Rorug07G0260700

Plant nuclear matrix protein 1 (NMP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000089
Physical Location & Seq
Forward (+)
24479003 .. 24488496
9494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0260700.1

Sequence Viewer

Length: 2022 bp
ATGGAGGACGAGGGATTAGAAGACTGGGACGACGCGGCTTTCGTCGAAGAACTCATCCAAGTACAAGAGCGCGTCATCTCCGATTCTCAGCCGCCGTTAAAACCTGAACCGCCGCCGTCCTCTTCGATTACCTACTCGCCTCCGCGCCACCTCTCCCAGCGCTCCAACGCCGTCTCCTCTTCCTCCGCATTGCCGCCGCGTGTTTGGACCTCCCAGAGGCCCGACAAGAATCCCGAAATTGGGCGCTTGAAGATGGCTGCTTCTTCTTCCGCATTGCCTCCTTGTGTTTCGGGCAACTCTGGATGTGATAAGGAACGCGAAATCGGGCGCTTGAAGATGGAGCTGGGGCATGTCTTGAAGCAGCTTTCAGATTATGAACAGGAGTGCTCAGAACTGAAGAAGGAAAGAGACAAAAAAGATGAACAGCTTCAGTTTGTACTCTCAAGGAATGAAAAGAAAGATGGAGCTGCTAGGAACTCTGATAGTGCAAATTTGGAATCTTCTGTACAATTACAAATGGCAAGAGGTGTGTCAACCTCTAAAGCCACAGGCGTTCAAACTGATGAAACTAGTGCTTCTGCCCAAGCAATCCATAATGATGACCAGCATATTTCTGATAACCTCTCCAAGAAATTGCTAGCTATCTGGGGATCTCCAAATGAACAAGAGTTGGGAAAAAATGTCATATCCAATTTGCTTATGGCATGCCAAACAGATTTCCATTCTCTTTCTGGGTGCATTGGCATGAATATATCCTCTAAACTGAGAATGGACACTGCAGGAGATGAAGGCTCTTGTATTGCAGCTTCACAGAATATGCACATATCTCGTAACCCAGAAGTTGCAAAAGTGTCTCATCTTTATTCTGTCTTGACCAAGATCAATAATGGAATGATAAAGTCGGATGCTCTGTTTCAACCACTAGTCGACCTCTGCAGTCTTAAAAATGTTATCATTGTCCAGGCATCTCTACATATACTACATGTGTTTCTTAAGCAACTTCTAAGTCTAGAAAGGCCAGTAGAAGGAAGGGTCAATGTCATGGTCGAGGGACTCGTAAGAAGGAATCAGACATCTTATGTGGACTCTCTTCCATTTGGAATGGATTTTTATGCTGAAACTGAAAGCAAGAGTGGAGATTGGAATAACGGTGTTGCAAATTTGGTTTCTCGCGTAGACTGGGTTTCACTTTTTGAGTTGATCGTACAAACTGCCATGAGGAATACAGAACACTGCCTAAGGCTACAAGCAGTCTCTATTATGAATGTCATTGTAATGAAAAGTAATGCTTTTATGGAGAGGGAAATGTTTGGCCGAACACCGGTGTTTGAAATGATCGCAAAATTGCTTGCAAAGGAAGCTGGTTTTGAGGTGCGAAAACAAGCCGTGCAACTTCTGTATATGCTGCTGAATTGTCCTAAAATGCTGGTTAAATTTTGTACCGGTTATAAAGGGGAGAAGGATGCTGGTGCTATGGATGAAAATGCAGGAGATGCTTTGACTTTTCAAAAGTACTGTATGATTCTTCAAGGATTGGCAGATTGTCTAGCTTGCTGTGGACACTGTCTAGAGGAGTTGATACTTTGCCGAAATGCTGTTCTTTTACTGGCTTTCCTAGCCTCATCTGGAATATCTGGCTTTGAAATACTTGCGAGTCACAAGCTGCTTCAAGATGCAAACTTTCTAATGTTAATATTACAAGTTTTGGCAGCAGAAGCAGATCAGACAGCAGTTAATACTAAGCAACAACATCAGCTTTACAAAGAAAGGACCTTGCTGATACGGGAGGCCCTGATATTGCTTAACAGATTGGCGTCAAACCCATCATATTCTGCAACTGTCCTGCATGTATTAACAAACAGCAGAGACATGGCCAGTTTGGCCATTGATGTTGCGAGCAGGTTGTCCCGGAAAGACCAGATATATGAGAAGTTTGATAGCAGGCCGGAATCTGATGTTGGTGACCTAGCTAGAGTCTTTAAGAAAAGGGTGTACACATATTTAGGTGATAACATATCCTAA

Protein Analysis

673

Amino Acids

74.63

Weight (kDa)

5.87

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1449
