RLG00000018019

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000089
Physical Location & Seq
Reverse (-)
24489084 .. 24490426
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018019

Sequence Viewer

Length: 921 bp
ATGCAGGGAAAAGCTGCACGAGCAGCTCAAGTGGTTGCAGCGAGGGAAAAAAGGAATGAACCATTGAGAATATCTAATGGAAGTTCAAATTCACCCCCTATAGAAGCTGATATTCCGGAAGATCAAGTTGAATTCAATGAAAGAGGCCAGCCCATTGGAGAAAATGCAGGTTTATTCTCCTCTTTCATTGGAGCCTCCGCAAGAGAGCTAATACCTATGACCGCTGCAACTTGGAAAGGGCTATCTGATACTTTCAAAGATCAGATTTGGAAACATGTCACATCAAGTTTCATTGTTGATGAATTCTACAAAAAGCATATTTTTCGAAGGATGACAAAGCTTTGGCGAGATAATAGATCTTTAGTGATGAAAGAAGTGGAAGAGCAAGCTAAAGTTGTTGGCTTACAACGTGCTGCTGCCCTTCTCAAGCCTAATATCATAGAATCCATGGATGAGTGGCTAGCTCTTATTAAATACAGAACTAGTGTGGAATTTAAGGAGAAGTGTGAAAAATTCAAGAGAATGCGGGCAGGCAGAACTTTACTACACAGAACTACTAGAAAAAGCTTTGCGCGGCTTGTAGAAAAAAAACAATTGTCCACTCAAGCAAATGCTTTGTCCGCTCAAGCACAGAATATGCTTTCTCAATCACAAGAGATTGAACGATTGAAAGAAGTGGTTGCGACTCTTTTAGCAAGATCAGAGAAAGAAGGGAATAACCATGCTAGTAACAGTGTTCAGCAGTCTGCTAATGAGTTTGCACAACAAAAGGAGAATGAAAATCCAAGTGTTCGACATCATAGGAGTGATGGAATACAAAGCGGACAAAATGTTACTAGTGTTCGAGATACTGAAAATGGGAGGCCACAAAGCAACCACAAGAAAACTTCAAGTATTCAACATTCTGCTAAATTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

307

Amino Acids

34.65

Weight (kDa)

