FvH4_4g16173

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000089
Physical Location & Seq
Reverse (-)
20127112 .. 20129615
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16173.t1

Sequence Viewer

Length: 1266 bp
ATGCCGACAGAGAGGAAAAGAATTAGAACAGAAGAGCCACCCGAGTCTAGGGGTGCTCCAAGGATCGAACCTGCAGCTGATATCCAACAAGAAGCTGGTAGCAGTGAGGTTACTCCAAATGGTGGCAAAGGGAAAAAGAGAGCATCCGTGAAGTTTAGCTCAGCTGTTGGGTGTATAGTCAGGGAGCAGGTCCCGATCAACATACAAGACTGGCGTTTAGTGGAAGATAAACCTAAAAATGAAGTATGGGGTCTTTTGTTGCAACAATATAAGGTGGATCTTATTCATAAGCCATACATCCTCCAACAAACGGGAAGGCTTTGGAGAGCTTATAAGTCTGAACTCACCAGTAGCATGATGACTGTTCTAGATTCTCGTCGCAGCAGGACAGAAACTGCACGGCTCCTCGGTTTGATTAAACCAGCTGATATGCCACAGGTAGAGTGGGATGCATTTGTGGCAGAAAGAAGCTCGGGTGAATGGAAAGCAAAAAGTGAAAAAATGAAGGCAGTAAGAGCTAAACAACTGCTTCCTCACACTCTAAGCCGAAAAGGGTATGCAAGAGAGGAGTACATGCATGTTGAGATGGAAGCCAAACTTGCCCAGCAACCTCCTACTGAAGGGCCTATTCCTGTAAAGCATGATGTACTGAGTCAAGTACTTGGTAAGGAGAAAAATGGCCGTGTCCGAGGTATAGGAGCAGGCATCACACCTTCAAGGGTAGATGCCCAACTACAAACTGGTTGTTGGAAACAAGCATTTGAGGAAAGACTTGAGGCGAACTATGAAAGGACAAAGATGCTGGAGGAAATCGTTTTTCGACTAATTGGGGCCAAAACTTCTACTGCCAGTGTTAGTAATGTGTTTGTTGGTAGTGAGACTGGAAGTATGGGCACAAGCAGTCATGCTAATGCACAGGATGCAACTGAAATTGGTGAAAAAGAAACTACACCTAGCCCTATGACTAGAAATTCTAAGTCTGTACAAGGAAGCTGCCTCCAGCAGCTTGGTGTTAATCAACCCTACAACATAATTGATTGGCTGGGCACAGATGAAGTGGTGGCAAAAGGAAGAATATCAACAGTTGACCCTTTAACCACAGTACATGACTACAAGCTGGGACCGGATTGTTATAGAGTAGAAATTGAGGAAGCAATCAATCCTAGAGTCGAATTCTACCGTTTCCAGCCTGAATTTTCAGCCATGGAAGATGCAATTGGAAGTACCATTGCTTGGCCGATCAAGTACATTGCCCTTCGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

422

Amino Acids

47.16

Weight (kDa)

