Rh1AG098300

TNP1/EN/SPM transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000089
Physical Location & Seq
Forward (+)
17146165 .. 17149015
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG098300.1

Sequence Viewer

Length: 1392 bp
ATGGTGAGTGATATTACAAAGGCAGGTCGCAGTAAGAGGAAGCATACTAAGAAAACCGGTGGAATATCACAAGACTTTGATGCAAGGGATGTGAATCACATGGCAGGTCTCCAAGAAGTACATACACATGTTAGTAAAGAAGCTACCCAAGATGGACCAATTCCAAGTAATGATAGTTCTGAACAAGATGCGGTCCAAGAAAATGCATCTGTACAAGATACAGTTGAAGATCCAAGAGGATTGAAAAAGAAAAGAGGTCCAACCAAAATGAAGAAAGTTGCTATGAACCCTGAGAGTCGGATTCAAGTTCAATTTAATAGCTTGGGTGAACCATATGGAGAGGGGTCAATAAGCTTGTCATCTTTTTTGGGCCCTCTTGTACGAGAGCATGTACCTGTAACACTTGATGATTGGAGGAACCTTGGTGATGACCTTAAAGTACCATTATGGGAAGAAGTTCAGGCAAGGTACATCTTGGATGAAGAATGGCAAAAAGATGTCATATTTAAGTCGATGGGATGCCTTTGGAGGGCCTCAAAATCTAGATTAGTTCGTCAAATACAAGCAGCAAAGAACAAACAAGAAAGACTTCGGCTCAAACTAGACAACATACCAACTTTAGCAATTTGGAAGAAGTTTGTCAAGACAAAAACAAGTCCAACATTTAAGACTATAAGTGACAAGTACAAGGCATTAAGGCATAAACAAGTACCACACACATGCAGTCGCAAGGGAATGGTTCGATTAGCAGCTGATATGAAAAGAGATAGTGCCAACCCATCTTCAGTGTCAAGGGTTAAAGTTTGGATCAAATCTCGCACAAAAAAAGATGGTACACCTGTGAATACAGCAATTGGTGAAACTATTGAGAAGTTAAGAGAAGTTGAAAGTAATTCACCCTCATCCTCAACAACTAATGTGAGAGAAGATGCTCTTTCCCAAGTATTAGGACAAGATAAACCTGGACGATTAAGAGGAATGGGAAGAGGAGTTACTATAAGCAAATTAGCCTTCTTACAGTCTAGGGACAAGCATGTGCTCCAGCTAGAAGAGCAACACACTGATATGCGAAGTAGAATCAAGCATTTGGAGAGCTTAGTCCATAAATTAATTGGACATCATGAGAGTGTGAACAAAAACTCCAAGAAAAAGTGCAACTTGTTAGATTTTAGTGGTTCGGGAAAAATAGTTGCAGAAGGACATTGGTCTTCAAGTGATCCAGGCGAACTTGTTCATTTTGTTCCTTTAGGTCCTAATGCTACGAGAGTTTGGGTTGATATCCCAAGGGTCCCTACTGCATCTCTTTGGAGGCCAACATCTGAGCTACATTGTATTGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTGACAAAGTTGTTATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23 Transposase_24

Protein Analysis

463

Amino Acids

51.93

Weight (kDa)

