Rorug01G0312300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
43013859 .. 43017065
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0312300.1

Sequence Viewer

Length: 3186 bp
ATGGTGGATATTCGGAGCAGATTGGAAGTGCTTATGAATGAGCCGATGTCTGAGGCAGTTTACAATGAGAAGAAAGATATTCTGTCGCAGGAAGAGGCATTTTGGAAGCAACAGGCCAAGGTTATTTGGTTGCAAGAGGGTGATAGAAATTCAGGTTTCTTTCACAGGAAGGCAGCTAATCGGAAGCGCAAAAATAATTTATTGGGACTGTTTGATCATGAGGGGCAGTGGAAAGATGATGATGAAGGTATGGAGAATATTGTGACTTCATATTTTTCAAAAATGTTTACTGCCACCGATCTTGATGTTGACGCAATTAATCTGACCTTAGCGGCAATTCAGCCGTGTGTTACTAGTGATATGAATCAAAAGCTATGTGCCCCGTATTCAAAAGAAGAGGTCAAGTGTGCTTTATTTCAGATGTACCCGACGAAATCTCCTGGCCCTGATGGTATGCCTCCATTGTTTTTTCAGCATTATTGGGAGGATATTGGGAAAGATGTTACTGAGGCAGTACAAAGCTTTCTGCACACTGGTTCTTTGTTAAAACAGATTAATTTTACTCACATTTGTTTGATACCAAAGGTGCAGAATCCTGAGAATATGGCAGACTTACAACCTATTGCACTTTGTAATGTTATTTACAAACTTTGTTCTAAAGTAATTGCAAACAGACTGAAGGTTTTCTTGCCATCTATTATTTCTCCTTTTCAGAGTGCATTTGTGCCTGGGAAACTGATCACGGATAATATCCTAGTGGCTAATGAAGTAGCTCATTTTGTCCATAACAAAAGGGAAGGTCAAGTTGGGTATATTGCTTTGAAGTTGGATTTGAGCAAGGCCTATGATCGTATGGAATGGGTATTTTTGCGCAAGGTTTTGGAGAGATTTGGCTTTGCTTCTACATGGATAGATGTTGTTATGCAATGTGTTTGCTCTGTGAGGTACTCTTTTCTGGTTAGAGGGAAGCCTAGAGGCCTAGTTATTCCAACAAGGGGTTTGAGACAAGGGGATCCATTATCACCCTATCTGTTTCTTATTAATGCAAAAGGCTTCTCGACATTGTTACAACAAAAGCAACGGTTGGGGTTATTACCTGGTATTGCTATTTGCACAGGCGCACCATCTGTCAATCATTTGTTATTTGCAGACGATAGTATGCTATATGCTCAAGCTACTCCGGAAGCTTGTTTTCATATCAAAGATGTTATACAGACATATGGAAGGGCTTCAGGTCAGGTGGTTAACTTTCATAAAAGCTCTGTTGTGTTTAGTAAGAATGTTGCAGATTGTGAGCAAGATAGAGTGGCTAATCTGTTGGGTGTTGAAGTGGTGGAGTCCCATGAGAGATACTTAGGTCTTCCTACTTACATAGGATGCAAGAAAACAGCTACCTTCCTTTATATAAAGGAGCGGTTAGCTGAAAAACTGAAGCATTGGCAAGGCAAGATGTTGAGTGGTGCTGGTAAGGATATTTTGATCAGGGTGGTGGCTCAAGCTCTCCCTAATTATGCTCTAAGTGTCTTTCAATTGACAAAGAAATTTTGTGAAGATCTTGAGCAGATGTGTGCTAGATTTTGGTGGGGGAGTACAGATGATAAACGTAAAATACATTGGAAGAAATGGGATGATTTGTGTCATGCCAAGGAAGAGGGGGGCTTGGGTTTTCGGAGCTTATCAGAATTTAATTCTTCGATGTTGGCGAAGCAAGCTTGGCGGGTTATCTCTAACTCGGATACTCTTGTGGCACAATTGTACAAAGCTAGATATTATCCTAATGGTTCTTTTTGGAATGCAGAAGAACATGCTACTCCTTCTTATTCTTGGCGTAGCATTTTTTCTACTCGAAATTTATTGATTGAAGGTGCTCATTGGCAAATTGGGAATGGAAATAATGTTCTCATGTTGCGGGATTCTTGGATTCCTAATACTATTACTCATAAACCACAGCTGTTGGGACCGGTGCAAGATAATTTGGCCAAGGTGAGTGAGTTGATTATTCCTCCTAATTCTTGGGATGAGTATAAACTTCGTTCCACTTTTATACACTCAGATGCAGAAGCTATTCTAGCAATTCCTTTGAGTGCTAGAAATCCGGATGATAGATTGACTTGGCATTTGGGGAAACAAGGTATGTTTACTGTCAAATCTGCATATCGTCATGCTTTCTCTAAAACTGCATCTACTCTTTCTCCTTCTGTTGTGAGTAATCAAAGAGTGTGGAAGAACATTTGGCATGCCAAAATCCCTAGCACGGCAAAGGTTAATGCTTGGAGGATTTGTCATAATATTCTGCCTACTCTAGACAGATTGGCATCAAAGAATGTTATTTTAGAATCTCAGAGTTGTGTTTTTTGCAATGAGGTGGAGACAATTATTCATCTTACCAGAGATTGTGCTTTCACTAGAGAAGTGTTGTCTACCAATTTGCAAATTGCTGGCAGTTGTTTTGGGGGGGATTCTGATCAGATGGATGCTCTTAATTGGTTGAATTTGTGTGTTGGGAAGTTATCAAAAACAGACCTTGATCAACTGTTGCATTTTATTTGGGGAATTTGGAAAGAAAGGAATGATAGGGTATGGGAAAACAAAATCACTTTAGCTCGTCATATAGCTCTCATGTCTTTTGTTAGACTGAGTAACTTTATTTTTCACAATACAAAATTACATGGTTCTCAGGGAACTAGGAAAATTTTGAATTGGCAGTGCCCTCCTGTGGGTTGGTTGAAGGTGAATTTTGATGGAGCTTTTAGTCTGAGCTCTGGCAAAGCAGCAATTGGTTTCTTAGTCCGTGACTCTCAAGGGACTTTTTTGGGAGCAGTGGGGAAGGTAGTTACTCGAGTTCAGTCTGCTGAACATGTCGAGCTCTTGGCTTGTAAGGAAGCAGTTGGTTATGTGATGGAACATGGTCTATGTCCAGTAATTTTGGAGACTGATTGTTTGGTTTTGAAGCAACAAGTGTGTCAGGAGGAGGTGCAAAATTATTCTATTCTTGGAAGGTTATATGAGGACCTCAGACAAGATTTGAAAGAGGTGCAAGTTAGAATTATTCATGCTAGAAGAGAGGAAAACATGGCTGCACACAAATTGGCAGCTCATGCTGCAGATTTTGATCAAGCTTTCTTTTGGTCTAATATTCCTTCATTCATTCAAGATGTAATAGAATCTGAGAAATGTATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1061

Amino Acids

120.41

Weight (kDa)

8.54

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 197 - 443 1.2e-26 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 713 - 805 1.8e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 912 - 1034 2.8e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 872
AccBSI CCGCTC 1 cut(s) 1414
AccI GTMKAC 1 cut(s) 2420
AccIII TCCGGA 2 cut(s) 1180, 2095
AciI CCGC 4 cut(s) 332, 1414, 1717, 1909
AclWI GGATC 2 cut(s) 1007, 1020
AcoI YGGCCR 1 cut(s) 1977
AcsI RAATTY 8 cut(s) 148, 1541, 1682, 1849, 2491, 2553, 2691, 2734
AcuI CTGAAG 3 cut(s) 698, 1215, 1451
AfaI GTAC 5 cut(s) 425, 516, 947, 1591, 1757
AfiI CCNNNNNNNGG 4 cut(s) 995, 2254, 2716, 2717
AflIII ACRYGT 1 cut(s) 2857
AgeI ACCGGT 1 cut(s) 1960
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 3 cut(s) 439, 727, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 789, 821
AloI GAACNNNNNNTCC 2 cut(s) 1881, 1913
Alw21I GWGCWC 3 cut(s) 1870, 2762, 2868
Alw26I GTCTC 3 cut(s) 997, 2363, 2924