8.66

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 349 - 419 9e-08 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc36I ACCTGC 2 cut(s) 79, 178
AccB7I CCANNNNNTGG 2 cut(s) 122, 1233
AclWI GGATC 2 cut(s) 71, 285
AcoI YGGCCR 2 cut(s) 679, 1235
AcsI RAATTY 3 cut(s) 970, 1172, 1193
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 7 cut(s) 572, 648, 660, 984, 1104, 1225, 1247
AfiI CCNNNNNNNGG 5 cut(s) 48, 122, 310, 620, 1233
AgsI TTSAA 1 cut(s) 717
AjuI GAANNNNNNNTTGG 2 cut(s) 1200, 1232
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 872
AlwI GGATC 2 cut(s) 71, 285
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 2 cut(s) 41, 472
AoxI GGCC 4 cut(s) 623, 679, 831, 1235
ApeKI GCWGC 4 cut(s) 74, 381, 993, 1003
ApoI RAATTY 3 cut(s) 970, 1172, 1193
AspS9I GGNCC 4 cut(s) 190, 623, 831, 1121
AsuHPI GGTGA 3 cut(s) 337, 488, 947
AvaI CYCGRG 2 cut(s) 41, 472
AvaII GGWCC 2 cut(s) 190, 1121
BaeGI GKGCMC 2 cut(s) 896, 1049
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 4 cut(s) 86, 393, 980, 1015
BccI CCATC 1 cut(s) 580
BceAI ACGGC 2 cut(s) 416, 666
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 5 cut(s) 48, 368, 954, 966, 1164
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 2 cut(s) 79, 178
BisI GCNGC 4 cut(s) 75, 382, 994, 1004
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 4 cut(s) 76, 383, 995, 1005
BmcAI AGTACT 1 cut(s) 660
Bme18I GGWCC 2 cut(s) 190, 1121
BmeT110I CYCGRG 2 cut(s) 41, 472
BmgT120I GGNCC 4 cut(s) 190, 623, 831, 1121
BmiI GGNNCC 4 cut(s) 192, 404, 832, 1122
BmsI GCATC 7 cut(s) 152, 439, 714, 715, 789, 910, 1201
BpmI CTGGAG 2 cut(s) 824, 983
Bpu1102I GCTNAGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 794
BsaJI CCNNGG 4 cut(s) 59, 406, 688, 1203
BsaWI WCCGGW 1 cut(s) 1123
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 122, 310, 620, 1233
Bse1I ACTGG 5 cut(s) 215, 348, 745, 849, 886
Bse3DI GCAATG 2 cut(s) 1227, 1248
BseDI CCNNGG 4 cut(s) 59, 406, 688, 1203
BseGI GGATG 4 cut(s) 143, 297, 454, 925
BseLI CCNNNNNNNGG 5 cut(s) 48, 122, 310, 620, 1233
BseMI GCAATG 2 cut(s) 1227, 1248
BseMII CTCAG 2 cut(s) 174, 641
BseNI ACTGG 5 cut(s) 215, 348, 745, 849, 886
BseRI GAGGAG 2 cut(s) 395, 581
BseSI GKGCMC 2 cut(s) 896, 1049
BseXI GCAGC 4 cut(s) 86, 393, 980, 1015
BseYI CCCAGC 3 cut(s) 603, 1042, 1117
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 4 cut(s) 625, 681, 833, 1237
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 2 cut(s) 41, 472
BsiSI CCGG 1 cut(s) 1124
BslFI GGGAC 2 cut(s) 176, 1134
BslI CCNNNNNNNGG 5 cut(s) 48, 122, 310, 620, 1233
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 2 cut(s) 176, 1134
BsnI GGCC 4 cut(s) 625, 681, 833, 1237
BsoBI CYCGRG 2 cut(s) 41, 472
Bsp1286I GDGCHC 3 cut(s) 58, 896, 1049
Bsp1407I TGTACA 1 cut(s) 982
Bsp143I GATC 4 cut(s) 63, 195, 277, 1239
Bsp1720I GCTNAGC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 1203
BspANI GGCC 4 cut(s) 625, 681, 833, 1237
BspCNI CTCAG 2 cut(s) 173, 642
BspLI GGNNCC 4 cut(s) 192, 404, 832, 1122
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 2 cut(s) 79, 178
BspPI GGATC 2 cut(s) 71, 285
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 1227, 1248
BsrGI TGTACA 1 cut(s) 982
