DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 91 | 8.1e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 6 cut(s) | 118, 131, 141, 327, 340, 375 |
| AcsI | RAATTY | 1 cut(s) | 442 |
| AfaI | GTAC | 1 cut(s) | 487 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 329, 580 |
| AflIII | ACRYGT | 1 cut(s) | 214 |
| AgsI | TTSAA | 2 cut(s) | 472, 556 |
| AhlI | ACTAGT | 2 cut(s) | 314, 359 |
| AjnI | CCWGG | 2 cut(s) | 92, 545 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 304, 336 |
| AluBI | AGCT | 2 cut(s) | 7, 199 |
| AluI | AGCT | 2 cut(s) | 7, 199 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 6 cut(s) | 118, 131, 141, 327, 340, 375 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| ApeKI | GCWGC | 2 cut(s) | 50, 293 |
| ApoI | RAATTY | 1 cut(s) | 442 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 332, 364 |
| AseI | ATTAAT | 1 cut(s) | 387 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 316, 429, 560 |
| AspLEI | GCGC | 1 cut(s) | 162 |
| AspS9I | GGNCC | 1 cut(s) | 354 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 2 cut(s) | 535, 595 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BamHI | GGATCC | 2 cut(s) | 123, 332 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BauI | CACGAG | 1 cut(s) | 182 |
| BbvI | GCAGC | 2 cut(s) | 62, 280 |
| BccI | CCATC | 2 cut(s) | 26, 368 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BciT130I | CCWGG | 2 cut(s) | 94, 547 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BcuI | ACTAGT | 2 cut(s) | 314, 359 |
| BfaI | CTAG | 2 cut(s) | 315, 360 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BfoI | RGCGCY | 1 cut(s) | 163 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 2 cut(s) | 51, 294 |
| BlsI | GCNGC | 2 cut(s) | 52, 295 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 94, 547 |
| Bme18I | GGWCC | 1 cut(s) | 354 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 354 |
| BmiI | GGNNCC | 6 cut(s) | 102, 125, 245, 334, 355, 403 |
| BmrFI | CCNGG | 3 cut(s) | 55, 94, 547 |
| BpmI | CTGGAG | 2 cut(s) | 93, 179 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 282 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 304, 334 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 329, 580 |
| Bse1I | ACTGG | 3 cut(s) | 205, 421, 483 |
| BseBI | CCWGG | 2 cut(s) | 94, 547 |
| BseDI | CCNNGG | 1 cut(s) | 306 |
| BseGI | GGATG | 2 cut(s) | 37, 517 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 329, 580 |
| BseNI | ACTGG | 3 cut(s) | 205, 421, 483 |
| BseRI | GAGGAG | 2 cut(s) | 548, 551 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 2 cut(s) | 62, 280 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 329, 580 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 2 cut(s) | 262, 306 |
| Bsp143I | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| Bsp19I | CCATGG | 1 cut(s) | 306 |
| BspHI | TCATGA | 1 cut(s) | 602 |
| BspLI | GGNNCC | 6 cut(s) | 102, 125, 245, 334, 355, 403 |
| BspPI | GGATC | 6 cut(s) | 118, 131, 141, 327, 340, 375 |
| BsrI | ACTGG | 3 cut(s) | 205, 421, 483 |
| BssECI | CCNNGG | 1 cut(s) | 306 |
| BssMI | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 547 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstF5I | GGATG | 2 cut(s) | 37, 517 |
| BstH2I | RGCGCY | 1 cut(s) | 163 |
| BstHHI | GCGC | 1 cut(s) | 162 |
| BstKTI | GATC | 7 cut(s) | 115, 126, 136, 189, 335, 383, 543 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| BstNI | CCWGG | 2 cut(s) | 94, 547 |
| BstNSI | RCATGY | 1 cut(s) | 218 |
| BstSCI | CCNGG | 3 cut(s) | 53, 92, 545 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstV1I | GCAGC | 2 cut(s) | 62, 280 |
| BstX2I | RGATCY | 5 cut(s) | 123, 133, 186, 332, 380 |
| BstYI | RGATCY | 5 cut(s) | 123, 133, 186, 332, 380 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtsCI | GGATG | 2 cut(s) | 37, 517 |
| CciI | TCATGA | 1 cut(s) | 602 |
| CfoI | GCGC | 1 cut(s) | 162 |
| Cfr13I | GGNCC | 1 cut(s) | 354 |
| Csp6I | GTAC | 1 cut(s) | 486 |
| CviAII | CATG | 5 cut(s) | 215, 307, 576, 580, 603 |
| CviJI | RGCY | 6 cut(s) | 7, 53, 87, 199, 260, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 53, 87, 199, 260, 293 |
| CviQI | GTAC | 1 cut(s) | 486 |
| DpnI | GATC | 7 cut(s) | 114, 125, 135, 188, 334, 382, 542 |
| DpnII | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| DraI | TTTAAA | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 1 cut(s) | 354 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 2 cut(s) | 92, 545 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| EcoT22I | ATGCAT | 1 cut(s) | 581 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaeI | CATG | 5 cut(s) | 218, 310, 579, 583, 606 |