9.68

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 209 - 332 5.2e-22 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 382 - 461 2.1e-07 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 14, 95
AciI CCGC 1 cut(s) 191
AclWI GGATC 3 cut(s) 224, 815, 1211
AcoI YGGCCR 1 cut(s) 1364
AcuI CTGAAG 1 cut(s) 768
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 127
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 7 cut(s) 227, 244, 305, 311, 887, 1212, 1337
AjnI CCWGG 2 cut(s) 961, 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 1329, 1361
AloI GAACNNNNNNTCC 2 cut(s) 1124, 1156
AluBI AGCT 8 cut(s) 143, 321, 354, 752, 1045, 1095, 1324, 1361
AluI AGCT 8 cut(s) 143, 321, 354, 752, 1045, 1095, 1324, 1361
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 224, 815, 1211
AoxI GGCC 4 cut(s) 370, 531, 1310, 1364
ApaI GGGCCC 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 566, 749
AseI ATTAAT 1 cut(s) 1109
AsiGI ACCGGT 1 cut(s) 56
Asp700I GAANNNNTTC 3 cut(s) 456, 588, 1230
AspS9I GGNCC 8 cut(s) 155, 193, 257, 370, 371, 531, 1250, 1288
AsuHPI GGTGA 5 cut(s) 16, 338, 437, 869, 888
AvaII GGWCC 5 cut(s) 155, 193, 257, 1250, 1288
BaeGI GKGCMC 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 1 cut(s) 1366
BanII GRGCYC 1 cut(s) 374
BarI GAAGNNNNNNTAC 2 cut(s) 976, 1008
BbsI GAAGAC 1 cut(s) 1200
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 2 cut(s) 578, 761
BccI CCATC 5 cut(s) 146, 508, 787, 824, 1375
BciT130I CCWGG 2 cut(s) 963, 1221
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 4 cut(s) 543, 602, 1023, 1046
BfuAI ACCTGC 2 cut(s) 14, 95
BisI GCNGC 2 cut(s) 567, 750
BlsI GCNGC 2 cut(s) 568, 751
Bme1390I CCNGG 2 cut(s) 963, 1221
Bme18I GGWCC 5 cut(s) 155, 193, 257, 1250, 1288
BmgT120I GGNCC 8 cut(s) 155, 193, 257, 370, 371, 531, 1250, 1288
BmiI GGNNCC 4 cut(s) 372, 419, 1289, 1290
BmrFI CCNGG 2 cut(s) 963, 1221
BmsI GCATC 7 cut(s) 70, 178, 215, 509, 919, 1307, 1330
BoxI GACNNNNGTC 1 cut(s) 1204
BpiI GAAGAC 1 cut(s) 1200
BpmI CTGGAG 1 cut(s) 1025
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 421, 1283
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 1124, 1154
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 963, 1221
BseDI CCNNGG 2 cut(s) 421, 1283
BseGI GGATG 4 cut(s) 94, 484, 524, 902
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 282, 1311
BseRI GAGGAG 1 cut(s) 1002
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 2 cut(s) 578, 761
BshFI GGCC 4 cut(s) 372, 533, 1312, 1366
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 1041
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 2 cut(s) 1040, 1274
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 1040, 1274
BsnI GGCC 4 cut(s) 372, 533, 1312, 1366
Bso31I GGTCTC 1 cut(s) 113
Bsp120I GGGCCC 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 374, 1041
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 229, 807, 1216
BspACI CCGC 1 cut(s) 191
BspANI GGCC 4 cut(s) 372, 533, 1312, 1366
BspCNI CTCAG 2 cut(s) 283, 1312
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 4 cut(s) 372, 419, 1289, 1290
BspMI ACCTGC 2 cut(s) 14, 95
BspPI GGATC 3 cut(s) 224, 815, 1211
BspQI GCTCTTC 1 cut(s) 1044
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 421, 1283
