Rh3CG365600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000089
Physical Location & Seq
Reverse (-)
45962055 .. 45964878
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG365600.1

Sequence Viewer

Length: 1965 bp
ATGTTGAGTGATATTACAAAGGCAGGTCGCAGTAAGAGGAAGCATACTAAGGAAACCGGTGGAATATCACAAGACTTTGATGCAAGGGATGTGAATCACATGGCAGGTCTCCAAGAAGTACATACACAAGTTAGTAAAGAAGCTTCCCGCCAAGATGGACCAATTCCAAGTAATGATAGTTCTGAACAAGATGCGGTCCAAGAAAATGCATCTGTACAAGATACAGTTGAAGATCCAAGAGGATTGAAAAAGAAAAGAGGTCCAACCAAAATCAAGAAAGTTGCTATGGACCCTGAGAGTCGGATTCAAGTTCAATTTAATAGCTTGGGTGAACCATATGGAGAGGGGTTAGTAAGCTTGTCATCTTTTTTGGGCCCTCTTGTACGAGAGCATGTACCTGTGATGACCTTAAAGTACCATTATGGGAAGAAGTTCAGATTAGTTCGTCAAATACAAGCAGCAAAGAACAAACAAGAAAGACTTCGGCTCAAACCAGACAACATACCAACTTTAGCAATTTGGAAGAAGTTTGTCAAGACAAAAACAAGTCCAACATTTAAGGCTATAAGTGACAAGTACAAGGCATTGAGGCGTAAACAAGTACCACACACATGCAGTCGCAAGGGAATGGTTCGATTAGCAGCTGATATGAAAAGAGATAGTACCAACCCATCTTCAGTGTCAAGGGTTAAAGTTTGGATCAAATCTCGCACAAAAAAAGATGGTACACCTGTGAATACAGCAGTTGGTGAAACTATTGAGAAGTTAAGAGAAGTTGAAAGTAATTCACCCTCATCCTCAACAACTAATGTGAGAGAAGATGCTCTTTCCCAAGTATTAGGACAAGATAAACCTGGACGATTAAGAGGAATGGGAAGAGGAGTTACTATAAGCAAATTAGCCTTCTTACAGTCTAGGGACAAGCATGTGCTCCAGCTAGAAGAGCAACACACTGATATGCGAAGTAGAATCAAGCATTTGGAGAGCTTAGTCCATAAATTAATTGGACATCATGAGACAATGCAAAATGAGGAAGATAAAAATGAGCAAAATTGGTCTCAAGTTGACAAGACTTCTCGAGTGAGTATGAGCCTCAAATCTCTAGACAAGTGCAAGCTATTAGATTGGTGTGGAATGGATGAGATTGTAGCCGAAGGACGTTGGTGTTCCAGTGATCCGAATGAGCTTGTCAATCATACTCCTCTTGGACCTAATGCAATGAAAGTGAGGGTAGATATTCCAAACAAACCAGAAGCTTTTCTTTGGAGGCCTACACCTAATATGAGTTGTATGGAACAAGCTCAAGGTAAGACAATAGCGTGGCCAGCTGATAAAGTGGTCTTGCAAATCAGTCAGCAATCTGAGAATGAAGATAATATATCTATGCCTTCGAGTAAAAACATGAATTCTATCAAGTGCAAGTTGTTCAATTGGAGTGGAAAAGAGGAAATAGTTGCTGAAGGTCGTTGGTTCTCTAATGATCCAAAGATGCTTGTTAATGATATTCCTCTCGGACCTAATGCCATGATAGTTTGGGTTGATATCCCAACATGTCCTGAAGCATTTTTATGGAGACCTACGCCTAACATGACATATATTGAAGATGTTATTGGCACTAAAGTAGCATGGCCTGCTAACAAAGTTGTTTTGGAAAATAGTCCAAACATTGAGGAAGTTGGAAACCTATCATCTCCTTCGAGTGTGAACAAAAACTCCAAGAAAAAGTGCAACTTGTTAGATTTTAGTGGTTCGGGAAAAATAGTTGCAGAAGGACATTGGTCTTCAAGTGATCCAGGCGAGCTTGTTCATTTTGTTCCTTTAGGTCCTAATGCTACGAGAGTTTGGGTTGATATCCCAAGGGTTCCTACTACATCTCTTTGGAGGCCAACATCTGAGCTACATTGTAATGAAGATGCTATTGGTACTACAATAGCTTGGCCATCTAACAAAGTTGTTATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_23 Transposase_24

