Rroxscaffold_5G00360920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000089
Physical Location & Seq
Forward (+)
41568700 .. 41572247
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360920.1

Sequence Viewer

Length: 537 bp
ATGCGCAGAAAGAGTGTTGTATTAAATTATTTACCACTATATGCGTCATTTGCATTCCCGTACCTCCCAAGCGCCTCCCGGCTTCGGCTACGTCCTTACCAGTTCATCCTATGCCTCGGCTCCGTCGACCGAGCCACCGACTCCACTCTCGTTGCCGACCTCTCGTTGTCAATCTCTCGACGCATTTCGACGGCCAAATTTCGGCGTTACGGCTACGAAGGTACAGTTTCGTCAAGATGGAGAAACAATGGCTGCAATTTGATAGAGAAAAGGAACAGACAAAGAAGAGGGAAAGAGGTGATGAAGAACATAAAAAGAAGGGGAAAAAGAAGAGGAGGAAGTGGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGCAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTGGTAGCTGAAGGAAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCGTTGTGTGCCTCTTGGACGAAATTGTTGGAAGGTTTGGGTTGATGTGGTGTTTGATGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

178

Amino Acids

20.49

Weight (kDa)

10.19

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccI GTMKAC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 3 cut(s) 62, 223, 463
AfiI CCNNNNNNNGG 2 cut(s) 84, 201
AgsI TTSAA 3 cut(s) 374, 397, 450
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw21I GWGCWC 1 cut(s) 391
Alw44I GTGCAC 1 cut(s) 387
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 197
AspLEI GCGC 2 cut(s) 6, 74
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 231
BceAI ACGGC 2 cut(s) 207, 226
BcnI CCSGG 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 75
BglII AGATCT 1 cut(s) 441
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 201
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 84, 201
BseMI GCAATG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 84, 201
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 367, 441
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 367, 441
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 3 cut(s) 280, 325, 451
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 6, 74
BstKTI GATC 2 cut(s) 370, 444
BstMBI GATC 2 cut(s) 367, 441
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 105
CfoI GCGC 2 cut(s) 6, 74
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 2 cut(s) 33, 189
Csp6I GTAC 3 cut(s) 61, 222, 462
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviJI RGCY 8 cut(s) 82, 88, 120, 134, 194, 213, 252, 431
CviKI_1 RGCY 8 cut(s) 82, 88, 120, 134, 194, 213, 252, 431
CviQI GTAC 3 cut(s) 61, 222, 462
DpnI GATC 2 cut(s) 369, 443
DpnII GATC 2 cut(s) 367, 441
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 280, 325, 451
EarI CTCTTC 3 cut(s) 280, 325, 451
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 453
FaiI YATR 5 cut(s) 40, 42, 112, 311, 411
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 253
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 73
GluI GCNGC 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 79
HgaI GACGC 2 cut(s) 33, 189
HhaI GCGC 2 cut(s) 6, 74
Hin6I GCGC 2 cut(s) 4, 72
HinP1I GCGC 2 cut(s) 4, 72
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 127, 344, 389
Hpy188III TCNNGA 3 cut(s) 177, 234, 371
Hpy8I GTNNAC 3 cut(s) 127, 344, 389
Hpy99I CGWCG 3 cut(s) 128, 183, 193
HpyAV CCTTC 4 cut(s) 212, 312, 428, 496
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 53, 255, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 91
HspAI GCGC 2 cut(s) 4, 72
Kzo9I GATC 2 cut(s) 367, 441
LmnI GCTCC 2 cut(s) 125, 361
LpnPI CCDG 2 cut(s) 92, 113
Lsp1109I GCAGC 1 cut(s) 239
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 369, 443
MboI GATC 2 cut(s) 367, 441
MboII GAAGA 6 cut(s) 297, 316, 342, 425, 428, 438
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 6 cut(s) 25, 197, 256, 397, 406, 493
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 9 cut(s) 74, 85, 125, 170, 281, 289, 326, 329, 492
MseI TTAA 1 cut(s) 23
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 79
NdeII GATC 2 cut(s) 367, 441
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 96
NsbI TGCGCA 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 441
RsaI GTAC 3 cut(s) 62, 223, 463
RsaNI GTAC 3 cut(s) 61, 222, 462
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 367, 441
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 391
SetI ASST 7 cut(s) 66, 94, 162, 223, 300, 433, 507
SinI GGWCC 1 cut(s) 344
Sse9I AATT 6 cut(s) 25, 197, 256, 397, 406, 493
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 94
TaqI TCGA 3 cut(s) 126, 178, 188
TaqII GACCGA 1 cut(s) 144
TasI AATT 6 cut(s) 25, 197, 256, 397, 406, 493
TatI WGTACW 1 cut(s) 461
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 4 cut(s) 94, 317, 426, 435
TspGWI ACGGA 1 cut(s) 112
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.