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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 97 |
| AclI | AACGTT | 1 cut(s) | 622 |
| AclWI | GGATC | 1 cut(s) | 44 |
| AcsI | RAATTY | 3 cut(s) | 283, 295, 443 |
| AcuI | CTGAAG | 3 cut(s) | 101, 309, 366 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 383 |
| AgsI | TTSAA | 4 cut(s) | 104, 443, 448, 568 |
| AjnI | CCWGG | 2 cut(s) | 435, 542 |
| AluBI | AGCT | 5 cut(s) | 254, 344, 356, 482, 520 |
| AluI | AGCT | 5 cut(s) | 254, 344, 356, 482, 520 |
| Alw26I | GTCTC | 1 cut(s) | 315 |
| AlwI | GGATC | 1 cut(s) | 44 |
| AoxI | GGCC | 1 cut(s) | 457 |
| ApeKI | GCWGC | 1 cut(s) | 479 |
| ApoI | RAATTY | 3 cut(s) | 283, 295, 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 1 cut(s) | 362 |
| BbvI | GCAGC | 1 cut(s) | 491 |
| BciT130I | CCWGG | 2 cut(s) | 437, 544 |
| BcoDI | GTCTC | 1 cut(s) | 315 |
| BfaI | CTAG | 3 cut(s) | 122, 255, 381 |
| BfmI | CTRYAG | 3 cut(s) | 39, 357, 477 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 1 cut(s) | 480 |
| BlsI | GCNGC | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 2 cut(s) | 437, 544 |
| BmrFI | CCNGG | 2 cut(s) | 437, 544 |
| BmsI | GCATC | 2 cut(s) | 316, 494 |
| BpmI | CTGGAG | 1 cut(s) | 201 |
| Bsa29I | ATCGAT | 1 cut(s) | 19 |
| BsaJI | CCNNGG | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 383 |
| BseBI | CCWGG | 2 cut(s) | 437, 544 |
| BseCI | ATCGAT | 1 cut(s) | 19 |
| BseDI | CCNNGG | 1 cut(s) | 53 |
| BseGI | GGATG | 1 cut(s) | 509 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BseMII | CTCAG | 1 cut(s) | 587 |
| BseRI | GAGGAG | 1 cut(s) | 481 |
| BseXI | GCAGC | 1 cut(s) | 491 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| Bsh1236I | CGCG | 1 cut(s) | 97 |
| BshFI | GGCC | 1 cut(s) | 459 |
| BshVI | ATCGAT | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 315 |
| BsmBI | CGTCTC | 1 cut(s) | 315 |
| BsnI | GGCC | 1 cut(s) | 459 |
| Bsp143I | GATC | 2 cut(s) | 49, 186 |
| Bsp19I | CCATGG | 1 cut(s) | 53 |
| BspANI | GGCC | 1 cut(s) | 459 |
| BspCNI | CTCAG | 1 cut(s) | 586 |
| BspDI | ATCGAT | 1 cut(s) | 19 |
| BspFNI | CGCG | 1 cut(s) | 97 |
| BspMAI | CTGCAG | 1 cut(s) | 481 |
| BspPI | GGATC | 1 cut(s) | 44 |
| BssECI | CCNNGG | 1 cut(s) | 53 |
| BssMI | GATC | 2 cut(s) | 49, 186 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst2UI | CCWGG | 2 cut(s) | 437, 544 |
| Bst4CI | ACNGT | 1 cut(s) | 595 |
| BstC8I | GCNNGC | 2 cut(s) | 321, 461 |
| BstDEI | CTNAG | 1 cut(s) | 573 |
| BstDSI | CCRYGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 1 cut(s) | 509 |
| BstFNI | CGCG | 1 cut(s) | 97 |
| BstKTI | GATC | 2 cut(s) | 52, 189 |
| BstMAI | GTCTC | 1 cut(s) | 315 |
| BstMBI | GATC | 2 cut(s) | 49, 186 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 265 |
| BstNI | CCWGG | 2 cut(s) | 437, 544 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSCI | CCNGG | 2 cut(s) | 435, 542 |
| BstSFI | CTRYAG | 3 cut(s) | 39, 357, 477 |
| BstUI | CGCG | 1 cut(s) | 97 |
| BstV1I | GCAGC | 1 cut(s) | 491 |
| BstX2I | RGATCY | 2 cut(s) | 49, 186 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 467 |
| BstYI | RGATCY | 2 cut(s) | 49, 186 |
| Bsu15I | ATCGAT | 1 cut(s) | 19 |
| BsuRI | GGCC | 1 cut(s) | 459 |
| BsuTUI | ATCGAT | 1 cut(s) | 19 |
| BtgI | CCRYGG | 1 cut(s) | 53 |
| BtsCI | GGATG | 1 cut(s) | 509 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| Cac8I | GCNNGC | 2 cut(s) | 321, 461 |
| ClaI | ATCGAT | 1 cut(s) | 19 |
| CseI | GACGC | 1 cut(s) | 86 |
| CviAII | CATG | 3 cut(s) | 54, 236, 277 |
| DdeI | CTNAG | 1 cut(s) | 573 |
| DpnI | GATC | 2 cut(s) | 51, 188 |
| DpnII | GATC | 2 cut(s) | 49, 186 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 3 cut(s) | 101, 309, 366 |