Protein Analysis

654

Amino Acids

73.3

Weight (kDa)

9.27

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 173 - 296 6.3e-22 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 573 - 652 8.6e-06 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 14, 95
AciI CCGC 2 cut(s) 148, 194
AclWI GGATC 5 cut(s) 227, 707, 1169, 1475, 1784
AcoI YGGCCR 2 cut(s) 1322, 1937
AcsI RAATTY 1 cut(s) 1405
AcuI CTGAAG 3 cut(s) 660, 1479, 1578
AflIII ACRYGT 1 cut(s) 1550
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 8 cut(s) 230, 247, 308, 314, 779, 1429, 1601, 1785
AjnI CCWGG 2 cut(s) 853, 1792
AjuI GAANNNNNNNTTGG 4 cut(s) 1593, 1625, 1902, 1934
AloI GAACNNNNNNTCC 2 cut(s) 1697, 1729
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 4 cut(s) 113, 1010, 1062, 1567
AlwI GGATC 5 cut(s) 227, 707, 1169, 1475, 1784
Ama87I CYCGRG 1 cut(s) 1077
AoxI GGCC 6 cut(s) 373, 1268, 1322, 1628, 1883, 1937
ApaI GGGCCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 458, 641
ApoI RAATTY 1 cut(s) 1405
AseI ATTAAT 1 cut(s) 1001
AsiGI ACCGGT 1 cut(s) 56
Asp700I GAANNNNTTC 3 cut(s) 431, 480, 1257
AspS9I GGNCC 9 cut(s) 158, 196, 260, 289, 373, 374, 1208, 1514, 1823
AsuHPI GGTGA 3 cut(s) 341, 761, 780
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 7 cut(s) 158, 196, 260, 289, 1208, 1514, 1823
BaeGI GKGCMC 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BalI TGGCCA 2 cut(s) 1324, 1939
BanII GRGCYC 1 cut(s) 377
BarI GAAGNNNNNNTAC 4 cut(s) 127, 159, 868, 900
BbsI GAAGAC 1 cut(s) 1773
Bbv12I GWGCWC 1 cut(s) 933
BbvI GCAGC 2 cut(s) 470, 653
BccI CCATC 4 cut(s) 149, 679, 716, 1948
BciT130I CCWGG 2 cut(s) 855, 1794
BcoDI GTCTC 4 cut(s) 113, 1010, 1062, 1567
BfaI CTAG 3 cut(s) 915, 938, 1103
BfuAI ACCTGC 2 cut(s) 14, 95
BisI GCNGC 2 cut(s) 459, 642
BlsI GCNGC 2 cut(s) 460, 643
Bme1390I CCNGG 2 cut(s) 855, 1794
Bme18I GGWCC 7 cut(s) 158, 196, 260, 289, 1208, 1514, 1823
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 9 cut(s) 158, 196, 260, 289, 373, 374, 1208, 1514, 1823
BmiI GGNNCC 3 cut(s) 291, 375, 1863
BmrFI CCNGG 2 cut(s) 855, 1794
BmsI GCATC 6 cut(s) 70, 181, 218, 811, 1479, 1903
BoxI GACNNNNGTC 1 cut(s) 1777
BpiI GAAGAC 1 cut(s) 1773
BpmI CTGGAG 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 1044, 1287
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 3 cut(s) 113, 1062, 1567
BsaJI CCNNGG 1 cut(s) 1856
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 1697, 1727
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 1170
Bse3DI GCAATG 1 cut(s) 1224
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 855, 1794
BseDI CCNNGG 1 cut(s) 1856
BseGI GGATG 3 cut(s) 94, 794, 1144
BseJI GATNNNNATC 1 cut(s) 93
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 3 cut(s) 285, 1353, 1884
