Rmu_sc0002042.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002042.1
OG0000089
Physical Location & Seq
Reverse (-)
41522 .. 44336
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002042.1_g000011.1.cds

Sequence Viewer

Length: 663 bp
atgttctgggcacccacacatctttctcccttctggactgtgagaccaacagacctagcccgagctctgatgagagctttggtgctttgggtcaagcaccaacagacccgaccagagctctgtgttgtgttggacgtcaaagtccttgtgcaagtggctccattttcgatctttggctatcggagacgaaaccaacgggaaccggaattggaagcctccagtgagagatgctgtgcttctacccctatttcgacgacaaccaccatcgaacttccaacgacgtggttcttgacctggaaccagtcatactcatctcctcaacctaaatcatgtttcgacgctgaaccagagtcacaacaatcaagtggaccaatcaatgctccaaggattgatcttgaaaatagaagatgtgcacttttgaattggaacaattatgaagaagatgaagcggtggctgaagggaagatctcttcaacaaatctaagtacaaaagttcattgtgtgcctcttagacgagattattggaaggtttgggttgatgtggtgtttgatgagtatcagactatggaagtgtatagagcaaccatggatgccaaacaacttggtgaagctgtaggaaacactcttgcatggcccaaaagctccattaaaatgctcccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

220

Amino Acids

25.28

Weight (kDa)

6.33

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 10
AciI CCGC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 487
AgsI TTSAA 3 cut(s) 398, 421, 474
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 5 cut(s) 65, 77, 118, 611, 642
AluI AGCT 5 cut(s) 65, 77, 118, 611, 642
Alw21I GWGCWC 3 cut(s) 67, 120, 415
Alw26I GTCTC 2 cut(s) 37, 178
Alw44I GTGCAC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 632
ApaLI GTGCAC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 368, 633
AsuHPI GGTGA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 368
BaeGI GKGCMC 2 cut(s) 13, 415
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 67, 120
Bbv12I GWGCWC 3 cut(s) 67, 120, 415
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 37, 178
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 612
BglII AGATCT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 368
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 368, 633
BmiI GGNNCC 4 cut(s) 12, 159, 201, 299
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 2 cut(s) 218, 580
BpmI CTGGAG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 383, 585
BsaWI WCCGGW 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 219, 301
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 383, 585
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 1 cut(s) 555
BseNI ACTGG 2 cut(s) 219, 301
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 2 cut(s) 13, 415
BshFI GGCC 1 cut(s) 634
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 3 cut(s) 67, 120, 415
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 37, 178
BsmBI CGTCTC 1 cut(s) 178
BsnI GGCC 1 cut(s) 634
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 4 cut(s) 13, 67, 120, 415
Bsp143I GATC 3 cut(s) 168, 391, 465
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 1 cut(s) 449
BspANI GGCC 1 cut(s) 634
BspLI GGNNCC 4 cut(s) 12, 159, 201, 299
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 219, 301
BssECI CCNNGG 2 cut(s) 383, 585
BssMI GATC 3 cut(s) 168, 391, 465
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 383, 585
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 475
BstACI GRCGYC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 482, 509, 660
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 3 cut(s) 171, 394, 468
BstMAI GTCTC 2 cut(s) 37, 178
BstMBI GATC 3 cut(s) 168, 391, 465
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 612
BstSLI GKGCMC 2 cut(s) 13, 415
BstX2I RGATCY 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 1 cut(s) 465
BsuRI GGCC 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 368, 633
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 486
CviAII CATG 3 cut(s) 330, 586, 630
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 482, 509, 660
DpnI GATC 3 cut(s) 170, 393, 467
DpnII GATC 3 cut(s) 168, 391, 465
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
Ecl136II GAGCTC 2 cut(s) 65, 118
Eco130I CCWWGG 2 cut(s) 383, 585
Eco24I GRGCYC 2 cut(s) 67, 120
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 2 cut(s) 65, 118
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 2 cut(s) 65, 118
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 2 cut(s) 383, 585
EcoT38I GRGCYC 2 cut(s) 67, 120
ErhI CCWWGG 2 cut(s) 383, 585
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 3 cut(s) 333, 589, 633
FaiI YATR 7 cut(s) 307, 331, 435, 566, 576, 587, 631
FatI CATG 3 cut(s) 329, 585, 629
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 2 cut(s) 67, 120
FspBI CTAG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 634
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 333, 589, 633
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 2 cut(s) 368, 413
Hpy188I TCNGA 3 cut(s) 69, 183, 561
Hpy188III TCNNGA 3 cut(s) 34, 289, 395
Hpy8I GTNNAC 2 cut(s) 368, 413
Hpy99I CGWCG 3 cut(s) 256, 283, 341
HpyAV CCTTC 3 cut(s) 40, 452, 520
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 135, 281
HpyCH4V TGCA 3 cut(s) 151, 413, 629
HpyF3I CTNAG 3 cut(s) 482, 509, 660
HpySE526I ACGT 2 cut(s) 135, 281
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 333, 589, 633
Kzo9I GATC 3 cut(s) 168, 391, 465
LmnI GCTCC 4 cut(s) 163, 385, 647, 660
LpnPI CCDG 8 cut(s) 19, 126, 216, 232, 280, 307, 314, 360
LweI GCATC 2 cut(s) 218, 580
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 135, 281
MaeIII GTNAC 1 cut(s) 351
MalI GATC 3 cut(s) 170, 393, 467
MboI GATC 3 cut(s) 168, 391, 465
MboII GAAGA 5 cut(s) 417, 449, 452, 462, 475
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 4 cut(s) 13, 67, 120, 415
MluCI AATT 3 cut(s) 206, 421, 430
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 111, 299
MnlI CCTC 3 cut(s) 226, 327, 516
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 295
MvaI CCWGG 1 cut(s) 295
NcoI CCATGG 1 cut(s) 585
NdeII GATC 3 cut(s) 168, 391, 465
NlaIII CATG 3 cut(s) 333, 589, 633
NlaIV GGNNCC 4 cut(s) 12, 159, 201, 299
NmuCI GTSAC 1 cut(s) 351
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 2 cut(s) 67, 120
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 4 cut(s) 12, 159, 201, 299
PspPI GGNCC 2 cut(s) 368, 633
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 2 cut(s) 67, 120
SaqAI TTAA 1 cut(s) 648
Sau3AI GATC 3 cut(s) 168, 391, 465
Sau96I GGNCC 2 cut(s) 368, 633
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 4 cut(s) 13, 67, 120, 415
SfaNI GCATC 2 cut(s) 218, 580
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 3 cut(s) 206, 421, 430
SsiI CCGC 1 cut(s) 449
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 2 cut(s) 67, 120
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 2 cut(s) 383, 585
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 2 cut(s) 138, 284
TaqI TCGA 4 cut(s) 167, 251, 267, 336
TasI AATT 3 cut(s) 206, 421, 430
TatI WGTACW 1 cut(s) 485
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 3 cut(s) 450, 459, 485
TspRI CASTG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 368
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.