Rh7CG415200

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
53460702 .. 53461647
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG415200.1

Sequence Viewer

Length: 750 bp
ATGAAAGTCTTGGTTGATATCTCAAATAAACCAGATGCTTTTCTTTGGAGGCCGACATCTAATATGTTTTGTTTTCAACATGCTCAAGGTAAAACAATAGCATGGCCTGCTGACAGAGTTATTTTTCAAATGGATCAGCAGTCTGAGGAACAAGACAATTTATCTATGCCTTCGAGTTCATACAACAACTCAAGGAACAAGTGCAAATTATTTGATTGGACTGGAAAAGATGAAGTAGTTGCAGAAGGACGTTGGCATTCAAGTGATCCAAAAGTGTTGGTAAATGGTATTCCTCTTGGACCTAATGCCATGATAGTTTGGGTAGATATTCCAAAGAATCATGAAGCATTTTTATGGAGGCCTACAATTGATATGACTTGCATTGAAGATGTCGTGAATTTTGCTATAGCATGGCCAGCTAACAAAGTTGTTTTGGAAAAGATATCAGAAAGTCAAGATGGTGAAAATGCATCCTCTCCTTCGAGTGTCAACTCCAAATCAAAGAAAAGGTGCAAGTTGTTGGATGTTAGTGGATCGGGACAAATAGTTGCTGAAGGACGTTGGTCCTCAAGTGATCCAGATCAGGTTGTTCATTTTGTTCCCTTGGGGCCTAATGCTATGAGAGTTTGGGTAGATACACCGAAAGTCCCAACTGCATCCCTTTGGAGGCCATCATCCGAGCTGGAAATTATTGAAGATGCTATTGGTACTACAATAGCATGGCCAGCAGACAAAGTGGTTTTCTTTTAG

Protein Analysis

249

Amino Acids

27.84

Weight (kDa)

