RchiOBHm_Chr4g0444771

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000089
Physical Location & Seq
Reverse (-)
65406757 .. 65408596
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41240

Sequence Viewer

Length: 414 bp
ATGGGAAGAGAAGTTACTATAAGCAAATTAGCCTTCTTACAGTCTAGGGACAAGCATGTGCTCCAGCTAGAAGAGCAACACACTGATATGCGAAGTAGAATCAAGCATTTGGAGAGCTTAGTCCATAAATTAATTGGACATCATGAGAGTGTGAACAAAAACTCCAAGAAAAAGTGCAACTTGTTAGATTTCAGTGGTTCGGGAAAAATAGTTGCAGAAGGACATTGGTCTTCAAGTGATCCAGTCGAGCTTGTTCATTTTGTTCCTTTAGGTCTTAATGCTACGAGAGTTTGGGTTGATATCCCAAGGGTCCCTAATGCATCTCTTTGGATGCCAACATCTGAGCTACATTGCATTGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTGACAAAGTTGTTATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

137

Amino Acids

15.44

Weight (kDa)

7.13

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 55 - 135 3.8e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 386
AfaI GTAC 1 cut(s) 373
AgsI TTSAA 2 cut(s) 234, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 5 cut(s) 67, 117, 250, 346, 383
AluI AGCT 5 cut(s) 67, 117, 250, 346, 383
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 386
AseI ATTAAT 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 388
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 397
BfaI CTAG 2 cut(s) 45, 68
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 311, 312
BmsI GCATC 3 cut(s) 321, 329, 352
BoxI GACNNNNGTC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 242
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 63
BslFI GGGAC 2 cut(s) 62, 296
BsmFI GGGAC 2 cut(s) 62, 296
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 311, 312
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 118, 342
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 81, 199
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 372
CviAII CATG 2 cut(s) 56, 143
CviJI RGCY 7 cut(s) 32, 67, 117, 250, 346, 383, 388
CviKI_1 RGCY 7 cut(s) 32, 67, 117, 250, 346, 383, 388
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 2 cut(s) 118, 342
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 305
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 310
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 59, 146
FaiI YATR 6 cut(s) 20, 57, 89, 126, 144, 407
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 62, 296
FatI CATG 2 cut(s) 55, 142
FokI GGATG 1 cut(s) 343
FspBI CTAG 2 cut(s) 45, 68
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 388
Hin1II CATG 2 cut(s) 59, 146
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 343, 394
Hpy188III TCNNGA 2 cut(s) 143, 201
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 43, 212
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 177, 215, 320, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 118, 342
Hsp92II CATG 2 cut(s) 59, 146
KflI GGGWCCC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 2 cut(s) 77, 255
LweI GCATC 3 cut(s) 321, 329, 352
MaeI CTAG 2 cut(s) 45, 68
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 4 cut(s) 18, 83, 222, 371
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 388
MluCI AATT 3 cut(s) 26, 128, 132
MluNI TGGCCA 1 cut(s) 388
Mox20I TGGCCA 1 cut(s) 388
Mph1103I ATGCAT 1 cut(s) 322
MscI TGGCCA 1 cut(s) 388
MseI TTAA 2 cut(s) 131, 276
MslI CAYNNNNRTG 2 cut(s) 86, 147
Msp20I TGGCCA 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 59, 146
NlaIV GGNNCC 2 cut(s) 311, 312
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 59
PagI TCATGA 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 311, 312
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 2 cut(s) 86, 147
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 131, 276
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 63
SetI ASST 6 cut(s) 69, 119, 252, 274, 348, 385
SfaNI GCATC 3 cut(s) 321, 329, 352
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 86, 147
Sse9I AATT 3 cut(s) 26, 128, 132
SspMI CTAG 2 cut(s) 45, 68
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 26, 128, 132
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 131, 276
Tru9I TTAA 2 cut(s) 131, 276
TscAI CASTG 2 cut(s) 88, 199
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 88, 199
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 131
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 2 cut(s) 45, 68
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.