BseNI ACTGG 1 cut(s) 1170
BseRI GAGGAG 2 cut(s) 894, 1191
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 470, 653
BshFI GGCC 6 cut(s) 375, 1270, 1324, 1630, 1885, 1939
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 933
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 932
BsmAI GTCTC 4 cut(s) 113, 1010, 1062, 1567
BsmFI GGGAC 1 cut(s) 932
BsnI GGCC 6 cut(s) 375, 1270, 1324, 1630, 1885, 1939
Bso31I GGTCTC 3 cut(s) 113, 1062, 1567
BsoBI CYCGRG 1 cut(s) 1077
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 377, 933
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 5 cut(s) 232, 699, 1174, 1480, 1789
BspACI CCGC 2 cut(s) 148, 194
BspANI GGCC 6 cut(s) 375, 1270, 1324, 1630, 1885, 1939
BspCNI CTCAG 3 cut(s) 286, 1354, 1885
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 3 cut(s) 291, 375, 1863
BspMI ACCTGC 2 cut(s) 14, 95
BspPI GGATC 5 cut(s) 227, 707, 1169, 1475, 1784
BspQI GCTCTTC 1 cut(s) 936
BspTNI GGTCTC 3 cut(s) 113, 1062, 1567
BsrDI GCAATG 1 cut(s) 1224
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 214
BsrI ACTGG 1 cut(s) 1170
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 1856
BssMI GATC 5 cut(s) 232, 699, 1174, 1480, 1789
BssT1I CCWWGG 1 cut(s) 1856
Bst2UI CCWGG 2 cut(s) 855, 1794
Bst4CI ACNGT 2 cut(s) 226, 912
Bst6I CTCTTC 2 cut(s) 871, 936
BstAPI GCANNNNNTGC 1 cut(s) 1631
BstAUI TGTACA 1 cut(s) 214
BstC8I GCNNGC 4 cut(s) 1115, 1326, 1632, 1799
BstDEI CTNAG 5 cut(s) 48, 294, 988, 1362, 1893
BstF5I GGATG 3 cut(s) 94, 794, 1144
BstKTI GATC 5 cut(s) 235, 702, 1177, 1483, 1792
BstMAI GTCTC 4 cut(s) 113, 1010, 1062, 1567
BstMBI GATC 5 cut(s) 232, 699, 1174, 1480, 1789
BstMWI GCNNNNNNNGC 3 cut(s) 943, 1325, 1631
BstNI CCWGG 2 cut(s) 855, 1794
BstNSI RCATGY 4 cut(s) 395, 615, 929, 1554
BstPAI GACNNNNGTC 1 cut(s) 1777
BstSCI CCNGG 2 cut(s) 853, 1792
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 470, 653
BstV2I GAAGAC 1 cut(s) 1773
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 6 cut(s) 375, 1270, 1324, 1630, 1885, 1939
BtsCI GGATG 3 cut(s) 94, 794, 1144
BtsIMutI CAGTG 3 cut(s) 684, 951, 1177
BveI ACCTGC 2 cut(s) 14, 95
Cac8I GCNNGC 4 cut(s) 1115, 1326, 1632, 1799
CciI TCATGA 1 cut(s) 1012
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 9 cut(s) 158, 196, 260, 289, 373, 374, 1208, 1514, 1823
CspAI ACCGGT 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 1417, 1452
DdeI CTNAG 5 cut(s) 48, 294, 988, 1362, 1893
DpnI GATC 5 cut(s) 234, 701, 1176, 1482, 1791
DpnII GATC 5 cut(s) 232, 699, 1174, 1480, 1789
EaeI YGGCCR 2 cut(s) 1322, 1937
Eam1104I CTCTTC 2 cut(s) 871, 936
EarI CTCTTC 2 cut(s) 871, 936
Eco130I CCWWGG 1 cut(s) 1856
Eco147I AGGCCT 1 cut(s) 1270