AlwI GGATC 2 cut(s) 1007, 1020
Ama87I CYCGRG 1 cut(s) 2838
Aor13HI TCCGGA 2 cut(s) 1180, 2095
AoxI GGCC 5 cut(s) 114, 442, 840, 976, 1977
ApeKI GCWGC 5 cut(s) 173, 2771, 3077, 3092, 3101
ApoI RAATTY 8 cut(s) 148, 1541, 1682, 1849, 2491, 2553, 2691, 2734
ArsI GACNNNNNNTTYG 4 cut(s) 2101, 2133, 2923, 2955
AseI ATTAAT 3 cut(s) 318, 555, 1041
AsiGI ACCGGT 1 cut(s) 1960
Asp700I GAANNNNTTC 3 cut(s) 683, 1228, 2064
AspLEI GCGC 3 cut(s) 189, 873, 1121
AspS9I GGNCC 3 cut(s) 443, 1958, 3010
AsuHPI GGTGA 4 cut(s) 152, 1014, 1996, 2743
AvaI CYCGRG 1 cut(s) 2838
AvaII GGWCC 2 cut(s) 1958, 3010
BaeGI GKGCMC 2 cut(s) 382, 2711
BaeI ACNNNNGTAYC 4 cut(s) 1342, 1375, 1728, 1761
BalI TGGCCA 1 cut(s) 1979
BamHI GGATCC 1 cut(s) 1012
BanII GRGCYC 2 cut(s) 2762, 2868
BbsI GAAGAC 1 cut(s) 1352
Bbv12I GWGCWC 3 cut(s) 1870, 2762, 2868
BbvI GCAGC 5 cut(s) 185, 2783, 3064, 3088, 3104
BccI CCATC 6 cut(s) 443, 700, 1132, 2464, 2735, 2893
BceAI ACGGC 2 cut(s) 328, 2271
BciT130I CCWGG 3 cut(s) 441, 729, 1098
BciVI GTATCC 1 cut(s) 1729
BclI TGATCA 6 cut(s) 214, 738, 1479, 2464, 2527, 3112
BcoDI GTCTC 3 cut(s) 997, 2363, 2924
BcuI ACTAGT 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 3102
BfuI GTATCC 1 cut(s) 1729
BglII AGATCT 1 cut(s) 1552
BisI GCNGC 6 cut(s) 174, 333, 2772, 3078, 3093, 3102
BlsI GCNGC 6 cut(s) 175, 334, 2773, 3079, 3094, 3103
Bme1390I CCNGG 3 cut(s) 441, 729, 1098
Bme18I GGWCC 2 cut(s) 1958, 3010
BmeT110I CYCGRG 1 cut(s) 2838
BmgT120I GGNCC 3 cut(s) 443, 1958, 3010
BmiI GGNNCC 2 cut(s) 1014, 1959
BmrFI CCNGG 3 cut(s) 441, 729, 1098
BmsI GCATC 5 cut(s) 1367, 2044, 2189, 2324, 2464
BpiI GAAGAC 1 cut(s) 1352
Bpu10I CCTNAGC 1 cut(s) 328
BpuEI CTTGAG 4 cut(s) 1155, 1479, 1577, 2784
BsaBI GATNNNNATC 4 cut(s) 363, 2314, 2463, 3111
BsaJI CCNNGG 4 cut(s) 117, 728, 1644, 1980
BsaWI WCCGGW 3 cut(s) 1180, 1960, 2095
BsaXI ACNNNNNCTCC 6 cut(s) 421, 451, 2176, 2206, 2266, 2296
Bsc4I CCNNNNNNNGG 4 cut(s) 995, 2254, 2716, 2717
Bse118I RCCGGY 1 cut(s) 1960
Bse1I ACTGG 2 cut(s) 538, 2918
Bse3DI GCAATG 2 cut(s) 932, 2365
Bse8I GATNNNNATC 4 cut(s) 363, 2314, 2463, 3111
BseAI TCCGGA 2 cut(s) 1180, 2095
BseBI CCWGG 3 cut(s) 441, 729, 1098
BseDI CCNNGG 4 cut(s) 117, 728, 1644, 1980
BseGI GGATG 5 cut(s) 1382, 1633, 2023, 2104, 2479