9.78

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 574
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 6 cut(s) 198, 222, 526, 574, 621, 822
AcsI RAATTY 6 cut(s) 88, 131, 302, 491, 512, 911
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 9 cut(s) 87, 131, 136, 256, 517, 662, 670, 891, 899
AhlI ACTAGT 2 cut(s) 482, 836
AluBI AGCT 8 cut(s) 14, 26, 107, 208, 340, 389, 464, 567
AluI AGCT 8 cut(s) 14, 26, 107, 208, 340, 389, 464, 567
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 145, 863
ApeKI GCWGC 6 cut(s) 14, 23, 38, 224, 413, 416
ApoI RAATTY 6 cut(s) 88, 131, 302, 491, 512, 911
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspLEI GCGC 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 325
AsuNHI GCTAGC 1 cut(s) 460
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 5 cut(s) 35, 50, 211, 400, 403
BccI CCATC 1 cut(s) 803
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcuI ACTAGT 2 cut(s) 482, 836
BfaI CTAG 5 cut(s) 461, 483, 558, 726, 837
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 356
BisI GCNGC 7 cut(s) 15, 24, 39, 225, 414, 417, 575
BlsI GCNGC 7 cut(s) 16, 25, 40, 226, 415, 418, 576
BmiI GGNNCC 1 cut(s) 193
BmtI GCTAGC 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 325
BpuEI CTTGAG 4 cut(s) 12, 410, 588, 609
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 336, 457
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 5 cut(s) 35, 50, 211, 400, 403
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 147, 865
BsiSI CCGG 1 cut(s) 116
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 2 cut(s) 147, 865
Bsp119I TTCGAA 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 4 cut(s) 121, 259, 356, 698
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 6 cut(s) 198, 222, 526, 574, 621, 822
BspANI GGCC 2 cut(s) 147, 865
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 158
BspOI GCTAGC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 375
BspT104I TTCGAA 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 623
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 121, 259, 356, 698
BssSI CACGAG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 325
BstC8I GCNNGC 5 cut(s) 149, 387, 462, 528, 532
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 336, 457
BstFNI CGCG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 4 cut(s) 124, 262, 359, 701
BstMBI GATC 4 cut(s) 121, 259, 356, 698
BstMWI GCNNNNNNNGC 3 cut(s) 20, 23, 620
BstNSI RCATGY 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 5 cut(s) 35, 50, 211, 400, 403
BstX2I RGATCY 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 2 cut(s) 147, 865
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 336, 457
BtsIMutI CAGTG 1 cut(s) 739
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 5 cut(s) 149, 387, 462, 528, 532
CfoI GCGC 1 cut(s) 574
CviAII CATG 3 cut(s) 275, 448, 722
DpnI GATC 4 cut(s) 123, 261, 358, 700
DpnII GATC 4 cut(s) 121, 259, 356, 698
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 447
EcoRI GAATTC 2 cut(s) 131, 302
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 3 cut(s) 278, 451, 725
FaiI YATR 9 cut(s) 101, 218, 276, 318, 440, 449, 638, 723, 801
FatI CATG 3 cut(s) 274, 447, 721
FauI CCCGC 1 cut(s) 519
Fnu4HI GCNGC 7 cut(s) 15, 24, 39, 225, 414, 417, 575
FokI GGATG 2 cut(s) 343, 464
Fsp4HI GCNGC 7 cut(s) 15, 24, 39, 225, 414, 417, 575
FspBI CTAG 5 cut(s) 461, 483, 558, 726, 837
GlaI GCGC 1 cut(s) 573
GluI GCNGC 7 cut(s) 15, 24, 39, 225, 414, 417, 575
HaeIII GGCC 2 cut(s) 147, 865
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 574
Hin1II CATG 3 cut(s) 278, 451, 725
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HindIII AAGCTT 2 cut(s) 338, 565
HinfI GANTC 2 cut(s) 443, 685
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 3 cut(s) 247, 264, 703
Hpy188III TCNNGA 3 cut(s) 116, 517, 845
Hpy8I GTNNAC 1 cut(s) 600
HpyAV CCTTC 3 cut(s) 321, 431, 704
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 6 cut(s) 4, 17, 38, 167, 227, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 23, 620
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 3 cut(s) 278, 451, 725
HspAI GCGC 1 cut(s) 572
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 121, 259, 356, 698
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 129, 153, 161, 516
Lsp1109I GCAGC 5 cut(s) 35, 50, 211, 400, 403
MaeI CTAG 5 cut(s) 461, 483, 558, 726, 837
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 3 cut(s) 277, 728, 832
MalI GATC 4 cut(s) 123, 261, 358, 700
MbiI CCGCTC 1 cut(s) 623
MboI GATC 4 cut(s) 121, 259, 356, 698
MboII GAAGA 2 cut(s) 131, 392
MfeI CAATTG 1 cut(s) 593
MflI RGATCY 1 cut(s) 356
MluCI AATT 7 cut(s) 88, 131, 302, 491, 512, 593, 911
MlyI GAGTC 1 cut(s) 679
MnlI CCTC 5 cut(s) 36, 137, 190, 205, 855
MroI TCCGGA 1 cut(s) 115
MseI TTAA 2 cut(s) 471, 495
MslI CAYNNNNRTG 1 cut(s) 804
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 528
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 20, 23, 620
NcoI CCATGG 1 cut(s) 447
NdeII GATC 4 cut(s) 121, 259, 356, 698
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 3 cut(s) 278, 451, 725
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 325
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 7 cut(s) 16, 25, 40, 226, 415, 418, 576
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PscI ACATGT 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 471, 495
SatI GCNGC 7 cut(s) 15, 24, 39, 225, 414, 417, 575
Sau3AI GATC 4 cut(s) 121, 259, 356, 698
SchI GAGTC 1 cut(s) 679
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 804
SmlI CTYRAG 4 cut(s) 27, 425, 603, 624
SmoI CTYRAG 4 cut(s) 27, 425, 603, 624
SpeI ACTAGT 2 cut(s) 482, 836
Sse9I AATT 7 cut(s) 88, 131, 302, 491, 512, 593, 911
SsiI CCGC 6 cut(s) 198, 222, 526, 574, 621, 822
SspMI CTAG 5 cut(s) 461, 483, 558, 726, 837
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 325, 793, 844
TasI AATT 7 cut(s) 88, 131, 302, 491, 512, 593, 911
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 471, 495
Tru9I TTAA 2 cut(s) 471, 495
TscAI CASTG 1 cut(s) 739
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 6 cut(s) 14, 23, 38, 224, 413, 416
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 7 cut(s) 72, 153, 175, 280, 315, 383, 792
TspRI CASTG 1 cut(s) 739
XapI RAATTY 6 cut(s) 88, 131, 302, 491, 512, 911
XceI RCATGY 1 cut(s) 278
XspI CTAG 5 cut(s) 461, 483, 558, 726, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.