BsrI ACTGG 5 cut(s) 215, 348, 745, 849, 886
BssECI CCNNGG 4 cut(s) 59, 406, 688, 1203
BssMI GATC 4 cut(s) 63, 195, 277, 1239
BssT1I CCWWGG 2 cut(s) 59, 1203
Bst4CI ACNGT 4 cut(s) 364, 1084, 1102, 1181
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 920
BstAUI TGTACA 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 4 cut(s) 160, 542, 650, 975
BstDSI CCRYGG 1 cut(s) 1203
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 4 cut(s) 143, 297, 454, 925
BstKTI GATC 4 cut(s) 66, 198, 280, 1242
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 4 cut(s) 63, 195, 277, 1239
BstMWI GCNNNNNNNGC 4 cut(s) 458, 515, 599, 920
BstNSI RCATGY 2 cut(s) 577, 581
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 2 cut(s) 896, 1049
BstV1I GCAGC 4 cut(s) 86, 393, 980, 1015
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 1007
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 4 cut(s) 625, 681, 833, 1237
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 4 cut(s) 143, 297, 454, 925
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 109, 856
BveI ACCTGC 2 cut(s) 79, 178
Cac8I GCNNGC 1 cut(s) 703
CaiI CAGNNNCTG 1 cut(s) 395
Cfr13I GGNCC 4 cut(s) 190, 623, 831, 1121
Csp6I GTAC 7 cut(s) 571, 647, 659, 983, 1103, 1224, 1246
CviAII CATG 7 cut(s) 355, 574, 578, 641, 905, 1106, 1204
CviQI GTAC 7 cut(s) 571, 647, 659, 983, 1103, 1224, 1246
DdeI CTNAG 4 cut(s) 160, 542, 650, 975
DpnI GATC 4 cut(s) 65, 197, 279, 1241
DpnII GATC 4 cut(s) 63, 195, 277, 1239
EaeI YGGCCR 2 cut(s) 679, 1235
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 59, 1203
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 190, 1121
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 2 cut(s) 41, 472
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 2 cut(s) 190, 623
EcoRI GAATTC 1 cut(s) 1172
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 59, 1203
EcoT22I ATGCAT 2 cut(s) 454, 579
ErhI CCWWGG 2 cut(s) 59, 1203
FaeI CATG 7 cut(s) 358, 577, 581, 644, 908, 1109, 1207
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 2 cut(s) 176, 1134
FatI CATG 7 cut(s) 354, 573, 577, 640, 904, 1105, 1203
Fnu4HI GCNGC 4 cut(s) 75, 382, 994, 1004
FokI GGATG 4 cut(s) 130, 284, 461, 932
Fsp4HI GCNGC 4 cut(s) 75, 382, 994, 1004
FspBI CTAG 5 cut(s) 48, 368, 954, 966, 1164
GluI GCNGC 4 cut(s) 75, 382, 994, 1004
GsaI CCCAGC 3 cut(s) 607, 1046, 1121
GsuI CTGGAG 2 cut(s) 824, 983
HaeIII GGCC 4 cut(s) 625, 681, 833, 1237
HapII CCGG 1 cut(s) 1124
Hin1II CATG 7 cut(s) 358, 577, 581, 644, 908, 1109, 1207
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HinfI GANTC 4 cut(s) 44, 371, 652, 1167
HpaII CCGG 1 cut(s) 1124
HphI GGTGA 3 cut(s) 337, 488, 947
Hpy166II GTNNAC 1 cut(s) 1087
Hpy188I TCNGA 2 cut(s) 340, 689
Hpy188III TCNNGA 2 cut(s) 193, 368
Hpy8I GTNNAC 1 cut(s) 1087
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 5 cut(s) 309, 499, 614, 723, 1265
HpyCH4III ACNGT 4 cut(s) 364, 1084, 1102, 1181
HpyCH4V TGCA 9 cut(s) 74, 262, 398, 452, 560, 577, 914, 923, 1214
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 515, 599, 920
HpyF3I CTNAG 4 cut(s) 160, 542, 650, 975
Hsp92II CATG 7 cut(s) 358, 577, 581, 644, 908, 1109, 1207
Kzo9I GATC 4 cut(s) 63, 195, 277, 1239