Acc36I ACCTGC 1 cut(s) 1890
AccI GTMKAC 2 cut(s) 927, 1176
AccII CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
AciI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 270
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 3 cut(s) 1312, 1872, 1881
AcsI RAATTY 3 cut(s) 490, 1159, 1433
AcuI CTGAAG 2 cut(s) 413, 416
AcyI GRCGYC 1 cut(s) 1814
AfaI GTAC 7 cut(s) 63, 438, 507, 1206, 1441, 1514, 1994
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1025, 1321
AflII CTTAAG 1 cut(s) 992
AflIII ACRYGT 1 cut(s) 982
AgeI ACCGGT 2 cut(s) 1321, 1442
AhlI ACTAGT 2 cut(s) 569, 922
AjnI CCWGG 1 cut(s) 960
AjuI GAANNNNNNNTTGG 2 cut(s) 1941, 1973
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 5 cut(s) 178, 402, 858, 1258, 1860
AlwI GGATC 1 cut(s) 658
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 7 cut(s) 218, 1016, 1312, 1788, 1872, 1881, 1943
ApeKI GCWGC 7 cut(s) 257, 361, 467, 803, 1405, 1663, 1709
ApoI RAATTY 3 cut(s) 490, 1159, 1433
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 2 cut(s) 1321, 1442
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 5 cut(s) 72, 147, 162, 246, 330
AspS9I GGNCC 4 cut(s) 207, 219, 1770, 1789
AsuC2I CCSGG 1 cut(s) 1909
AsuHPI GGTGA 2 cut(s) 1973, 2018
AsuNHI GCTAGC 1 cut(s) 637
AvaII GGWCC 2 cut(s) 207, 1770
AxyI CCTNAGG 1 cut(s) 1238
BalI TGGCCA 2 cut(s) 1874, 1883
BarI GAAGNNNNNNTAC 2 cut(s) 790, 822
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 7 cut(s) 244, 373, 454, 815, 1392, 1650, 1721
BccI CCATC 4 cut(s) 247, 331, 455, 1831
BceAI ACGGC 4 cut(s) 79, 100, 155, 1370
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 962
BcnI CCSGG 1 cut(s) 1909
BcoDI GTCTC 5 cut(s) 178, 402, 858, 1258, 1860
BcuI ACTAGT 2 cut(s) 569, 922
BfmI CTRYAG 2 cut(s) 777, 934
BfoI RGCGCY 3 cut(s) 163, 247, 331
BfrI CTTAAG 1 cut(s) 992
BfuAI ACCTGC 1 cut(s) 1890
BglI GCCNNNNNGGC 1 cut(s) 1880
BmcAI AGTACT 1 cut(s) 1514
Bme1390I CCNGG 2 cut(s) 962, 1909
Bme18I GGWCC 2 cut(s) 207, 1770
BmgT120I GGNCC 4 cut(s) 207, 219, 1770, 1789
BmrFI CCNGG 2 cut(s) 962, 1909
BmrI ACTGGG 2 cut(s) 34, 1189
BmsI GCATC 5 cut(s) 895, 974, 1453, 1483, 1663
BmtI GCTAGC 1 cut(s) 641
BmuI ACTGGG 2 cut(s) 34, 1189
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 1909
BsaHI GRCGYC 1 cut(s) 1814
BsaWI WCCGGW 2 cut(s) 1321, 1442
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1025, 1321
Bse118I RCCGGY 2 cut(s) 1321, 1442
Bse1I ACTGG 5 cut(s) 29, 1019, 1184, 1611, 1875