5.28

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 64 - 145 9.8e-06 Domain of unknown function (DUF8039)
DUF8039 PF26133 167 - 248 7.9e-09 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 141, 260, 541, 569
AcoI YGGCCR 2 cut(s) 413, 722
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 1 cut(s) 666
AgsI TTSAA 5 cut(s) 77, 128, 261, 386, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AluBI AGCT 2 cut(s) 419, 682
AluI AGCT 2 cut(s) 419, 682
AlwI GGATC 4 cut(s) 141, 260, 541, 569
AoxI GGCC 7 cut(s) 50, 104, 359, 413, 608, 668, 722
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 3 cut(s) 299, 564, 608
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 2 cut(s) 299, 564
BalI TGGCCA 2 cut(s) 415, 724
BccI CCATC 2 cut(s) 452, 679
BfmI CTRYAG 1 cut(s) 405
Bme18I GGWCC 2 cut(s) 299, 564
BmgT120I GGNCC 3 cut(s) 299, 564, 608
BmiI GGNNCC 1 cut(s) 609
BmsI GCATC 4 cut(s) 25, 479, 665, 688
BoxI GACNNNNGTC 1 cut(s) 562
BpuEI CTTGAG 3 cut(s) 69, 175, 553
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 1 cut(s) 603
Bsc4I CCNNNNNNNGG 1 cut(s) 666
Bse1I ACTGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 4 cut(s) 470, 529, 656, 674
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 666
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 7 cut(s) 52, 106, 361, 415, 610, 670, 724
BslFI GGGAC 2 cut(s) 552, 632
BslI CCNNNNNNNGG 1 cut(s) 666
BsmFI GGGAC 2 cut(s) 552, 632
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 7 cut(s) 52, 106, 361, 415, 610, 670, 724
Bsp143I GATC 5 cut(s) 133, 265, 533, 574, 580
BspANI GGCC 7 cut(s) 52, 106, 361, 415, 610, 670, 724
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 4 cut(s) 141, 260, 541, 569
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 5 cut(s) 133, 265, 533, 574, 580
BssT1I CCWWGG 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 108, 417, 726
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 470, 529, 656, 674
BstKTI GATC 5 cut(s) 136, 268, 536, 577, 583
BstMBI GATC 5 cut(s) 133, 265, 533, 574, 580
BstMWI GCNNNNNNNGC 3 cut(s) 107, 416, 725
BstNSI RCATGY 1 cut(s) 83
BstPAI GACNNNNGTC 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 405
BsuRI GGCC 7 cut(s) 52, 106, 361, 415, 610, 670, 724
BtsCI GGATG 4 cut(s) 470, 529, 656, 674
Cac8I GCNNGC 3 cut(s) 108, 417, 726
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 299, 564, 608
Csp6I GTAC 1 cut(s) 708
CviAII CATG 6 cut(s) 80, 102, 310, 341, 411, 720
CviJI RGCY 9 cut(s) 52, 106, 361, 415, 419, 610, 670, 682, 724
CviKI_1 RGCY 9 cut(s) 52, 106, 361, 415, 419, 610, 670, 682, 724
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 1 cut(s) 144
DpnI GATC 5 cut(s) 135, 267, 535, 576, 582
DpnII GATC 5 cut(s) 133, 265, 533, 574, 580
EaeI YGGCCR 2 cut(s) 413, 722
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 361
Eco32I GATATC 2 cut(s) 19, 444
Eco47I GGWCC 2 cut(s) 299, 564
Eco57I CTGAAG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 608
EcoRV GATATC 2 cut(s) 19, 444
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 6 cut(s) 83, 105, 313, 344, 414, 723
FaqI GGGAC 2 cut(s) 552, 632
FatI CATG 6 cut(s) 79, 101, 309, 340, 410, 719
FokI GGATG 4 cut(s) 457, 536, 643, 661
HaeIII GGCC 7 cut(s) 52, 106, 361, 415, 610, 670, 724
Hin1II CATG 6 cut(s) 83, 105, 313, 344, 414, 723
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 1 cut(s) 337
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 145, 448, 679
Hpy188III TCNNGA 5 cut(s) 341, 394, 455, 537, 578
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 4 cut(s) 180, 239, 489, 548
HpyCH4IV ACGT 2 cut(s) 250, 559
HpyCH4V TGCA 6 cut(s) 204, 242, 381, 470, 513, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 416, 725
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 250, 559
Hsp92II CATG 6 cut(s) 83, 105, 313, 344, 414, 723
Kzo9I GATC 5 cut(s) 133, 265, 533, 574, 580
LpnPI CCDG 8 cut(s) 45, 120, 207, 429, 569, 591, 668, 738
LweI GCATC 4 cut(s) 25, 479, 665, 688
MaeII ACGT 2 cut(s) 250, 559
MalI GATC 5 cut(s) 135, 267, 535, 576, 582
MboI GATC 5 cut(s) 133, 265, 533, 574, 580
MboII GAAGA 2 cut(s) 398, 707
MfeI CAATTG 1 cut(s) 366
MlsI TGGCCA 2 cut(s) 415, 724
MluCI AATT 5 cut(s) 157, 206, 366, 397, 687
MluNI TGGCCA 2 cut(s) 415, 724
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 7 cut(s) 42, 139, 303, 351, 484, 577, 660
Mox20I TGGCCA 2 cut(s) 415, 724
Mph1103I ATGCAT 1 cut(s) 472
MscI TGGCCA 2 cut(s) 415, 724
MslI CAYNNNNRTG 2 cut(s) 261, 352
Msp20I TGGCCA 2 cut(s) 415, 724
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 107, 416, 725
NdeII GATC 5 cut(s) 133, 265, 533, 574, 580
NlaIII CATG 6 cut(s) 83, 105, 313, 344, 414, 723
NlaIV GGNNCC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 83
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 361
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 337
PshAI GACNNNNGTC 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 3 cut(s) 299, 564, 608
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 2 cut(s) 261, 352
Sau3AI GATC 5 cut(s) 133, 265, 533, 574, 580
Sau96I GGNCC 3 cut(s) 299, 564, 608
SetI ASST 8 cut(s) 91, 253, 304, 421, 512, 562, 588, 684
SfaNI GCATC 4 cut(s) 25, 479, 665, 688
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 2 cut(s) 299, 564
SmiMI CAYNNNNRTG 2 cut(s) 261, 352
SmlI CTYRAG 3 cut(s) 84, 190, 568
SmoI CTYRAG 3 cut(s) 84, 190, 568
Sse9I AATT 5 cut(s) 157, 206, 366, 397, 687
SseBI AGGCCT 1 cut(s) 361
StuI AGGCCT 1 cut(s) 361
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 2 cut(s) 253, 562
TaqI TCGA 2 cut(s) 173, 482
TasI AATT 5 cut(s) 157, 206, 366, 397, 687
TfiI GAWTC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 17, 168, 246, 357, 581
VpaK11BI GGWCC 2 cut(s) 299, 564
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.