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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 260 |
| Acc36I | ACCTGC | 1 cut(s) | 260 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AccII | CGCG | 1 cut(s) | 379 |
| AccIII | TCCGGA | 1 cut(s) | 289 |
| AciI | CCGC | 2 cut(s) | 377, 527 |
| AclWI | GGATC | 2 cut(s) | 281, 294 |
| AcvI | CACGTG | 1 cut(s) | 77 |
| AfaI | GTAC | 1 cut(s) | 302 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 237, 523, 526 |
| AflIII | ACRYGT | 1 cut(s) | 439 |
| AgsI | TTSAA | 5 cut(s) | 114, 182, 336, 420, 547 |
| AluBI | AGCT | 4 cut(s) | 7, 56, 190, 344 |
| AluI | AGCT | 4 cut(s) | 7, 56, 190, 344 |
| Alw21I | GWGCWC | 1 cut(s) | 412 |
| Alw26I | GTCTC | 1 cut(s) | 200 |
| Alw44I | GTGCAC | 1 cut(s) | 408 |
| AlwI | GGATC | 2 cut(s) | 281, 294 |
| Aor13HI | TCCGGA | 1 cut(s) | 289 |
| ApaLI | GTGCAC | 1 cut(s) | 408 |
| ApeKI | GCWGC | 3 cut(s) | 49, 80, 83 |
| AspLEI | GCGC | 1 cut(s) | 509 |
| AspS9I | GGNCC | 2 cut(s) | 228, 368 |
| AsuHPI | GGTGA | 1 cut(s) | 284 |
| AvaII | GGWCC | 2 cut(s) | 228, 368 |
| BaeGI | GKGCMC | 1 cut(s) | 412 |
| BamHI | GGATCC | 1 cut(s) | 286 |
| BbrPI | CACGTG | 1 cut(s) | 77 |
| Bbv12I | GWGCWC | 1 cut(s) | 412 |
| BbvI | GCAGC | 3 cut(s) | 61, 67, 70 |
| BccI | CCATC | 1 cut(s) | 422 |
| BceAI | ACGGC | 1 cut(s) | 520 |
| BcoDI | GTCTC | 1 cut(s) | 200 |
| BfaI | CTAG | 1 cut(s) | 128 |
| BfuAI | ACCTGC | 1 cut(s) | 260 |
| BisI | GCNGC | 4 cut(s) | 50, 81, 84, 528 |
| BlsI | GCNGC | 4 cut(s) | 51, 82, 85, 529 |
| Bme18I | GGWCC | 2 cut(s) | 228, 368 |
| BmgT120I | GGNCC | 2 cut(s) | 228, 368 |
| BmiI | GGNNCC | 1 cut(s) | 288 |
| BmsI | GCATC | 3 cut(s) | 36, 337, 526 |
| BsaAI | YACGTR | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 1 cut(s) | 502 |
| BsaWI | WCCGGW | 2 cut(s) | 211, 289 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 237, 523, 526 |
| BseAI | TCCGGA | 1 cut(s) | 289 |
| BseDI | CCNNGG | 1 cut(s) | 502 |
| BseGI | GGATG | 2 cut(s) | 220, 433 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 237, 523, 526 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BseSI | GKGCMC | 1 cut(s) | 412 |
| BseXI | GCAGC | 3 cut(s) | 61, 67, 70 |
| Bsh1236I | CGCG | 1 cut(s) | 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 412 |
| BsiSI | CCGG | 2 cut(s) | 212, 290 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 237, 523, 526 |
| BsmAI | GTCTC | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 412 |
| Bsp13I | TCCGGA | 1 cut(s) | 289 |
| Bsp1407I | TGTACA | 1 cut(s) | 300 |
| Bsp143I | GATC | 3 cut(s) | 23, 286, 481 |
| BspACI | CCGC | 2 cut(s) | 377, 527 |
| BspEI | TCCGGA | 1 cut(s) | 289 |
| BspFNI | CGCG | 1 cut(s) | 379 |
| BspLI | GGNNCC | 1 cut(s) | 288 |