BseJI GATNNNNATC 4 cut(s) 363, 2314, 2463, 3111
BseLI CCNNNNNNNGG 4 cut(s) 995, 2254, 2716, 2717
BseMI GCAATG 2 cut(s) 932, 2365
BseNI ACTGG 2 cut(s) 538, 2918
BseRI GAGGAG 1 cut(s) 2984
BseSI GKGCMC 2 cut(s) 382, 2711
BseXI GCAGC 5 cut(s) 185, 2783, 3064, 3088, 3104
BsgI GTGCAG 3 cut(s) 512, 608, 3063
BshFI GGCC 5 cut(s) 116, 444, 842, 978, 1979
BshTI ACCGGT 1 cut(s) 1960
BsiHKAI GWGCWC 3 cut(s) 1870, 2762, 2868
BsiHKCI CYCGRG 1 cut(s) 2838
BsiSI CCGG 3 cut(s) 1181, 1961, 2096
BslFI GGGAC 4 cut(s) 219, 1324, 1971, 2818
BslI CCNNNNNNNGG 4 cut(s) 995, 2254, 2716, 2717
BsmAI GTCTC 3 cut(s) 997, 2363, 2924
BsmFI GGGAC 4 cut(s) 219, 1324, 1971, 2818
BsmI GAATGC 1 cut(s) 1798
BsnI GGCC 5 cut(s) 116, 444, 842, 978, 1979
BsoBI CYCGRG 1 cut(s) 2838
Bsp1286I GDGCHC 5 cut(s) 382, 1870, 2711, 2762, 2868
Bsp13I TCCGGA 2 cut(s) 1180, 2095
Bsp1407I TGTACA 1 cut(s) 1755
BspACI CCGC 4 cut(s) 332, 1414, 1717, 1909
BspANI GGCC 5 cut(s) 116, 444, 842, 978, 1979
BspEI TCCGGA 2 cut(s) 1180, 2095
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 1014, 1959
BspMAI CTGCAG 1 cut(s) 3106
BspPI GGATC 2 cut(s) 1007, 1020
BsrBI CCGCTC 1 cut(s) 1414
BsrDI GCAATG 2 cut(s) 932, 2365
BsrFI RCCGGY 1 cut(s) 1960
BsrGI TGTACA 1 cut(s) 1755
BsrI ACTGG 2 cut(s) 538, 2918
BssAI RCCGGY 1 cut(s) 1960
BssECI CCNNGG 4 cut(s) 117, 728, 1644, 1980
BssT1I CCWWGG 3 cut(s) 117, 1644, 1980
Bst2UI CCWGG 3 cut(s) 441, 729, 1098
Bst4CI ACNGT 4 cut(s) 210, 1083, 2143, 2535
Bst6I CTCTTC 4 cut(s) 87, 390, 1644, 3055
BstAPI GCANNNNNTGC 1 cut(s) 3098
BstAUI TGTACA 1 cut(s) 1755
BstC8I GCNNGC 3 cut(s) 1710, 2238, 2440
BstF5I GGATG 5 cut(s) 1382, 1633, 2023, 2104, 2479
BstHHI GCGC 3 cut(s) 189, 873, 1121
BstMAI GTCTC 3 cut(s) 997, 2363, 2924
BstMWI GCNNNNNNNGC 5 cut(s) 1709, 1714, 2069, 3098, 3101
BstNI CCWGG 3 cut(s) 441, 729, 1098
BstNSI RCATGY 3 cut(s) 1808, 2240, 2861
BstSCI CCNGG 3 cut(s) 439, 727, 1096
BstSFI CTRYAG 1 cut(s) 3102
BstSLI GKGCMC 2 cut(s) 382, 2711
BstV1I GCAGC 5 cut(s) 185, 2783, 3064, 3088, 3104
BstV2I GAAGAC 1 cut(s) 1352
BstX2I RGATCY 2 cut(s) 1012, 1552
BstYI RGATCY 2 cut(s) 1012, 1552
BsuI GTATCC 1 cut(s) 1729
BsuRI GGCC 5 cut(s) 116, 444, 842, 978, 1979
BtsCI GGATG 5 cut(s) 1382, 1633, 2023, 2104, 2479