Bse21I CCTNAGG 1 cut(s) 1238
Bse3DI GCAATG 2 cut(s) 188, 272
BseBI CCWGG 1 cut(s) 962
BseGI GGATG 5 cut(s) 54, 308, 910, 1468, 1483
BseLI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1025, 1321
BseMI GCAATG 2 cut(s) 188, 272
BseMII CTCAG 3 cut(s) 101, 402, 755
BseNI ACTGG 5 cut(s) 29, 1019, 1184, 1611, 1875
BseRI GAGGAG 2 cut(s) 166, 1586
BseXI GCAGC 7 cut(s) 244, 373, 454, 815, 1392, 1650, 1721
BseYI CCCAGC 2 cut(s) 156, 343
Bsh1236I CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
BshFI GGCC 7 cut(s) 220, 1018, 1314, 1790, 1874, 1883, 1945
BshTI ACCGGT 2 cut(s) 1321, 1442
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 4 cut(s) 1322, 1443, 1909, 1946
BslFI GGGAC 3 cut(s) 41, 1065, 1891
BslI CCNNNNNNNGG 5 cut(s) 216, 239, 240, 1025, 1321
BsmAI GTCTC 5 cut(s) 178, 402, 858, 1258, 1860
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 3 cut(s) 41, 1065, 1891
BsnI GGCC 7 cut(s) 220, 1018, 1314, 1790, 1874, 1883, 1945
Bsp1286I GDGCHC 1 cut(s) 389
Bsp1407I TGTACA 2 cut(s) 505, 1992
Bsp143I GATC 5 cut(s) 650, 879, 1200, 1335, 1720
BspACI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 270
BspANI GGCC 7 cut(s) 220, 1018, 1314, 1790, 1874, 1883, 1945
BspCNI CTCAG 3 cut(s) 100, 401, 756
BspFNI CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
BspMAI CTGCAG 2 cut(s) 781, 938
BspMI ACCTGC 1 cut(s) 1890
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 992
BsrDI GCAATG 2 cut(s) 188, 272
BsrFI RCCGGY 2 cut(s) 1321, 1442
BsrGI TGTACA 2 cut(s) 505, 1992
BsrI ACTGG 5 cut(s) 29, 1019, 1184, 1611, 1875
BssAI RCCGGY 2 cut(s) 1321, 1442
BssMI GATC 5 cut(s) 650, 879, 1200, 1335, 1720
BssNI GRCGYC 1 cut(s) 1814
Bst2UI CCWGG 1 cut(s) 962
Bst4CI ACNGT 4 cut(s) 1151, 1517, 1565, 1840
Bst6I CTCTTC 3 cut(s) 127, 184, 1095
BstACI GRCGYC 1 cut(s) 1814
BstAFI CTTAAG 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 1493
BstAUI TGTACA 2 cut(s) 505, 1992
BstC8I GCNNGC 6 cut(s) 639, 706, 1350, 1552, 1897, 1943
BstDEI CTNAG 6 cut(s) 87, 388, 764, 1004, 1238, 1740
BstEII GGTNACC 1 cut(s) 1961
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 5 cut(s) 54, 308, 910, 1468, 1483
BstFNI CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
BstH2I RGCGCY 3 cut(s) 163, 247, 331
BstHHI GCGC 5 cut(s) 72, 147, 162, 246, 330
BstKTI GATC 5 cut(s) 653, 882, 1203, 1338, 1723
BstMAI GTCTC 5 cut(s) 178, 402, 858, 1258, 1860
BstMBI GATC 5 cut(s) 650, 879, 1200, 1335, 1720