BssMI GATC 3 cut(s) 229, 807, 1216
BssT1I CCWWGG 2 cut(s) 421, 1283
Bst2UI CCWGG 2 cut(s) 963, 1221
Bst4CI ACNGT 2 cut(s) 223, 1020
Bst6I CTCTTC 2 cut(s) 979, 1044
BstAUI TGTACA 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 48, 291, 1096, 1320
BstF5I GGATG 4 cut(s) 94, 484, 524, 902
BstKTI GATC 3 cut(s) 232, 810, 1219
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 229, 807, 1216
BstMWI GCNNNNNNNGC 1 cut(s) 1051
BstNI CCWGG 2 cut(s) 963, 1221
BstNSI RCATGY 4 cut(s) 131, 392, 723, 1037
BstPAI GACNNNNGTC 1 cut(s) 1204
BstSCI CCNGG 2 cut(s) 961, 1219
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 578, 761
BstV2I GAAGAC 1 cut(s) 1200
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 4 cut(s) 372, 533, 1312, 1366
BtsCI GGATG 4 cut(s) 94, 484, 524, 902
BtsIMutI CAGTG 2 cut(s) 792, 1059
BveI ACCTGC 2 cut(s) 14, 95
CciI TCATGA 1 cut(s) 1120
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 8 cut(s) 155, 193, 257, 370, 371, 531, 1250, 1288
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 6 cut(s) 100, 128, 389, 720, 1034, 1121
DdeI CTNAG 4 cut(s) 48, 291, 1096, 1320
DpnI GATC 3 cut(s) 231, 809, 1218
DpnII GATC 3 cut(s) 229, 807, 1216
EaeI YGGCCR 1 cut(s) 1364
Eam1104I CTCTTC 2 cut(s) 979, 1044
EarI CTCTTC 2 cut(s) 979, 1044
Eco130I CCWWGG 2 cut(s) 421, 1283
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 1279
Eco47I GGWCC 5 cut(s) 155, 193, 257, 1250, 1288
Eco57I CTGAAG 1 cut(s) 768
EcoO109I RGGNCCY 4 cut(s) 371, 531, 1250, 1288
EcoRII CCWGG 2 cut(s) 961, 1219
EcoRV GATATC 1 cut(s) 1279
EcoT14I CCWWGG 2 cut(s) 421, 1283
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 421, 1283
FaeI CATG 6 cut(s) 103, 131, 392, 723, 1037, 1124
FalI AAGNNNNNCTT 6 cut(s) 573, 605, 918, 950, 1142, 1174
FaqI GGGAC 2 cut(s) 1040, 1274
FatI CATG 6 cut(s) 99, 127, 388, 719, 1033, 1120
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 567, 750
FokI GGATG 4 cut(s) 101, 491, 531, 889
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 567, 750
FspBI CTAG 4 cut(s) 543, 602, 1023, 1046
GluI GCNGC 2 cut(s) 567, 750
GsuI CTGGAG 1 cut(s) 1025
HaeIII GGCC 4 cut(s) 372, 533, 1312, 1366
HapII CCGG 1 cut(s) 57
Hin1II CATG 6 cut(s) 103, 131, 392, 723, 1037, 1124
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 4 cut(s) 94, 295, 301, 1077
HpaII CCGG 1 cut(s) 57
HphI GGTGA 5 cut(s) 16, 338, 437, 869, 888
Hpy166II GTNNAC 3 cut(s) 329, 836, 1132
Hpy188I TCNGA 4 cut(s) 181, 300, 1321, 1372
Hpy188III TCNNGA 4 cut(s) 543, 643, 1121, 1179
Hpy8I GTNNAC 3 cut(s) 329, 836, 1132
HpyAV CCTTC 2 cut(s) 1021, 1190
HpyCH4III ACNGT 2 cut(s) 223, 1020
HpyCH4V TGCA 6 cut(s) 83, 206, 723, 1155, 1193, 1298
HpyF10VI GCNNNNNNNGC 1 cut(s) 1051
HpyF3I CTNAG 4 cut(s) 48, 291, 1096, 1320
Hsp92II CATG 6 cut(s) 103, 131, 392, 723, 1037, 1124
KflI GGGWCCC 1 cut(s) 1288
Kzo9I GATC 3 cut(s) 229, 807, 1216
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 1 cut(s) 1044
Lsp1109I GCAGC 2 cut(s) 578, 761
LweI GCATC 7 cut(s) 70, 178, 215, 509, 919, 1307, 1330
MaeI CTAG 4 cut(s) 543, 602, 1023, 1046
MaeIII GTNAC 3 cut(s) 397, 677, 991
MalI GATC 3 cut(s) 231, 809, 1218
MboI GATC 3 cut(s) 229, 807, 1216
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 374, 1041
