Rh5CG422300

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000089
Physical Location & Seq
Reverse (-)
58345567 .. 58347491
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG422300.1

Sequence Viewer

Length: 306 bp
ATGCTTCTTAATTATCCGGACGACCAATATCTCCAACTCTCTTTGGAATTTTCTTCGAGTGTATTGATTCTGGATGTATTCAAATGTTTTTCGCAGCAGGAGATTAACCATGCTAGCGCTGGTGGGTTGTGGGCTGAGCTTGTAAGCAACATAGTTGTAATTGTACATTTTCCGAGTTTGGATCTGAATTTGCTTGCCTACGAATTACATGAATATATGATGTTGGATAAAGGTTGGGTGCGTCTTCACAGAGTTGATCCCGAGTACAAGAAAGGAGCATGGAATTTTGTGAAAACAGTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

101

Amino Acids

11.7

Weight (kDa)

5.13

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 16
AclWI GGATC 2 cut(s) 189, 251
AcsI RAATTY 3 cut(s) 47, 187, 283
AfaI GTAC 2 cut(s) 165, 266
AfeI AGCGCT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwI GGATC 2 cut(s) 189, 251
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 3 cut(s) 47, 187, 283
AspLEI GCGC 1 cut(s) 119
AsuNHI GCTAGC 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 106
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 260
BmtI GCTAGC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 16
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 181, 256
Bsp1720I GCTNAGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 127
BspEI TCCGGA 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 189, 251
BsrGI TGTACA 1 cut(s) 163
BssMI GATC 2 cut(s) 181, 256
Bst4CI ACNGT 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 115, 195
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 184, 259
BstMBI GATC 2 cut(s) 181, 256
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 115, 195
CfoI GCGC 1 cut(s) 119
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 164, 265
CviAII CATG 3 cut(s) 110, 209, 279
CviJI RGCY 2 cut(s) 134, 139
CviKI_1 RGCY 2 cut(s) 134, 139
CviQI GTAC 2 cut(s) 164, 265
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 183, 258
DpnII GATC 2 cut(s) 181, 256
Eco47III AGCGCT 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 260
FaeI CATG 3 cut(s) 113, 212, 282
FaiI YATR 6 cut(s) 111, 152, 210, 216, 218, 280
FatI CATG 3 cut(s) 109, 208, 278
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 113, 212, 282
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 174, 186
Hpy188III TCNNGA 3 cut(s) 17, 71, 260
HpyCH4III ACNGT 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 3 cut(s) 113, 212, 282
HspAI GCGC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 181, 256
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 30, 56, 83, 105
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 114
MalI GATC 2 cut(s) 183, 258
MboI GATC 2 cut(s) 181, 256
MboII GAAGA 2 cut(s) 45, 236
MflI RGATCY 1 cut(s) 181
MluCI AATT 6 cut(s) 10, 47, 159, 187, 203, 283
MmeI TCCRAC 2 cut(s) 58, 204
MroI TCCGGA 1 cut(s) 16
MseI TTAA 2 cut(s) 9, 105
MspI CCGG 1 cut(s) 17
NdeII GATC 2 cut(s) 181, 256
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 3 cut(s) 113, 212, 282
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 165, 266
RsaNI GTAC 2 cut(s) 164, 265
SaqAI TTAA 2 cut(s) 9, 105
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 181, 256
SetI ASST 2 cut(s) 141, 235
Sse9I AATT 6 cut(s) 10, 47, 159, 187, 203, 283
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 56
TasI AATT 6 cut(s) 10, 47, 159, 187, 203, 283
TatI WGTACW 2 cut(s) 163, 264
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 9, 105
Tru9I TTAA 2 cut(s) 9, 105
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 3 cut(s) 47, 187, 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.