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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 376, 404, 582 |
| AcoI | YGGCCR | 1 cut(s) | 557 |
| AcsI | RAATTY | 1 cut(s) | 232 |
| AcuI | CTGAAG | 1 cut(s) | 408 |
| AfaI | GTAC | 2 cut(s) | 17, 544 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 501 |
| AgsI | TTSAA | 4 cut(s) | 96, 221, 530, 596 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 522, 554 |
| AluBI | AGCT | 1 cut(s) | 517 |
| AluI | AGCT | 1 cut(s) | 517 |
| AlwI | GGATC | 3 cut(s) | 376, 404, 582 |
| AoxI | GGCC | 5 cut(s) | 194, 248, 443, 503, 557 |
| ApoI | RAATTY | 1 cut(s) | 232 |
| AspS9I | GGNCC | 3 cut(s) | 134, 399, 443 |
| AsuHPI | GGTGA | 1 cut(s) | 308 |
| AvaII | GGWCC | 2 cut(s) | 134, 399 |
| BalI | TGGCCA | 1 cut(s) | 559 |
| BccI | CCATC | 2 cut(s) | 287, 514 |
| BceAI | ACGGC | 1 cut(s) | 212 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| Bme18I | GGWCC | 2 cut(s) | 134, 399 |
| BmgT120I | GGNCC | 3 cut(s) | 134, 399, 443 |
| BmiI | GGNNCC | 1 cut(s) | 444 |
| BmsI | GCATC | 4 cut(s) | 214, 314, 500, 523 |
| BoxI | GACNNNNGTC | 1 cut(s) | 397 |
| BpuEI | CTTGAG | 2 cut(s) | 10, 388 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaJI | CCNNGG | 1 cut(s) | 438 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 501 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 438 |
| BseGI | GGATG | 3 cut(s) | 305, 364, 491 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 501 |
| BseMII | CTCAG | 1 cut(s) | 504 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BshFI | GGCC | 5 cut(s) | 196, 250, 445, 505, 559 |
| BslFI | GGGAC | 2 cut(s) | 387, 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 501 |
| BsmFI | GGGAC | 2 cut(s) | 387, 467 |
| BsmI | GAATGC | 1 cut(s) | 91 |
| BsnI | GGCC | 5 cut(s) | 196, 250, 445, 505, 559 |
| Bsp1407I | TGTACA | 1 cut(s) | 15 |
| Bsp143I | GATC | 4 cut(s) | 368, 409, 415, 587 |
| BspANI | GGCC | 5 cut(s) | 196, 250, 445, 505, 559 |
| BspCNI | CTCAG | 1 cut(s) | 505 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 1 cut(s) | 444 |
| BspPI | GGATC | 3 cut(s) | 376, 404, 582 |
| BsrGI | TGTACA | 1 cut(s) | 15 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 1 cut(s) | 438 |
| BssMI | GATC | 4 cut(s) | 368, 409, 415, 587 |
| BssT1I | CCWWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 1 cut(s) | 20 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 251 |
| BstAUI | TGTACA | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 2 cut(s) | 252, 561 |
| BstDEI | CTNAG | 1 cut(s) | 513 |
| BstF5I | GGATG | 3 cut(s) | 305, 364, 491 |
| BstKTI | GATC | 4 cut(s) | 371, 412, 418, 590 |
| BstMBI | GATC | 4 cut(s) | 368, 409, 415, 587 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 251, 560 |
| BstNSI | RCATGY | 1 cut(s) | 216 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 397 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 587 |
| BstYI | RGATCY | 1 cut(s) | 587 |
| BsuRI | GGCC | 5 cut(s) | 196, 250, 445, 505, 559 |
| BtsCI | GGATG | 3 cut(s) | 305, 364, 491 |
| Cac8I | GCNNGC | 2 cut(s) | 252, 561 |
| CciI | TCATGA | 1 cut(s) | 175 |
| Cfr13I | GGNCC | 3 cut(s) | 134, 399, 443 |
| Csp6I | GTAC | 2 cut(s) | 16, 543 |
| CviAII | CATG | 5 cut(s) | 145, 176, 213, 246, 555 |
| CviJI | RGCY | 6 cut(s) | 196, 250, 445, 505, 517, 559 |
| CviKI_1 | RGCY | 6 cut(s) | 196, 250, 445, 505, 517, 559 |
| CviQI | GTAC | 2 cut(s) | 16, 543 |
| DdeI | CTNAG | 1 cut(s) | 513 |
| DpnI | GATC | 4 cut(s) | 370, 411, 417, 589 |
| DpnII | GATC | 4 cut(s) | 368, 409, 415, 587 |
| EaeI | YGGCCR | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 1 cut(s) | 438 |
| Eco147I | AGGCCT | 1 cut(s) | 196 |
| Eco32I | GATATC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 2 cut(s) | 134, 399 |
| Eco57I | CTGAAG | 1 cut(s) | 408 |