Eco24I GRGCYC 1 cut(s) 377
Eco31I GGTCTC 3 cut(s) 113, 1062, 1567
Eco32I GATATC 2 cut(s) 1543, 1852
Eco47I GGWCC 7 cut(s) 158, 196, 260, 289, 1208, 1514, 1823
Eco57I CTGAAG 3 cut(s) 660, 1479, 1578
Eco88I CYCGRG 1 cut(s) 1077
EcoO109I RGGNCCY 2 cut(s) 374, 1823
EcoRI GAATTC 1 cut(s) 1405
EcoRII CCWGG 2 cut(s) 853, 1792
EcoRV GATATC 2 cut(s) 1543, 1852
EcoT14I CCWWGG 1 cut(s) 1856
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 1856
FalI AAGNNNNNCTT 8 cut(s) 465, 497, 810, 842, 1245, 1277, 1715, 1747
FaqI GGGAC 1 cut(s) 932
FauI CCCGC 1 cut(s) 155
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 459, 642
FokI GGATG 3 cut(s) 101, 781, 1151
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 459, 642
FspBI CTAG 3 cut(s) 915, 938, 1103
GluI GCNGC 2 cut(s) 459, 642
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 6 cut(s) 375, 1270, 1324, 1630, 1885, 1939
HapII CCGG 1 cut(s) 57
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 3 cut(s) 141, 355, 1254
HinfI GANTC 4 cut(s) 94, 298, 304, 969
HpaII CCGG 1 cut(s) 57
HphI GGTGA 3 cut(s) 341, 761, 780
Hpy166II GTNNAC 5 cut(s) 332, 596, 728, 1066, 1705
Hpy188I TCNGA 7 cut(s) 184, 303, 437, 1179, 1363, 1514, 1894
Hpy188III TCNNGA 7 cut(s) 274, 535, 1013, 1077, 1103, 1556, 1752
Hpy8I GTNNAC 5 cut(s) 332, 596, 728, 1066, 1705
HpyAV CCTTC 6 cut(s) 913, 1148, 1398, 1454, 1704, 1763
HpyCH4III ACNGT 2 cut(s) 226, 912
HpyCH4IV ACGT 1 cut(s) 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 943, 1325, 1631
HpyF3I CTNAG 5 cut(s) 48, 294, 988, 1362, 1893
HpySE526I ACGT 1 cut(s) 1159
Kzo9I GATC 5 cut(s) 232, 699, 1174, 1480, 1789
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 1 cut(s) 936
Lsp1109I GCAGC 2 cut(s) 470, 653
LweI GCATC 6 cut(s) 70, 181, 218, 811, 1479, 1903
MaeI CTAG 3 cut(s) 915, 938, 1103
MaeII ACGT 1 cut(s) 1159
MaeIII GTNAC 2 cut(s) 569, 883
MalI GATC 5 cut(s) 234, 701, 1176, 1482, 1791
MboI GATC 5 cut(s) 232, 699, 1174, 1480, 1789
MfeI CAATTG 1 cut(s) 1429
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 377, 933
MlsI TGGCCA 2 cut(s) 1324, 1939
MluNI TGGCCA 2 cut(s) 1324, 1939
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 4 cut(s) 281, 287, 575, 1657
Mox20I TGGCCA 2 cut(s) 1324, 1939
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 3 cut(s) 431, 480, 1257
MscI TGGCCA 2 cut(s) 1324, 1939
MseI TTAA 8 cut(s) 318, 410, 558, 690, 767, 863, 1001, 1497
MslI CAYNNNNRTG 4 cut(s) 610, 956, 1567, 1905
Msp20I TGGCCA 2 cut(s) 1324, 1939
MspA1I CMGCKG 2 cut(s) 644, 1328
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 855, 1794
MunI CAATTG 1 cut(s) 1429
MvaI CCWGG 2 cut(s) 855, 1794
MwoI GCNNNNNNNGC 3 cut(s) 943, 1325, 1631
NdeI CATATG 1 cut(s) 337
NdeII GATC 5 cut(s) 232, 699, 1174, 1480, 1789
