DNA-directed 5'-3' RNA polymerase activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 413 |
| AfaI | GTAC | 2 cut(s) | 553, 575 |
| AgsI | TTSAA | 5 cut(s) | 26, 34, 158, 264, 272 |
| AluBI | AGCT | 1 cut(s) | 500 |
| AluI | AGCT | 1 cut(s) | 500 |
| AlwI | GGATC | 1 cut(s) | 413 |
| AoxI | GGCC | 2 cut(s) | 227, 563 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 395, 427 |
| AspS9I | GGNCC | 1 cut(s) | 321 |
| AsuHPI | GGTGA | 1 cut(s) | 296 |
| AvaII | GGWCC | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 1 cut(s) | 447 |
| BccI | CCATC | 4 cut(s) | 167, 281, 370, 444 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BfaI | CTAG | 3 cut(s) | 201, 407, 516 |
| Bme18I | GGWCC | 1 cut(s) | 321 |
| BmgT120I | GGNCC | 1 cut(s) | 321 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 526, 558 |
| BpuEI | CTTGAG | 1 cut(s) | 528 |
| BsaJI | CCNNGG | 1 cut(s) | 448 |
| BseDI | CCNNGG | 1 cut(s) | 448 |
| BseGI | GGATG | 1 cut(s) | 343 |
| BseMII | CTCAG | 1 cut(s) | 524 |
| BseSI | GKGCMC | 1 cut(s) | 447 |
| BshFI | GGCC | 2 cut(s) | 229, 565 |
| BsmI | GAATGC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 229, 565 |
| Bsp1286I | GDGCHC | 1 cut(s) | 447 |
| Bsp143I | GATC | 3 cut(s) | 62, 340, 418 |
| BspANI | GGCC | 2 cut(s) | 229, 565 |
| BspCNI | CTCAG | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 454 |
| BspPI | GGATC | 1 cut(s) | 413 |
| BssECI | CCNNGG | 1 cut(s) | 448 |
| BssMI | GATC | 3 cut(s) | 62, 340, 418 |
| BssT1I | CCWWGG | 1 cut(s) | 448 |
| Bst4CI | ACNGT | 2 cut(s) | 98, 556 |
| BstDEI | CTNAG | 1 cut(s) | 533 |
| BstF5I | GGATG | 1 cut(s) | 343 |
| BstKTI | GATC | 3 cut(s) | 65, 343, 421 |
| BstMBI | GATC | 3 cut(s) | 62, 340, 418 |
| BstSLI | GKGCMC | 1 cut(s) | 447 |
| BstX2I | RGATCY | 1 cut(s) | 418 |
| BstYI | RGATCY | 1 cut(s) | 418 |
| BsuRI | GGCC | 2 cut(s) | 229, 565 |
| BtsCI | GGATG | 1 cut(s) | 343 |
| BtsI | GCAGTG | 1 cut(s) | 175 |
| BtsIMutI | CAGTG | 3 cut(s) | 103, 175, 530 |
| CciI | TCATGA | 1 cut(s) | 454 |
| Cfr13I | GGNCC | 1 cut(s) | 321 |
| Csp6I | GTAC | 2 cut(s) | 552, 574 |
| CviAII | CATG | 4 cut(s) | 86, 440, 455, 561 |
| CviJI | RGCY | 4 cut(s) | 229, 500, 542, 565 |
| CviKI_1 | RGCY | 4 cut(s) | 229, 500, 542, 565 |
| CviQI | GTAC | 2 cut(s) | 552, 574 |
| DdeI | CTNAG | 1 cut(s) | 533 |
| DpnI | GATC | 3 cut(s) | 64, 342, 420 |
| DpnII | GATC | 3 cut(s) | 62, 340, 418 |
| Eco130I | CCWWGG | 1 cut(s) | 448 |
| Eco47I | GGWCC | 1 cut(s) | 321 |
| EcoT14I | CCWWGG | 1 cut(s) | 448 |
| ErhI | CCWWGG | 1 cut(s) | 448 |
| FaeI | CATG | 4 cut(s) | 89, 443, 458, 564 |
| FaiI | YATR | 8 cut(s) | 87, 165, 441, 456, 497, 505, 539, 562 |
| FatI | CATG | 4 cut(s) | 85, 439, 454, 560 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| FokI | GGATG | 1 cut(s) | 350 |