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 4 cut(s) 61, 184, 408, 698
Lsp1109I GCAGC 4 cut(s) 86, 393, 980, 1015
LweI GCATC 7 cut(s) 152, 439, 714, 715, 789, 910, 1201
MaeI CTAG 5 cut(s) 48, 368, 954, 966, 1164
MaeIII GTNAC 1 cut(s) 109
MalI GATC 4 cut(s) 65, 197, 279, 1241
MboI GATC 4 cut(s) 63, 195, 277, 1239
MboII GAAGA 4 cut(s) 44, 236, 1083, 1220
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 3 cut(s) 58, 896, 1049
MluCI AATT 9 cut(s) 21, 825, 930, 970, 1032, 1143, 1172, 1193, 1215
MlyI GAGTC 3 cut(s) 53, 661, 1176
MmeI TCCRAC 3 cut(s) 109, 328, 728
Mph1103I ATGCAT 2 cut(s) 454, 579
MseI TTAA 4 cut(s) 417, 1014, 1094, 1264
MslI CAYNNNNRTG 1 cut(s) 909
MspA1I CMGCKG 3 cut(s) 77, 164, 425
MspI CCGG 1 cut(s) 1124
MunI CAATTG 1 cut(s) 1215
MwoI GCNNNNNNNGC 4 cut(s) 458, 515, 599, 920
NcoI CCATGG 1 cut(s) 1203
NdeII GATC 4 cut(s) 63, 195, 277, 1239
NlaIII CATG 7 cut(s) 358, 577, 581, 644, 908, 1109, 1207
NlaIV GGNNCC 4 cut(s) 192, 404, 832, 1122
NsiI ATGCAT 2 cut(s) 454, 579
NspI RCATGY 2 cut(s) 577, 581
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 371
PflMI CCANNNNNTGG 2 cut(s) 122, 1233
PkrI GCNGC 4 cut(s) 76, 383, 995, 1005
PleI GAGTC 3 cut(s) 52, 660, 1175
PpsI GAGTC 3 cut(s) 52, 660, 1175
PpuMI RGGWCCY 1 cut(s) 190
PsiI TTATAA 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 190
PspFI CCCAGC 3 cut(s) 603, 1042, 1117
PspN4I GGNNCC 4 cut(s) 192, 404, 832, 1122
PspPI GGNCC 4 cut(s) 190, 623, 831, 1121
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 3 cut(s) 77, 164, 425
RsaI GTAC 7 cut(s) 572, 648, 660, 984, 1104, 1225, 1247
RsaNI GTAC 7 cut(s) 571, 647, 659, 983, 1103, 1224, 1246
RseI CAYNNNNRTG 1 cut(s) 909
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 417, 1014, 1094, 1264
SatI GCNGC 4 cut(s) 75, 382, 994, 1004
Sau3AI GATC 4 cut(s) 63, 195, 277, 1239
Sau96I GGNCC 4 cut(s) 190, 623, 831, 1121
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 3 cut(s) 53, 661, 1176
SduI GDGCHC 3 cut(s) 58, 896, 1049
SfaNI GCATC 7 cut(s) 152, 439, 714, 715, 789, 910, 1201
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 190, 1121
SmiMI CAYNNNNRTG 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 9 cut(s) 21, 825, 930, 970, 1032, 1143, 1172, 1193, 1215
SspMI CTAG 5 cut(s) 48, 368, 954, 966, 1164
StyI CCWWGG 2 cut(s) 59, 1203
TaaI ACNGT 4 cut(s) 364, 1084, 1102, 1181
TaqI TCGA 3 cut(s) 66, 820, 1170
TasI AATT 9 cut(s) 21, 825, 930, 970, 1032, 1143, 1172, 1193, 1215
TatI WGTACW 6 cut(s) 570, 646, 658, 982, 1102, 1245
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 4 cut(s) 417, 1014, 1094, 1264
Tru9I TTAA 4 cut(s) 417, 1014, 1094, 1264
TscAI CASTG 2 cut(s) 109, 856
TseI GCWGC 4 cut(s) 74, 381, 993, 1003
TspDTI ATGAA 5 cut(s) 255, 275, 518, 801, 1068
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 109, 856
Van91I CCANNNNNTGG 2 cut(s) 122, 1233
VpaK11BI GGWCC 2 cut(s) 190, 1121
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 3 cut(s) 970, 1172, 1193
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 2 cut(s) 577, 581
XcmI CCANNNNNNNNNTGG 3 cut(s) 92, 441, 737
XspI CTAG 5 cut(s) 48, 368, 954, 966, 1164
ZrmI AGTACT 1 cut(s) 660
Zsp2I ATGCAT 2 cut(s) 454, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.