| BspMI | ACCTGC | 1 cut(s) | 260 |
| BspPI | GGATC | 2 cut(s) | 281, 294 |
| BspQI | GCTCTTC | 1 cut(s) | 180 |
| BsrGI | TGTACA | 1 cut(s) | 300 |
| BssECI | CCNNGG | 1 cut(s) | 502 |
| BssMI | GATC | 3 cut(s) | 23, 286, 481 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstAUI | TGTACA | 1 cut(s) | 300 |
| BstBAI | YACGTR | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 555 |
| BstDSI | CCRYGG | 1 cut(s) | 502 |
| BstF5I | GGATG | 2 cut(s) | 220, 433 |
| BstFNI | CGCG | 1 cut(s) | 379 |
| BstHHI | GCGC | 1 cut(s) | 509 |
| BstKTI | GATC | 3 cut(s) | 26, 289, 484 |
| BstMAI | GTCTC | 1 cut(s) | 200 |
| BstMBI | GATC | 3 cut(s) | 23, 286, 481 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 536 |
| BstNSI | RCATGY | 1 cut(s) | 177 |
| BstSLI | GKGCMC | 1 cut(s) | 412 |
| BstUI | CGCG | 1 cut(s) | 379 |
| BstV1I | GCAGC | 3 cut(s) | 61, 67, 70 |
| BstX2I | RGATCY | 1 cut(s) | 286 |
| BstYI | RGATCY | 1 cut(s) | 286 |
| BtgI | CCRYGG | 1 cut(s) | 502 |
| BtsCI | GGATG | 2 cut(s) | 220, 433 |
| BveI | ACCTGC | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 509 |
| Cfr13I | GGNCC | 2 cut(s) | 228, 368 |
| Csp6I | GTAC | 1 cut(s) | 301 |
| CviAII | CATG | 2 cut(s) | 174, 330 |
| CviJI | RGCY | 8 cut(s) | 7, 56, 127, 190, 241, 344, 397, 530 |
| CviKI_1 | RGCY | 8 cut(s) | 7, 56, 127, 190, 241, 344, 397, 530 |
| CviQI | GTAC | 1 cut(s) | 301 |
| DdeI | CTNAG | 1 cut(s) | 555 |
| DpnI | GATC | 3 cut(s) | 25, 288, 483 |
| DpnII | GATC | 3 cut(s) | 23, 286, 481 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco47I | GGWCC | 2 cut(s) | 228, 368 |
| Eco72I | CACGTG | 1 cut(s) | 77 |
| FaeI | CATG | 2 cut(s) | 177, 333 |
| FaiI | YATR | 5 cut(s) | 107, 175, 252, 331, 464 |
| FatI | CATG | 2 cut(s) | 173, 329 |
| FauI | CCCGC | 1 cut(s) | 384 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 81, 84, 528 |
| FokI | GGATG | 2 cut(s) | 227, 440 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 81, 84, 528 |
| FspBI | CTAG | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 508 |
| GluI | GCNGC | 4 cut(s) | 50, 81, 84, 528 |
| HapII | CCGG | 2 cut(s) | 212, 290 |
| HhaI | GCGC | 1 cut(s) | 509 |
| Hin1II | CATG | 2 cut(s) | 177, 333 |
| Hin6I | GCGC | 1 cut(s) | 507 |
| HinP1I | GCGC | 1 cut(s) | 507 |
| HinfI | GANTC | 2 cut(s) | 59, 110 |
| HpaII | CCGG | 2 cut(s) | 212, 290 |
| HphI | GGTGA | 1 cut(s) | 284 |
| Hpy166II | GTNNAC | 3 cut(s) | 71, 301, 410 |
| Hpy188I | TCNGA | 2 cut(s) | 435, 481 |
| Hpy188III | TCNNGA | 5 cut(s) | 144, 179, 290, 371, 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 71, 301, 410 |
| HpyAV | CCTTC | 1 cut(s) | 426 |
| HpyCH4IV | ACGT | 2 cut(s) | 76, 441 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 173, 356, 410 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 536 |