BstMWI GCNNNNNNNGC 5 cut(s) 1358, 1493, 1616, 1715, 1880
BstNI CCWGG 1 cut(s) 962
BstNSI RCATGY 4 cut(s) 353, 708, 986, 1850
BstPI GGTNACC 1 cut(s) 1961
BstSCI CCNGG 2 cut(s) 960, 1907
BstSFI CTRYAG 2 cut(s) 777, 934
BstUI CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
BstV1I GCAGC 7 cut(s) 244, 373, 454, 815, 1392, 1650, 1721
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
Bsu36I CCTNAGG 1 cut(s) 1238
BsuRI GGCC 7 cut(s) 220, 1018, 1314, 1790, 1874, 1883, 1945
BtsCI GGATG 5 cut(s) 54, 308, 910, 1468, 1483
BtsI GCAGTG 2 cut(s) 774, 1231
BtsIMutI CAGTG 3 cut(s) 774, 1231, 1561
BveI ACCTGC 1 cut(s) 1890
Cac8I GCNNGC 6 cut(s) 639, 706, 1350, 1552, 1897, 1943
CfoI GCGC 5 cut(s) 72, 147, 162, 246, 330
Cfr10I RCCGGY 2 cut(s) 1321, 1442
Cfr13I GGNCC 4 cut(s) 207, 219, 1770, 1789
CseI GACGC 3 cut(s) 41, 61, 1803
Csp6I GTAC 7 cut(s) 62, 437, 506, 1205, 1440, 1513, 1993
CspAI ACCGGT 2 cut(s) 1321, 1442
CviAII CATG 8 cut(s) 350, 705, 745, 983, 1042, 1216, 1847, 1870
CviQI GTAC 7 cut(s) 62, 437, 506, 1205, 1440, 1513, 1993
DdeI CTNAG 6 cut(s) 87, 388, 764, 1004, 1238, 1740
DpnI GATC 5 cut(s) 652, 881, 1202, 1337, 1722
DpnII GATC 5 cut(s) 650, 879, 1200, 1335, 1720
EaeI YGGCCR 3 cut(s) 1312, 1872, 1881
Eam1104I CTCTTC 3 cut(s) 127, 184, 1095
EarI CTCTTC 3 cut(s) 127, 184, 1095
Eco47I GGWCC 2 cut(s) 207, 1770
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 413, 416
Eco81I CCTNAGG 1 cut(s) 1238
Eco91I GGTNACC 1 cut(s) 1961
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoO109I RGGNCCY 2 cut(s) 1770, 1789
EcoO65I GGTNACC 1 cut(s) 1961
EcoRII CCWGG 1 cut(s) 960
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 8 cut(s) 353, 708, 748, 986, 1045, 1219, 1850, 1873
FalI AAGNNNNNCTT 2 cut(s) 1273, 1305
FaqI GGGAC 3 cut(s) 41, 1065, 1891
FatI CATG 8 cut(s) 349, 704, 744, 982, 1041, 1215, 1846, 1869
FblI GTMKAC 2 cut(s) 927, 1176
FokI GGATG 5 cut(s) 41, 315, 917, 1475, 1490
GlaI GCGC 5 cut(s) 71, 146, 161, 245, 329
GsaI CCCAGC 2 cut(s) 160, 347
HaeII RGCGCY 3 cut(s) 163, 247, 331
HaeIII GGCC 7 cut(s) 220, 1018, 1314, 1790, 1874, 1883, 1945
HapII CCGG 4 cut(s) 1322, 1443, 1909, 1946
HgaI GACGC 3 cut(s) 41, 61, 1803
HhaI GCGC 5 cut(s) 72, 147, 162, 246, 330
Hin1I GRCGYC 1 cut(s) 1814
Hin1II CATG 8 cut(s) 353, 708, 748, 986, 1045, 1219, 1850, 1873
Hin6I GCGC 5 cut(s) 70, 145, 160, 244, 328
HinP1I GCGC 5 cut(s) 70, 145, 160, 244, 328
HincII GTYRAC 2 cut(s) 534, 928