| FspBI | CTAG | 3 cut(s) | 201, 407, 516 |
| HaeIII | GGCC | 2 cut(s) | 229, 565 |
| Hin1II | CATG | 4 cut(s) | 89, 443, 458, 564 |
| HinfI | GANTC | 3 cut(s) | 107, 351, 410 |
| HphI | GGTGA | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 217, 345 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 455 |
| HpyAV | CCTTC | 1 cut(s) | 305 |
| HpyCH4III | ACNGT | 2 cut(s) | 98, 556 |
| HpyCH4V | TGCA | 4 cut(s) | 295, 395, 401, 560 |
| HpyF3I | CTNAG | 1 cut(s) | 533 |
| Hsp92II | CATG | 4 cut(s) | 89, 443, 458, 564 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| Kzo9I | GATC | 3 cut(s) | 62, 340, 418 |
| LpnPI | CCDG | 3 cut(s) | 89, 267, 448 |
| MaeI | CTAG | 3 cut(s) | 201, 407, 516 |
| MaeIII | GTNAC | 2 cut(s) | 92, 328 |
| MalI | GATC | 3 cut(s) | 64, 342, 420 |
| MboI | GATC | 3 cut(s) | 62, 340, 418 |
| MboII | GAAGA | 1 cut(s) | 392 |
| MfeI | CAATTG | 1 cut(s) | 396 |
| MflI | RGATCY | 1 cut(s) | 418 |
| MhlI | GDGCHC | 1 cut(s) | 447 |
| MluCI | AATT | 2 cut(s) | 356, 396 |
| MlyI | GAGTC | 1 cut(s) | 419 |
| MnlI | CCTC | 3 cut(s) | 203, 219, 484 |
| MseI | TTAA | 1 cut(s) | 362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 168 |
| MunI | CAATTG | 1 cut(s) | 396 |
| Mva1269I | GAATGC | 1 cut(s) | 464 |
| NdeII | GATC | 3 cut(s) | 62, 340, 418 |
| NlaIII | CATG | 4 cut(s) | 89, 443, 458, 564 |
| PagI | TCATGA | 1 cut(s) | 454 |
| PctI | GAATGC | 1 cut(s) | 464 |
| PfeI | GAWTC | 2 cut(s) | 107, 351 |
| PleI | GAGTC | 1 cut(s) | 418 |
| PpsI | GAGTC | 1 cut(s) | 418 |
| PspPI | GGNCC | 1 cut(s) | 321 |
| PsuI | RGATCY | 1 cut(s) | 418 |
| RsaI | GTAC | 2 cut(s) | 553, 575 |
| RsaNI | GTAC | 2 cut(s) | 552, 574 |
| RseI | CAYNNNNRTG | 1 cut(s) | 168 |
| SaqAI | TTAA | 1 cut(s) | 362 |
| Sau3AI | GATC | 3 cut(s) | 62, 340, 418 |
| Sau96I | GGNCC | 1 cut(s) | 321 |
| SchI | GAGTC | 1 cut(s) | 419 |
| SduI | GDGCHC | 1 cut(s) | 447 |
| SetI | ASST | 3 cut(s) | 214, 316, 502 |
| SinI | GGWCC | 1 cut(s) | 321 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 1 cut(s) | 543 |
| SmoI | CTYRAG | 1 cut(s) | 543 |
| Sse9I | AATT | 2 cut(s) | 356, 396 |
| SspI | AATATT | 1 cut(s) | 196 |
| SspMI | CTAG | 3 cut(s) | 201, 407, 516 |
| StyI | CCWWGG | 1 cut(s) | 448 |
| TaaI | ACNGT | 2 cut(s) | 98, 556 |
| TaqI | TCGA | 3 cut(s) | 208, 354, 508 |
| TasI | AATT | 2 cut(s) | 356, 396 |
| TatI | WGTACW | 2 cut(s) | 551, 573 |
| TfiI | GAWTC | 2 cut(s) | 107, 351 |
| Tru1I | TTAA | 1 cut(s) | 362 |
| Tru9I | TTAA | 1 cut(s) | 362 |
| TscAI | CASTG | 3 cut(s) | 103, 175, 537 |
| TspDTI | ATGAA | 2 cut(s) | 156, 471 |
| TspRI | CASTG | 3 cut(s) | 103, 175, 537 |
| VpaK11BI | GGWCC | 1 cut(s) | 321 |
| XspI | CTAG | 3 cut(s) | 201, 407, 516 |