| EcoRI | GAATTC | 1 cut(s) | 443 |
| EcoRII | CCWGG | 2 cut(s) | 435, 542 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| Esp3I | CGTCTC | 1 cut(s) | 315 |
| FaeI | CATG | 3 cut(s) | 57, 239, 280 |
| FatI | CATG | 3 cut(s) | 53, 235, 276 |
| FauNDI | CATATG | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 1 cut(s) | 480 |
| FokI | GGATG | 1 cut(s) | 516 |
| Fsp4HI | GCNGC | 1 cut(s) | 480 |
| FspBI | CTAG | 3 cut(s) | 122, 255, 381 |
| GluI | GCNGC | 1 cut(s) | 480 |
| GsuI | CTGGAG | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 459 |
| HgaI | GACGC | 1 cut(s) | 86 |
| Hin1II | CATG | 3 cut(s) | 57, 239, 280 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HphI | GGTGA | 1 cut(s) | 362 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 645 |
| Hpy188I | TCNGA | 3 cut(s) | 289, 559, 576 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 122, 180 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 645 |
| HpyAV | CCTTC | 3 cut(s) | 128, 186, 341 |
| HpyCH4III | ACNGT | 1 cut(s) | 595 |
| HpyCH4IV | ACGT | 2 cut(s) | 427, 622 |
| HpyCH4V | TGCA | 9 cut(s) | 67, 203, 220, 233, 239, 329, 479, 507, 536 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 265 |
| HpyF3I | CTNAG | 1 cut(s) | 573 |
| HpySE526I | ACGT | 2 cut(s) | 427, 622 |
| Hsp92II | CATG | 3 cut(s) | 57, 239, 280 |
| Kzo9I | GATC | 2 cut(s) | 49, 186 |
| LpnPI | CCDG | 8 cut(s) | 55, 165, 333, 422, 449, 473, 529, 556 |
| Lsp1109I | GCAGC | 1 cut(s) | 491 |
| LweI | GCATC | 2 cut(s) | 316, 494 |
| MaeI | CTAG | 3 cut(s) | 122, 255, 381 |
| MaeII | ACGT | 2 cut(s) | 427, 622 |
| MaeIII | GTNAC | 1 cut(s) | 623 |
| MalI | GATC | 2 cut(s) | 51, 188 |
| MboI | GATC | 2 cut(s) | 49, 186 |
| MboII | GAAGA | 4 cut(s) | 86, 116, 137, 297 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MflI | RGATCY | 2 cut(s) | 49, 186 |
| MluCI | AATT | 5 cut(s) | 283, 295, 395, 443, 465 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 3 cut(s) | 377, 449, 502 |
| MroXI | GAANNNNTTC | 1 cut(s) | 117 |
| MspA1I | CMGCKG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 2 cut(s) | 437, 544 |
| MunI | CAATTG | 1 cut(s) | 465 |
| MvaI | CCWGG | 2 cut(s) | 437, 544 |
| MvnI | CGCG | 1 cut(s) | 97 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 265 |
| NcoI | CCATGG | 1 cut(s) | 53 |
| NdeI | CATATG | 1 cut(s) | 135 |
| NdeII | GATC | 2 cut(s) | 49, 186 |
| NlaIII | CATG | 3 cut(s) | 57, 239, 280 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PdmI | GAANNNNTTC | 1 cut(s) | 117 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 481 |
| Psp1406I | AACGTT | 1 cut(s) | 622 |
| Psp6I | CCWGG | 2 cut(s) | 435, 542 |
| PspGI | CCWGG | 2 cut(s) | 435, 542 |
| PstI | CTGCAG | 1 cut(s) | 481 |
| PsuI | RGATCY | 2 cut(s) | 49, 186 |
| PvuII | CAGCTG | 1 cut(s) | 344 |
| SatI | GCNGC | 1 cut(s) | 480 |
| Sau3AI | GATC | 2 cut(s) | 49, 186 |
| ScrFI | CCNGG | 2 cut(s) | 437, 544 |
| SfaNI | GCATC | 2 cut(s) | 316, 494 |
| SfcI | CTRYAG | 3 cut(s) | 39, 357, 477 |
| Sse9I | AATT | 5 cut(s) | 283, 295, 395, 443, 465 |
| SspMI | CTAG | 3 cut(s) | 122, 255, 381 |
| StyD4I | CCNGG | 2 cut(s) | 435, 542 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 595 |
| TaiI | ACGT | 2 cut(s) | 430, 625 |
| TaqI | TCGA | 1 cut(s) | 19 |
| TasI | AATT | 5 cut(s) | 283, 295, 395, 443, 465 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseI | GCWGC | 1 cut(s) | 479 |
| TspDTI | ATGAA | 3 cut(s) | 126, 465, 668 |
| TspRI | CASTG | 1 cut(s) | 154 |
| XapI | RAATTY | 3 cut(s) | 283, 295, 443 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XmnI | GAANNNNTTC | 1 cut(s) | 117 |
| XspI | CTAG | 3 cut(s) | 122, 255, 381 |