HindII GTYRAC 2 cut(s) 534, 928
HpaII CCGG 4 cut(s) 1322, 1443, 1909, 1946
HphI GGTGA 2 cut(s) 1973, 2018
Hpy166II GTNNAC 7 cut(s) 534, 928, 1084, 1177, 1559, 1993, 1995
Hpy188I TCNGA 9 cut(s) 82, 370, 391, 481, 616, 904, 1071, 1725, 1954
Hpy188III TCNNGA 8 cut(s) 233, 300, 355, 871, 1010, 1568, 1626, 1670
Hpy8I GTNNAC 7 cut(s) 534, 928, 1084, 1177, 1559, 1993, 1995
Hpy99I CGWCG 2 cut(s) 35, 47
HpyAV CCTTC 6 cut(s) 394, 782, 1019, 1023, 1056, 1453
HpyCH4III ACNGT 4 cut(s) 1151, 1517, 1565, 1840
HpyF10VI GCNNNNNNNGC 5 cut(s) 1358, 1493, 1616, 1715, 1880
HpyF3I CTNAG 6 cut(s) 87, 388, 764, 1004, 1238, 1740
Hsp92I GRCGYC 1 cut(s) 1814
Hsp92II CATG 8 cut(s) 353, 708, 748, 986, 1045, 1219, 1850, 1873
HspAI GCGC 5 cut(s) 70, 145, 160, 244, 328
Kzo9I GATC 5 cut(s) 650, 879, 1200, 1335, 1720
LmnI GCTCC 3 cut(s) 167, 340, 464
Lsp1109I GCAGC 7 cut(s) 244, 373, 454, 815, 1392, 1650, 1721
LweI GCATC 5 cut(s) 895, 974, 1453, 1483, 1663
MaeIII GTNAC 3 cut(s) 830, 1655, 1961
MalI GATC 5 cut(s) 652, 881, 1202, 1337, 1722
MboI GATC 5 cut(s) 650, 879, 1200, 1335, 1720
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 1 cut(s) 389
MlsI TGGCCA 2 cut(s) 1874, 1883
MluCI AATT 9 cut(s) 237, 490, 509, 632, 691, 1159, 1343, 1411, 1433
MluNI TGGCCA 2 cut(s) 1874, 1883
MlyI GAGTC 4 cut(s) 1047, 1079, 1663, 1983
MmeI TCCRAC 2 cut(s) 189, 882
Mox20I TGGCCA 2 cut(s) 1874, 1883
MroXI GAANNNNTTC 1 cut(s) 426
MscI TGGCCA 2 cut(s) 1874, 1883
MseI TTAA 9 cut(s) 98, 942, 993, 1431, 1691, 1734, 1803, 1853, 1980
MslI CAYNNNNRTG 3 cut(s) 597, 743, 1274
Msp20I TGGCCA 2 cut(s) 1874, 1883
MspCI CTTAAG 1 cut(s) 992
MspI CCGG 4 cut(s) 1322, 1443, 1909, 1946
MspR9I CCNGG 2 cut(s) 962, 1909
MvaI CCWGG 1 cut(s) 962
MvnI CGCG 6 cut(s) 35, 72, 145, 199, 318, 1173
MwoI GCNNNNNNNGC 5 cut(s) 1358, 1493, 1616, 1715, 1880
NciI CCSGG 1 cut(s) 1909
NdeII GATC 5 cut(s) 650, 879, 1200, 1335, 1720
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 8 cut(s) 353, 708, 748, 986, 1045, 1219, 1850, 1873
NmuCI GTSAC 2 cut(s) 1655, 1961
NspI RCATGY 4 cut(s) 353, 708, 986, 1850
PaeI GCATGC 1 cut(s) 708
PciI ACATGT 1 cut(s) 982
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 1053
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 6 cut(s) 83, 229, 497, 1066, 1522, 1949
PflFI GACNNNGTC 1 cut(s) 1563
PfoI TCCNGGA 1 cut(s) 1907
PinAI ACCGGT 2 cut(s) 1321, 1442
PleI GAGTC 4 cut(s) 1047, 1079, 1662, 1982