BtsI GCAGTG 3 cut(s) 233, 2711, 2826
BtsIMutI CAGTG 4 cut(s) 233, 531, 2711, 2826
Cac8I GCNNGC 3 cut(s) 1710, 2238, 2440
CciI TCATGA 1 cut(s) 217
CfoI GCGC 3 cut(s) 189, 873, 1121
Cfr10I RCCGGY 1 cut(s) 1960
Cfr13I GGNCC 3 cut(s) 443, 1958, 3010
CseI GACGC 1 cut(s) 320
CsiI ACCWGGT 1 cut(s) 1096
Csp6I GTAC 5 cut(s) 424, 515, 946, 1590, 1756
CspAI ACCGGT 1 cut(s) 1960
CspCI CAANNNNNGTGG 6 cut(s) 283, 318, 1935, 1970, 2201, 2236
CviQI GTAC 5 cut(s) 424, 515, 946, 1590, 1756
EaeI YGGCCR 1 cut(s) 1977
Eam1104I CTCTTC 4 cut(s) 87, 390, 1644, 3055
EarI CTCTTC 4 cut(s) 87, 390, 1644, 3055
Ecl136II GAGCTC 2 cut(s) 2760, 2866
Eco130I CCWWGG 3 cut(s) 117, 1644, 1980
Eco147I AGGCCT 2 cut(s) 842, 978
Eco24I GRGCYC 2 cut(s) 2762, 2868
Eco47I GGWCC 2 cut(s) 1958, 3010
Eco53kI GAGCTC 2 cut(s) 2760, 2866
Eco57I CTGAAG 3 cut(s) 698, 1215, 1451
Eco88I CYCGRG 1 cut(s) 2838
EcoICRI GAGCTC 2 cut(s) 2760, 2866
EcoO109I RGGNCCY 1 cut(s) 3010
EcoRII CCWGG 3 cut(s) 439, 727, 1096
EcoT14I CCWWGG 3 cut(s) 117, 1644, 1980
EcoT38I GRGCYC 2 cut(s) 2762, 2868
ErhI CCWWGG 3 cut(s) 117, 1644, 1980
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 4 cut(s) 219, 1324, 1971, 2818
FauI CCCGC 2 cut(s) 1710, 1902
FauNDI CATATG 1 cut(s) 1219
FbaI TGATCA 6 cut(s) 214, 738, 1479, 2464, 2527, 3112
FblI GTMKAC 1 cut(s) 2420
Fnu4HI GCNGC 6 cut(s) 174, 333, 2772, 3078, 3093, 3102
FokI GGATG 5 cut(s) 1389, 1640, 2030, 2111, 2486
FriOI GRGCYC 2 cut(s) 2762, 2868
Fsp4HI GCNGC 6 cut(s) 174, 333, 2772, 3078, 3093, 3102
FspI TGCGCA 1 cut(s) 872
GlaI GCGC 3 cut(s) 188, 872, 1120
GluI GCNGC 6 cut(s) 174, 333, 2772, 3078, 3093, 3102
HaeIII GGCC 5 cut(s) 116, 444, 842, 978, 1979
HapII CCGG 3 cut(s) 1181, 1961, 2096
HgaI GACGC 1 cut(s) 320
HhaI GCGC 3 cut(s) 189, 873, 1121
Hin6I GCGC 3 cut(s) 187, 871, 1119
HinP1I GCGC 3 cut(s) 187, 871, 1119
HincII GTYRAC 2 cut(s) 310, 1246
HindII GTYRAC 2 cut(s) 310, 1246
HindIII AAGCTT 4 cut(s) 520, 1185, 1710, 3117
HinfI GANTC 9 cut(s) 364, 592, 1337, 1913, 1921, 2336, 2459, 2795, 3164
HpaI GTTAAC 1 cut(s) 1246
HpaII CCGG 3 cut(s) 1181, 1961, 2096
HphI GGTGA 4 cut(s) 152, 1014, 1996, 2743
Hpy166II GTNNAC 6 cut(s) 61, 288, 310, 1246, 2139, 2421
Hpy8I GTNNAC 6 cut(s) 61, 288, 310, 1246, 2139, 2421
