Rmu_sc0011363.1_g000002

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011363.1
Physical Location & Seq
Forward (+)
4260 .. 5402
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011363.1_g000002.1.cds

Sequence Viewer

Length: 813 bp
atgcaaaatgaggaagataaaaatgcgcaaaatgggtctcaagttgacaagacttctccagtgagtatgagccccaaatctctagacaagtgcaagcttttagattggtgtggaatggatgagattgtagccgaaggacgttggtgttccagtgatccgaatgagcttgtcaatcatactcctcttggacctaatgcaatgaaagtgagggtagatattccaaacaaaccagaagcttttctttggaggcctacacctaatatgagttgtatggaacaagctcaaagtaagacaatagcgtggccagctgataaagtggtcttgcaaatcagtcagcaatctaagaatgaagataatatatctatgccttcgagtaaaaacatgaattctatcaagtgcaagttgttcaattggagtggaaaagaggaaatagttgctgaaggtcgttggttctctaatactccaaagatgcttgttaatgatattcctctcgtacctaatgccatgatagtttgggttgatgttcaaacatgtcctgaagcatttttatggagacctacgcctaacatgacatatattgaagatgctattggcactaaagtagcatggcctgctaacaaagttgttttggaaaatagtccatacattgaggaagttggaaacctatcatctcctttgagtgtgaacaacaactccaagaaaaagtgcaacttgttagattttagtggttccggaaaaatagttgcagaaggacattggtcttcaagtgatccaggcgagcttgttcattttgttcctttaggtcctaatgct

Protein Analysis

271

Amino Acids

30.07

Weight (kDa)