| FaiI | YATR | 8 cut(s) | 177, 210, 216, 308, 454, 577, 581, 604 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 417, 449 |
| FatI | CATG | 5 cut(s) | 214, 306, 575, 579, 602 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 294 |
| FokI | GGATG | 2 cut(s) | 44, 504 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 294 |
| FspBI | CTAG | 2 cut(s) | 315, 360 |
| GlaI | GCGC | 1 cut(s) | 161 |
| GluI | GCNGC | 2 cut(s) | 51, 294 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 2 cut(s) | 93, 179 |
| HaeII | RGCGCY | 1 cut(s) | 163 |
| HapII | CCGG | 1 cut(s) | 54 |
| HhaI | GCGC | 1 cut(s) | 162 |
| Hin1II | CATG | 5 cut(s) | 218, 310, 579, 583, 606 |
| Hin6I | GCGC | 1 cut(s) | 160 |
| HinP1I | GCGC | 1 cut(s) | 160 |
| HinfI | GANTC | 1 cut(s) | 410 |
| HpaII | CCGG | 1 cut(s) | 54 |
| HphI | GGTGA | 2 cut(s) | 535, 595 |
| Hpy166II | GTNNAC | 1 cut(s) | 357 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 182, 247, 263, 434, 603 |
| Hpy8I | GTNNAC | 1 cut(s) | 357 |
| HpyAV | CCTTC | 2 cut(s) | 419, 571 |
| HpyCH4V | TGCA | 3 cut(s) | 285, 525, 579 |
| Hsp92II | CATG | 5 cut(s) | 218, 310, 579, 583, 606 |
| HspAI | GCGC | 1 cut(s) | 160 |
| Kzo9I | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| Lsp1109I | GCAGC | 2 cut(s) | 62, 280 |
| MaeI | CTAG | 2 cut(s) | 315, 360 |
| MalI | GATC | 7 cut(s) | 114, 125, 135, 188, 334, 382, 542 |
| MboI | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| MboII | GAAGA | 2 cut(s) | 289, 450 |
| MflI | RGATCY | 5 cut(s) | 123, 133, 186, 332, 380 |
| MhlI | GDGCHC | 2 cut(s) | 262, 306 |
| MluCI | AATT | 2 cut(s) | 346, 442 |
| Mph1103I | ATGCAT | 1 cut(s) | 581 |
| MroXI | GAANNNNTTC | 3 cut(s) | 316, 429, 560 |
| MseI | TTAA | 3 cut(s) | 156, 387, 440 |
| MspA1I | CMGCKG | 1 cut(s) | 199 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 3 cut(s) | 55, 94, 547 |
| MvaI | CCWGG | 2 cut(s) | 94, 547 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NcoI | CCATGG | 1 cut(s) | 306 |
| NdeII | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| NlaIII | CATG | 5 cut(s) | 218, 310, 579, 583, 606 |
| NlaIV | GGNNCC | 6 cut(s) | 102, 125, 245, 334, 355, 403 |
| NsiI | ATGCAT | 1 cut(s) | 581 |
| NspI | RCATGY | 1 cut(s) | 218 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PagI | TCATGA | 1 cut(s) | 602 |
| PciI | ACATGT | 1 cut(s) | 214 |
| PdmI | GAANNNNTTC | 3 cut(s) | 316, 429, 560 |
| PfeI | GAWTC | 1 cut(s) | 410 |
| PkrI | GCNGC | 2 cut(s) | 52, 295 |
| PscI | ACATGT | 1 cut(s) | 214 |
| PshBI | ATTAAT | 1 cut(s) | 387 |
| Psp6I | CCWGG | 2 cut(s) | 92, 545 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 92, 545 |
| PspN4I | GGNNCC | 6 cut(s) | 102, 125, 245, 334, 355, 403 |
| PspPI | GGNCC | 1 cut(s) | 354 |
| PsuI | RGATCY | 5 cut(s) | 123, 133, 186, 332, 380 |
| PvuII | CAGCTG | 1 cut(s) | 199 |
| RsaI | GTAC | 1 cut(s) | 487 |
| RsaNI | GTAC | 1 cut(s) | 486 |
| SaqAI | TTAA | 3 cut(s) | 156, 387, 440 |
| SatI | GCNGC | 2 cut(s) | 51, 294 |
| Sau3AI | GATC | 7 cut(s) | 112, 123, 133, 186, 332, 380, 540 |
| Sau96I | GGNCC | 1 cut(s) | 354 |
| ScrFI | CCNGG | 3 cut(s) | 55, 94, 547 |
| SduI | GDGCHC | 2 cut(s) | 262, 306 |
| SetI | ASST | 4 cut(s) | 9, 98, 201, 284 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 1 cut(s) | 354 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmiI | ATTTAAAT | 1 cut(s) | 441 |
| SmlI | CTYRAG | 3 cut(s) | 128, 261, 297 |
| SmoI | CTYRAG | 3 cut(s) | 128, 261, 297 |
| SpeI | ACTAGT | 2 cut(s) | 314, 359 |
| Sse9I | AATT | 2 cut(s) | 346, 442 |
| SspMI | CTAG | 2 cut(s) | 315, 360 |
| StyD4I | CCNGG | 3 cut(s) | 53, 92, 545 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| SwaI | ATTTAAAT | 1 cut(s) | 441 |
| TaqI | TCGA | 2 cut(s) | 27, 262 |
| TasI | AATT | 2 cut(s) | 346, 442 |
| TatI | WGTACW | 1 cut(s) | 485 |
| TfiI | GAWTC | 1 cut(s) | 410 |
| Tru1I | TTAA | 3 cut(s) | 156, 387, 440 |
| Tru9I | TTAA | 3 cut(s) | 156, 387, 440 |
| TseI | GCWGC | 2 cut(s) | 50, 293 |
| TspDTI | ATGAA | 3 cut(s) | 290, 438, 441 |
| TspGWI | ACGGA | 1 cut(s) | 554 |
| VpaK11BI | GGWCC | 1 cut(s) | 354 |
| VspI | ATTAAT | 1 cut(s) | 387 |
| XapI | RAATTY | 1 cut(s) | 442 |
| XceI | RCATGY | 1 cut(s) | 218 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 3 cut(s) | 316, 429, 560 |
| XspI | CTAG | 2 cut(s) | 315, 360 |
| Zsp2I | ATGCAT | 1 cut(s) | 581 |