| HpyF3I | CTNAG | 1 cut(s) | 555 |
| HpySE526I | ACGT | 2 cut(s) | 76, 441 |
| Hsp92II | CATG | 2 cut(s) | 177, 333 |
| HspAI | GCGC | 1 cut(s) | 507 |
| Kpn2I | TCCGGA | 1 cut(s) | 289 |
| Kzo9I | GATC | 3 cut(s) | 23, 286, 481 |
| LguI | GCTCTTC | 1 cut(s) | 180 |
| LpnPI | CCDG | 8 cut(s) | 111, 157, 225, 255, 303, 384, 479, 525 |
| Lsp1109I | GCAGC | 3 cut(s) | 61, 67, 70 |
| LweI | GCATC | 3 cut(s) | 36, 337, 526 |
| MaeI | CTAG | 1 cut(s) | 128 |
| MaeII | ACGT | 2 cut(s) | 76, 441 |
| MaeIII | GTNAC | 1 cut(s) | 454 |
| MalI | GATC | 3 cut(s) | 25, 288, 483 |
| MboI | GATC | 3 cut(s) | 23, 286, 481 |
| MboII | GAAGA | 7 cut(s) | 194, 197, 271, 287, 320, 323, 326 |
| MflI | RGATCY | 1 cut(s) | 286 |
| MhlI | GDGCHC | 1 cut(s) | 412 |
| MnlI | CCTC | 5 cut(s) | 98, 101, 277, 374, 386 |
| MroI | TCCGGA | 1 cut(s) | 289 |
| MslI | CAYNNNNRTG | 1 cut(s) | 328 |
| MspI | CCGG | 2 cut(s) | 212, 290 |
| MvnI | CGCG | 1 cut(s) | 379 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 536 |
| NdeII | GATC | 3 cut(s) | 23, 286, 481 |
| NlaIII | CATG | 2 cut(s) | 177, 333 |
| NlaIV | GGNNCC | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 454 |
| NspI | RCATGY | 1 cut(s) | 177 |
| PaqCI | CACCTGC | 1 cut(s) | 260 |
| PciSI | GCTCTTC | 1 cut(s) | 180 |
| PfeI | GAWTC | 2 cut(s) | 59, 110 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PkrI | GCNGC | 4 cut(s) | 51, 82, 85, 529 |
| PmaCI | CACGTG | 1 cut(s) | 77 |
| PmlI | CACGTG | 1 cut(s) | 77 |
| Ppu21I | YACGTR | 1 cut(s) | 77 |
| PspCI | CACGTG | 1 cut(s) | 77 |
| PspN4I | GGNNCC | 1 cut(s) | 288 |
| PspPI | GGNCC | 2 cut(s) | 228, 368 |
| PsuI | RGATCY | 1 cut(s) | 286 |
| RsaI | GTAC | 1 cut(s) | 302 |
| RsaNI | GTAC | 1 cut(s) | 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 328 |
| SapI | GCTCTTC | 1 cut(s) | 180 |
| SatI | GCNGC | 4 cut(s) | 50, 81, 84, 528 |
| Sau3AI | GATC | 3 cut(s) | 23, 286, 481 |
| Sau96I | GGNCC | 2 cut(s) | 228, 368 |
| SduI | GDGCHC | 1 cut(s) | 412 |
| SfaNI | GCATC | 3 cut(s) | 36, 337, 526 |
| SinI | GGWCC | 2 cut(s) | 228, 368 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 328 |
| SsiI | CCGC | 2 cut(s) | 377, 527 |
| SspI | AATATT | 1 cut(s) | 235 |
| SspMI | CTAG | 1 cut(s) | 128 |
| TaiI | ACGT | 2 cut(s) | 79, 444 |
| TatI | WGTACW | 1 cut(s) | 300 |
| TauI | GCSGC | 1 cut(s) | 530 |
| TfiI | GAWTC | 2 cut(s) | 59, 110 |
| TseFI | GTSAC | 1 cut(s) | 454 |
| TseI | GCWGC | 3 cut(s) | 49, 80, 83 |
| Tsp45I | GTSAC | 1 cut(s) | 454 |
| TspDTI | ATGAA | 4 cut(s) | 17, 50, 231, 267 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| VneI | GTGCAC | 1 cut(s) | 408 |
| VpaK11BI | GGWCC | 2 cut(s) | 228, 368 |
| XceI | RCATGY | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 128 |