5.23

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 731
AclWI GGATC 2 cut(s) 149, 764
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 459, 558
AfaI GTAC 1 cut(s) 495
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 4 cut(s) 409, 527, 581, 765
AjnI CCWGG 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 6 cut(s) 97, 166, 236, 281, 308, 781
AluI AGCT 6 cut(s) 97, 166, 236, 281, 308, 781
Alw26I GTCTC 2 cut(s) 42, 547
AlwI GGATC 2 cut(s) 149, 764
Aor13HI TCCGGA 1 cut(s) 731
AoxI GGCC 3 cut(s) 248, 302, 608
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 188, 803
AvaII GGWCC 2 cut(s) 188, 803
BalI TGGCCA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 753
BciT130I CCWGG 1 cut(s) 774
BcoDI GTCTC 2 cut(s) 42, 547
BfaI CTAG 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 2 cut(s) 188, 803
BmgT120I GGNCC 2 cut(s) 188, 803
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 459, 574
BoxI GACNNNNGTC 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 753
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 42, 547
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bse1I ACTGG 2 cut(s) 59, 150
Bse3DI GCAATG 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 731
BseBI CCWGG 1 cut(s) 774
BseGI GGATG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 59, 150
BseRI GAGGAG 1 cut(s) 171
BshFI GGCC 3 cut(s) 250, 304, 610
BsiSI CCGG 1 cut(s) 732
BsmAI GTCTC 2 cut(s) 42, 547
BsnI GGCC 3 cut(s) 250, 304, 610
Bso31I GGTCTC 2 cut(s) 42, 547
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 731
Bsp143I GATC 2 cut(s) 154, 769
BspANI GGCC 3 cut(s) 250, 304, 610
BspEI TCCGGA 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 730
BspPI GGATC 2 cut(s) 149, 764
BspTNI GGTCTC 2 cut(s) 42, 547
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 2 cut(s) 59, 150
BssMI GATC 2 cut(s) 154, 769
Bst2UI CCWGG 1 cut(s) 774
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 4 cut(s) 95, 306, 612, 779
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 157, 772
BstMAI GTCTC 2 cut(s) 42, 547
BstMBI GATC 2 cut(s) 154, 769
BstMWI GCNNNNNNNGC 2 cut(s) 305, 611
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 1 cut(s) 534
BstPAI GACNNNNGTC 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 753
BsuRI GGCC 3 cut(s) 250, 304, 610
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 66, 157
Cac8I GCNNGC 4 cut(s) 95, 306, 612, 779
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 188, 803
Csp6I GTAC 1 cut(s) 494
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 5 cut(s) 382, 505, 531, 568, 606
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 156, 771
DpnII GATC 2 cut(s) 154, 769
EaeI YGGCCR 1 cut(s) 302
Eco147I AGGCCT 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 74
Eco31I GGTCTC 2 cut(s) 42, 547
Eco47I GGWCC 2 cut(s) 188, 803
Eco57I CTGAAG 2 cut(s) 459, 558
EcoO109I RGGNCCY 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 5 cut(s) 385, 508, 534, 571, 609
FalI AAGNNNNNCTT 4 cut(s) 225, 257, 695, 727
FatI CATG 5 cut(s) 381, 504, 530, 567, 605
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 74
FspBI CTAG 1 cut(s) 83
FspI TGCGCA 1 cut(s) 27
GlaI GCGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 3 cut(s) 250, 304, 610
HapII CCGG 1 cut(s) 732
HhaI GCGC 1 cut(s) 28
Hin1II CATG 5 cut(s) 385, 508, 534, 571, 609
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 2 cut(s) 95, 234
HpaII CCGG 1 cut(s) 732
Hpy166II GTNNAC 2 cut(s) 46, 685
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 83, 536, 732
Hpy8I GTNNAC 2 cut(s) 46, 685
HpyAV CCTTC 4 cut(s) 128, 378, 434, 743
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 7 cut(s) 4, 93, 197, 325, 399, 708, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 611
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 5 cut(s) 385, 508, 534, 571, 609
HspAI GCGC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 731
Kzo9I GATC 2 cut(s) 154, 769
LpnPI CCDG 9 cut(s) 72, 163, 243, 318, 549, 624, 745, 759, 786
LweI GCATC 2 cut(s) 459, 574
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 139
MalI GATC 2 cut(s) 156, 771
MboI GATC 2 cut(s) 154, 769
MboII GAAGA 4 cut(s) 26, 362, 593, 753
MfeI CAATTG 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 2 cut(s) 385, 409
MluNI TGGCCA 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 7 cut(s) 4, 192, 201, 240, 418, 498, 643
Mox20I TGGCCA 1 cut(s) 304
MroI TCCGGA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 237
MscI TGGCCA 1 cut(s) 304
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 547
Msp20I TGGCCA 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 1 cut(s) 774
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 774
MwoI GCNNNNNNNGC 2 cut(s) 305, 611
NdeII GATC 2 cut(s) 154, 769
NlaIII CATG 5 cut(s) 385, 508, 534, 571, 609
NlaIV GGNNCC 1 cut(s) 730
NsbI TGCGCA 1 cut(s) 27
NspI RCATGY 1 cut(s) 534
PceI AGGCCT 1 cut(s) 250
PciI ACATGT 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 237
PpuMI RGGWCCY 1 cut(s) 803
PscI ACATGT 1 cut(s) 530
PshAI GACNNNNGTC 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 772
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 2 cut(s) 188, 803
PspPPI RGGWCCY 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 547
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 2 cut(s) 154, 769
Sau96I GGNCC 2 cut(s) 188, 803
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 2 cut(s) 459, 574
SinI GGWCC 2 cut(s) 188, 803
SmiMI CAYNNNNRTG 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 2 cut(s) 385, 409
SseBI AGGCCT 1 cut(s) 250
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 772
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 371
TasI AATT 2 cut(s) 385, 409
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 66, 157
TspDTI ATGAA 4 cut(s) 215, 363, 398, 776
TspRI CASTG 2 cut(s) 66, 157
VpaK11BI GGWCC 2 cut(s) 188, 803
XapI RAATTY 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.