PpsI GAGTC 4 cut(s) 1047, 1079, 1662, 1982
PpuMI RGGWCCY 1 cut(s) 1770
PscI ACATGT 1 cut(s) 982
PsiI TTATAA 1 cut(s) 1449
Psp5II RGGWCCY 1 cut(s) 1770
Psp6I CCWGG 1 cut(s) 960
PspEI GGTNACC 1 cut(s) 1961
PspFI CCCAGC 2 cut(s) 156, 343
PspGI CCWGG 1 cut(s) 960
PspPI GGNCC 4 cut(s) 207, 219, 1770, 1789
PspPPI RGGWCCY 1 cut(s) 1770
PstI CTGCAG 2 cut(s) 781, 938
PsuI RGATCY 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 1563
RsaI GTAC 7 cut(s) 63, 438, 507, 1206, 1441, 1514, 1994
RsaNI GTAC 7 cut(s) 62, 437, 506, 1205, 1440, 1513, 1993
RseI CAYNNNNRTG 3 cut(s) 597, 743, 1274
SalI GTCGAC 1 cut(s) 926
SaqAI TTAA 9 cut(s) 98, 942, 993, 1431, 1691, 1734, 1803, 1853, 1980
Sau3AI GATC 5 cut(s) 650, 879, 1200, 1335, 1720
Sau96I GGNCC 4 cut(s) 207, 219, 1770, 1789
ScaI AGTACT 1 cut(s) 1514
SchI GAGTC 4 cut(s) 1047, 1079, 1663, 1983
ScrFI CCNGG 2 cut(s) 962, 1909
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 5 cut(s) 895, 974, 1453, 1483, 1663
SfcI CTRYAG 2 cut(s) 777, 934
SfiI GGCCNNNNNGGCC 1 cut(s) 1880
SgrAI CRCCGGYG 1 cut(s) 1321
SinI GGWCC 2 cut(s) 207, 1770
SmiMI CAYNNNNRTG 3 cut(s) 597, 743, 1274
SmlI CTYRAG 2 cut(s) 442, 992
SmoI CTYRAG 2 cut(s) 442, 992
SpeI ACTAGT 2 cut(s) 569, 922
SphI GCATGC 1 cut(s) 708
Sse9I AATT 9 cut(s) 237, 490, 509, 632, 691, 1159, 1343, 1411, 1433
SsiI CCGC 9 cut(s) 35, 92, 110, 113, 143, 186, 194, 197, 270
SspI AATATT 1 cut(s) 1695
StyD4I CCNGG 2 cut(s) 960, 1907
TaaI ACNGT 4 cut(s) 1151, 1517, 1565, 1840
TaqI TCGA 4 cut(s) 45, 125, 927, 1047
TasI AATT 9 cut(s) 237, 490, 509, 632, 691, 1159, 1343, 1411, 1433
TatI WGTACW 5 cut(s) 61, 436, 505, 1512, 1992
TauI GCSGC 5 cut(s) 38, 94, 115, 196, 199
TfiI GAWTC 6 cut(s) 83, 229, 497, 1066, 1522, 1949
Tru1I TTAA 9 cut(s) 98, 942, 993, 1431, 1691, 1734, 1803, 1853, 1980
Tru9I TTAA 9 cut(s) 98, 942, 993, 1431, 1691, 1734, 1803, 1853, 1980
TscAI CASTG 3 cut(s) 781, 1238, 1568
TseFI GTSAC 2 cut(s) 1655, 1961
TseI GCWGC 7 cut(s) 257, 361, 467, 803, 1405, 1663, 1709
Tsp45I GTSAC 2 cut(s) 1655, 1961
TspRI CASTG 3 cut(s) 781, 1238, 1568
Tth111I GACNNNGTC 1 cut(s) 1563
Vha464I CTTAAG 1 cut(s) 992
VpaK11BI GGWCC 2 cut(s) 207, 1770
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 3 cut(s) 490, 1159, 1433
XbaI TCTAGA 2 cut(s) 1009, 1567
XceI RCATGY 4 cut(s) 353, 708, 986, 1850
XcmI CCANNNNNNNNNTGG 2 cut(s) 697, 728
XmiI GTMKAC 2 cut(s) 927, 1176
XmnI GAANNNNTTC 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.