| EcoO109I | RGGNCCY | 1 cut(s) | 443 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoRV | GATATC | 1 cut(s) | 279 |
| EcoT14I | CCWWGG | 1 cut(s) | 438 |
| EcoT22I | ATGCAT | 2 cut(s) | 218, 307 |
| ErhI | CCWWGG | 1 cut(s) | 438 |
| FaeI | CATG | 5 cut(s) | 148, 179, 216, 249, 558 |
| FaiI | YATR | 9 cut(s) | 146, 177, 190, 209, 214, 242, 247, 455, 556 |
| FaqI | GGGAC | 2 cut(s) | 387, 467 |
| FatI | CATG | 5 cut(s) | 144, 175, 212, 245, 554 |
| FokI | GGATG | 3 cut(s) | 292, 371, 478 |
| HaeIII | GGCC | 5 cut(s) | 196, 250, 445, 505, 559 |
| Hin1II | CATG | 5 cut(s) | 148, 179, 216, 249, 558 |
| HincII | GTYRAC | 1 cut(s) | 325 |
| HindII | GTYRAC | 1 cut(s) | 325 |
| HinfI | GANTC | 1 cut(s) | 172 |
| HphI | GGTGA | 1 cut(s) | 308 |
| Hpy166II | GTNNAC | 1 cut(s) | 325 |
| Hpy188I | TCNGA | 3 cut(s) | 283, 514, 585 |
| Hpy188III | TCNNGA | 4 cut(s) | 176, 290, 372, 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 325 |
| HpyAV | CCTTC | 4 cut(s) | 15, 74, 324, 383 |
| HpyCH4III | ACNGT | 1 cut(s) | 20 |
| HpyCH4IV | ACGT | 2 cut(s) | 85, 394 |
| HpyCH4V | TGCA | 5 cut(s) | 77, 216, 305, 348, 491 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 251, 560 |
| HpyF3I | CTNAG | 1 cut(s) | 513 |
| HpySE526I | ACGT | 2 cut(s) | 85, 394 |
| Hsp92II | CATG | 5 cut(s) | 148, 179, 216, 249, 558 |
| Kzo9I | GATC | 4 cut(s) | 368, 409, 415, 587 |
| LpnPI | CCDG | 6 cut(s) | 42, 264, 404, 426, 503, 573 |
| LweI | GCATC | 4 cut(s) | 214, 314, 500, 523 |
| MaeII | ACGT | 2 cut(s) | 85, 394 |
| MaeIII | GTNAC | 1 cut(s) | 20 |
| MalI | GATC | 4 cut(s) | 370, 411, 417, 589 |
| MboI | GATC | 4 cut(s) | 368, 409, 415, 587 |
| MboII | GAAGA | 2 cut(s) | 233, 542 |
| MflI | RGATCY | 1 cut(s) | 587 |
| MlsI | TGGCCA | 1 cut(s) | 559 |
| MluCI | AATT | 3 cut(s) | 41, 232, 522 |
| MluNI | TGGCCA | 1 cut(s) | 559 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 5 cut(s) | 138, 186, 319, 412, 495 |
| Mox20I | TGGCCA | 1 cut(s) | 559 |
| Mph1103I | ATGCAT | 2 cut(s) | 218, 307 |
| MscI | TGGCCA | 1 cut(s) | 559 |
| Msp20I | TGGCCA | 1 cut(s) | 559 |
| Mva1269I | GAATGC | 1 cut(s) | 91 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 251, 560 |
| NdeII | GATC | 4 cut(s) | 368, 409, 415, 587 |
| NlaIII | CATG | 5 cut(s) | 148, 179, 216, 249, 558 |
| NlaIV | GGNNCC | 1 cut(s) | 444 |
| NsiI | ATGCAT | 2 cut(s) | 218, 307 |
| NspI | RCATGY | 1 cut(s) | 216 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PceI | AGGCCT | 1 cut(s) | 196 |
| PctI | GAATGC | 1 cut(s) | 91 |
| PfeI | GAWTC | 1 cut(s) | 172 |
| PshAI | GACNNNNGTC | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 1 cut(s) | 444 |
| PspPI | GGNCC | 3 cut(s) | 134, 399, 443 |
| PsuI | RGATCY | 1 cut(s) | 587 |
| RsaI | GTAC | 2 cut(s) | 17, 544 |
| RsaNI | GTAC | 2 cut(s) | 16, 543 |
| Sau3AI | GATC | 4 cut(s) | 368, 409, 415, 587 |
| Sau96I | GGNCC | 3 cut(s) | 134, 399, 443 |
| SetI | ASST | 6 cut(s) | 88, 139, 347, 397, 423, 519 |
| SfaNI | GCATC | 4 cut(s) | 214, 314, 500, 523 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SinI | GGWCC | 2 cut(s) | 134, 399 |
| SmlI | CTYRAG | 2 cut(s) | 25, 403 |
| SmoI | CTYRAG | 2 cut(s) | 25, 403 |
| Sse9I | AATT | 3 cut(s) | 41, 232, 522 |
| SseBI | AGGCCT | 1 cut(s) | 196 |
| StuI | AGGCCT | 1 cut(s) | 196 |
| StyI | CCWWGG | 1 cut(s) | 438 |
| TaaI | ACNGT | 1 cut(s) | 20 |
| TaiI | ACGT | 2 cut(s) | 88, 397 |
| TaqI | TCGA | 2 cut(s) | 8, 317 |
| TasI | AATT | 3 cut(s) | 41, 232, 522 |
| TatI | WGTACW | 1 cut(s) | 15 |
| TfiI | GAWTC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 3 cut(s) | 81, 192, 416 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| VpaK11BI | GGWCC | 2 cut(s) | 134, 399 |
| XapI | RAATTY | 1 cut(s) | 232 |
| XceI | RCATGY | 1 cut(s) | 216 |
| Zsp2I | ATGCAT | 2 cut(s) | 218, 307 |