Hpy99I CGWCG 1 cut(s) 433
HpyCH4III ACNGT 4 cut(s) 210, 1083, 2143, 2535
HpyCH4IV ACGT 1 cut(s) 1603
HpyF10VI GCNNNNNNNGC 5 cut(s) 1709, 1714, 2069, 3098, 3101
HpySE526I ACGT 1 cut(s) 1603
HspAI GCGC 3 cut(s) 187, 871, 1119
Kpn2I TCCGGA 2 cut(s) 1180, 2095
Ksp22I TGATCA 6 cut(s) 214, 738, 1479, 2464, 2527, 3112
KspAI GTTAAC 1 cut(s) 1246
LmnI GCTCC 5 cut(s) 15, 1411, 1671, 2744, 2816
Lsp1109I GCAGC 5 cut(s) 185, 2783, 3064, 3088, 3104
LweI GCATC 5 cut(s) 1367, 2044, 2189, 2324, 2464
MabI ACCWGGT 1 cut(s) 1096
MaeII ACGT 1 cut(s) 1603
MaeIII GTNAC 7 cut(s) 262, 349, 502, 1065, 2639, 2792, 2833
MbiI CCGCTC 1 cut(s) 1414
MfeI CAATTG 3 cut(s) 1529, 1751, 2775
MflI RGATCY 2 cut(s) 1012, 1552
MhlI GDGCHC 5 cut(s) 382, 1870, 2711, 2762, 2868
MlsI TGGCCA 1 cut(s) 1979
MluNI TGGCCA 1 cut(s) 1979
MlyI GAGTC 2 cut(s) 1346, 2789
MmeI TCCRAC 2 cut(s) 807, 1013
Mox20I TGGCCA 1 cut(s) 1979
MroI TCCGGA 2 cut(s) 1180, 2095
MroXI GAANNNNTTC 3 cut(s) 683, 1228, 2064
MscI TGGCCA 1 cut(s) 1979
MseI TTAA 9 cut(s) 318, 545, 555, 1041, 1245, 1686, 2265, 2481, 3184
MslI CAYNNNNRTG 1 cut(s) 2052
Msp20I TGGCCA 1 cut(s) 1979
MspA1I CMGCKG 1 cut(s) 1951
MspI CCGG 3 cut(s) 1181, 1961, 2096
MspR9I CCNGG 3 cut(s) 441, 729, 1098
MunI CAATTG 3 cut(s) 1529, 1751, 2775
Mva1269I GAATGC 1 cut(s) 1798
MvaI CCWGG 3 cut(s) 441, 729, 1098
MwoI GCNNNNNNNGC 5 cut(s) 1709, 1714, 2069, 3098, 3101
NdeI CATATG 1 cut(s) 1219
NlaIV GGNNCC 2 cut(s) 1014, 1959
NmuCI GTSAC 2 cut(s) 262, 2792
NsbI TGCGCA 1 cut(s) 872
NspI RCATGY 3 cut(s) 1808, 2240, 2861
PaeI GCATGC 1 cut(s) 2240
PaeR7I CTCGAG 1 cut(s) 2838
PagI TCATGA 1 cut(s) 217
PceI AGGCCT 2 cut(s) 842, 978
PciI ACATGT 1 cut(s) 2857
PcsI WCGNNNNNNNCGW 1 cut(s) 1700
PctI GAATGC 1 cut(s) 1798
PdmI GAANNNNTTC 3 cut(s) 683, 1228, 2064
PfeI GAWTC 7 cut(s) 364, 592, 1913, 1921, 2336, 2459, 3164
PinAI ACCGGT 1 cut(s) 1960
PkrI GCNGC 6 cut(s) 175, 334, 2773, 3079, 3094, 3103
PleI GAGTC 2 cut(s) 1345, 2789
PpsI GAGTC 2 cut(s) 1345, 2789
PpuMI RGGWCCY 1 cut(s) 3010
PscI ACATGT 1 cut(s) 2857
PshBI ATTAAT 3 cut(s) 318, 555, 1041
Psp124BI GAGCTC 2 cut(s) 2762, 2868
Psp5II RGGWCCY 1 cut(s) 3010
Psp6I CCWGG 3 cut(s) 439, 727, 1096
PspGI CCWGG 3 cut(s) 439, 727, 1096