NlaIV GGNNCC 3 cut(s) 291, 375, 1863
NmuCI GTSAC 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 4 cut(s) 395, 615, 929, 1554
PaeR7I CTCGAG 1 cut(s) 1077
PagI TCATGA 1 cut(s) 1012
PceI AGGCCT 1 cut(s) 1270
PciI ACATGT 1 cut(s) 1550
PciSI GCTCTTC 1 cut(s) 936
PdmI GAANNNNTTC 3 cut(s) 431, 480, 1257
PfeI GAWTC 3 cut(s) 94, 304, 969
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 2 cut(s) 460, 643
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 1823
PscI ACATGT 1 cut(s) 1550
PshAI GACNNNNGTC 1 cut(s) 1777
PshBI ATTAAT 1 cut(s) 1001
Psp5II RGGWCCY 1 cut(s) 1823
Psp6I CCWGG 2 cut(s) 853, 1792
PspGI CCWGG 2 cut(s) 853, 1792
PspN4I GGNNCC 3 cut(s) 291, 375, 1863
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 9 cut(s) 158, 196, 260, 289, 373, 374, 1208, 1514, 1823
PspPPI RGGWCCY 1 cut(s) 1823
PsrI GAACNNNNNNTAC 2 cut(s) 163, 195
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 644, 1328
RseI CAYNNNNRTG 4 cut(s) 610, 956, 1567, 1905
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 8 cut(s) 318, 410, 558, 690, 767, 863, 1001, 1497
SatI GCNGC 2 cut(s) 459, 642
Sau3AI GATC 5 cut(s) 232, 699, 1174, 1480, 1789
Sau96I GGNCC 9 cut(s) 158, 196, 260, 289, 373, 374, 1208, 1514, 1823
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 2 cut(s) 855, 1794
SduI GDGCHC 2 cut(s) 377, 933
SfaNI GCATC 6 cut(s) 70, 181, 218, 811, 1479, 1903
Sfr274I CTCGAG 1 cut(s) 1077
SinI GGWCC 7 cut(s) 158, 196, 260, 289, 1208, 1514, 1823
SlaI CTCGAG 1 cut(s) 1077
SmiMI CAYNNNNRTG 4 cut(s) 610, 956, 1567, 1905
SmlI CTYRAG 3 cut(s) 1059, 1077, 1302
SmoI CTYRAG 3 cut(s) 1059, 1077, 1302
SseBI AGGCCT 1 cut(s) 1270
SsiI CCGC 2 cut(s) 148, 194
SspMI CTAG 3 cut(s) 915, 938, 1103
StuI AGGCCT 1 cut(s) 1270
StyD4I CCNGG 2 cut(s) 853, 1792
StyI CCWWGG 1 cut(s) 1856
TaaI ACNGT 2 cut(s) 226, 912
TaiI ACGT 1 cut(s) 1162
TaqI TCGA 4 cut(s) 634, 1078, 1391, 1697
TatI WGTACW 3 cut(s) 118, 214, 576
TfiI GAWTC 3 cut(s) 94, 304, 969
Tru1I TTAA 8 cut(s) 318, 410, 558, 690, 767, 863, 1001, 1497
Tru9I TTAA 8 cut(s) 318, 410, 558, 690, 767, 863, 1001, 1497
TscAI CASTG 3 cut(s) 684, 958, 1177
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 458, 641
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 665, 1235, 1383, 1418, 1796, 1923
TspRI CASTG 3 cut(s) 684, 958, 1177
VpaK11BI GGWCC 7 cut(s) 158, 196, 260, 289, 1208, 1514, 1823
VspI ATTAAT 1 cut(s) 1001
XapI RAATTY 1 cut(s) 1405
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 4 cut(s) 395, 615, 929, 1554
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XhoI CTCGAG 1 cut(s) 1077
XmnI GAANNNNTTC 3 cut(s) 431, 480, 1257
XspI CTAG 3 cut(s) 915, 938, 1103
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.