGC 3 cut(s) 18, 32, 394
PfeI GAWTC 1 cut(s) 475
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 269
PshAI GACNNNNGTC 1 cut(s) 700
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 269, 437, 702
PspPPI RGGWCCY 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 4 cut(s) 235, 403, 671, 712
Sau96I GGNCC 3 cut(s) 269, 437, 702
SchI GAGTC 1 cut(s) 254
SetI ASST 6 cut(s) 180, 220, 274, 442, 650, 700
SfaNI GCATC 4 cut(s) 57, 304, 517, 617
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 3 cut(s) 269, 437, 702
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 363, 706
SmoI CTYRAG 2 cut(s) 363, 706
Sse9I AATT 5 cut(s) 26, 81, 128, 258, 535
SseBI AGGCCT 2 cut(s) 331, 499
SsiI CCGC 1 cut(s) 192
SspMI CTAG 3 cut(s) 182, 441, 716
StuI AGGCCT 2 cut(s) 331, 499
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 700
TaqI TCGA 1 cut(s) 620
TasI AATT 5 cut(s) 26, 81, 128, 258, 535
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspDTI ATGAA 4 cut(s) 270, 296, 384, 548
VpaK11BI GGWCC 3 cut(s) 269, 437, 702
XapI RAATTY 2 cut(s) 258, 535
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 4 cut(s) 59, 91, 362, 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 3 cut(s) 182, 441, 716
Zsp2I ATGCAT 2 cut(s) 521, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.