PspN4I GGNNCC 2 cut(s) 1014, 1959
PspPI GGNCC 3 cut(s) 443, 1958, 3010
PspPPI RGGWCCY 1 cut(s) 3010
PspXI VCTCGAGB 1 cut(s) 2838
PstI CTGCAG 1 cut(s) 3106
PsuI RGATCY 2 cut(s) 1012, 1552
PvuII CAGCTG 1 cut(s) 1951
RsaI GTAC 5 cut(s) 425, 516, 947, 1591, 1757
RsaNI GTAC 5 cut(s) 424, 515, 946, 1590, 1756
RseI CAYNNNNRTG 1 cut(s) 2052
SacI GAGCTC 2 cut(s) 2762, 2868
SaqAI TTAA 9 cut(s) 318, 545, 555, 1041, 1245, 1686, 2265, 2481, 3184
SatI GCNGC 6 cut(s) 174, 333, 2772, 3078, 3093, 3102
Sau96I GGNCC 3 cut(s) 443, 1958, 3010
SchI GAGTC 2 cut(s) 1346, 2789
ScrFI CCNGG 3 cut(s) 441, 729, 1098
SduI GDGCHC 5 cut(s) 382, 1870, 2711, 2762, 2868
SexAI ACCWGGT 1 cut(s) 1096
SfaNI GCATC 5 cut(s) 1367, 2044, 2189, 2324, 2464
SfcI CTRYAG 1 cut(s) 3102
Sfr274I CTCGAG 1 cut(s) 2838
SinI GGWCC 2 cut(s) 1958, 3010
SlaI CTCGAG 1 cut(s) 2838
SmiMI CAYNNNNRTG 1 cut(s) 2052
SmlI CTYRAG 5 cut(s) 1170, 1494, 1556, 2799, 2838
SmoI CTYRAG 5 cut(s) 1170, 1494, 1556, 2799, 2838
SpeI ACTAGT 1 cut(s) 353
SphI GCATGC 1 cut(s) 2240
SseBI AGGCCT 2 cut(s) 842, 978
SsiI CCGC 4 cut(s) 332, 1414, 1717, 1909
SspI AATATT 3 cut(s) 259, 2290, 3136
SstI GAGCTC 2 cut(s) 2762, 2868
StuI AGGCCT 2 cut(s) 842, 978
StyD4I CCNGG 3 cut(s) 439, 727, 1096
StyI CCWWGG 3 cut(s) 117, 1644, 1980
TaaI ACNGT 4 cut(s) 210, 1083, 2143, 2535
TaiI ACGT 1 cut(s) 1606
TaqI TCGA 5 cut(s) 1058, 1694, 1846, 2839, 2862
TatI WGTACW 3 cut(s) 514, 1589, 1755
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 7 cut(s) 364, 592, 1913, 1921, 2336, 2459, 3164
Tru1I TTAA 9 cut(s) 318, 545, 555, 1041, 1245, 1686, 2265, 2481, 3184
Tru9I TTAA 9 cut(s) 318, 545, 555, 1041, 1245, 1686, 2265, 2481, 3184
TscAI CASTG 4 cut(s) 233, 538, 2711, 2826
TseFI GTSAC 2 cut(s) 262, 2792
TseI GCWGC 5 cut(s) 173, 2771, 3077, 3092, 3101
Tsp45I GTSAC 2 cut(s) 262, 2792
TspGWI ACGGA 2 cut(s) 758, 2780
TspRI CASTG 4 cut(s) 233, 538, 2711, 2826
VpaK11BI GGWCC 2 cut(s) 1958, 3010
VspI ATTAAT 3 cut(s) 318, 555, 1041
XapI RAATTY 8 cut(s) 148, 1541, 1682, 1849, 2491, 2553, 2691, 2734
XbaI TCTAGA 1 cut(s) 2302
XceI RCATGY 3 cut(s) 1808, 2240, 2861
XhoI CTCGAG 1 cut(s) 2838
XmiI GTMKAC 1 cut(s) 2420
XmnI GAANNNNTTC 3 cut(s) 683, 1228, 2064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.