MlsI TGGCCA 1 cut(s) 1366
MluCI AATT 8 cut(s) 159, 311, 624, 852, 892, 1004, 1106, 1110
MluNI TGGCCA 1 cut(s) 1366
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 3 cut(s) 278, 284, 683
Mox20I TGGCCA 1 cut(s) 1366
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 3 cut(s) 456, 588, 1230
MscI TGGCCA 1 cut(s) 1366
MseI TTAA 9 cut(s) 315, 435, 507, 666, 695, 798, 875, 971, 1109
MslI CAYNNNNRTG 4 cut(s) 126, 718, 1064, 1125
Msp20I TGGCCA 1 cut(s) 1366
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 963, 1221
MunI CAATTG 1 cut(s) 852
MvaI CCWGG 2 cut(s) 963, 1221
MwoI GCNNNNNNNGC 1 cut(s) 1051
NdeI CATATG 1 cut(s) 334
NdeII GATC 3 cut(s) 229, 807, 1216
NlaIII CATG 6 cut(s) 103, 131, 392, 723, 1037, 1124
NlaIV GGNNCC 4 cut(s) 372, 419, 1289, 1290
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 4 cut(s) 131, 392, 723, 1037
PagI TCATGA 1 cut(s) 1120
PciI ACATGT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 1044
PdmI GAANNNNTTC 3 cut(s) 456, 588, 1230
PfeI GAWTC 3 cut(s) 94, 301, 1077
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 2 cut(s) 568, 751
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PpuMI RGGWCCY 2 cut(s) 1250, 1288
PscI ACATGT 1 cut(s) 127
PshAI GACNNNNGTC 1 cut(s) 1204
PshBI ATTAAT 1 cut(s) 1109
Psp5II RGGWCCY 2 cut(s) 1250, 1288
Psp6I CCWGG 2 cut(s) 961, 1219
PspGI CCWGG 2 cut(s) 961, 1219
PspN4I GGNNCC 4 cut(s) 372, 419, 1289, 1290
PspOMI GGGCCC 1 cut(s) 370
PspPI GGNCC 8 cut(s) 155, 193, 257, 370, 371, 531, 1250, 1288
PspPPI RGGWCCY 2 cut(s) 1250, 1288
PsrI GAACNNNNNNTAC 2 cut(s) 160, 192
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 752
RseI CAYNNNNRTG 4 cut(s) 126, 718, 1064, 1125
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 9 cut(s) 315, 435, 507, 666, 695, 798, 875, 971, 1109
SatI GCNGC 2 cut(s) 567, 750
Sau3AI GATC 3 cut(s) 229, 807, 1216
Sau96I GGNCC 8 cut(s) 155, 193, 257, 370, 371, 531, 1250, 1288
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 963, 1221
SduI GDGCHC 2 cut(s) 374, 1041
SfaNI GCATC 7 cut(s) 70, 178, 215, 509, 919, 1307, 1330
SinI GGWCC 5 cut(s) 155, 193, 257, 1250, 1288
SmiMI CAYNNNNRTG 4 cut(s) 126, 718, 1064, 1125
Sse9I AATT 8 cut(s) 159, 311, 624, 852, 892, 1004, 1106, 1110
SsiI CCGC 1 cut(s) 191
SspMI CTAG 4 cut(s) 543, 602, 1023, 1046
StyD4I CCNGG 2 cut(s) 961, 1219
StyI CCWWGG 2 cut(s) 421, 1283
TaaI ACNGT 2 cut(s) 223, 1020
TaqI TCGA 2 cut(s) 512, 742
TasI AATT 8 cut(s) 159, 311, 624, 852, 892, 1004, 1106, 1110
TatI WGTACW 3 cut(s) 118, 211, 684
TfiI GAWTC 3 cut(s) 94, 301, 1077
Tru1I TTAA 9 cut(s) 315, 435, 507, 666, 695, 798, 875, 971, 1109
Tru9I TTAA 9 cut(s) 315, 435, 507, 666, 695, 798, 875, 971, 1109
TscAI CASTG 2 cut(s) 792, 1066
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 2 cut(s) 566, 749
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 5 cut(s) 284, 299, 495, 773, 1223
TspRI CASTG 2 cut(s) 792, 1066
VpaK11BI GGWCC 5 cut(s) 155, 193, 257, 1250, 1288
VspI ATTAAT 1 cut(s) 1109
XbaI TCTAGA 1 cut(s) 542
XceI RCATGY 4 cut(s) 131, 392, 723, 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 1109
XmnI GAANNNNTTC 3 cut(s) 456, 588, 1230
XspI CTAG 4 cut(s) 543, 602, 1023, 1046
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.