Rh5CG513400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000089
Physical Location & Seq
Reverse (-)
71639916 .. 71642272
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG513400.1

Sequence Viewer

Length: 1149 bp
ATGGAAACAGTGAAAAAAAGAGGCAGAACCGGATATACAGAAGATGCACGTGCTAGACAGCCAGATGATTGTTCAGAATCAAATCTTGAAGTTGAGCTTACTCCTAATCCTGCTAACAATGGAAAAAAGGTTGTAAGAGGTAAAACTACATTACAGGTCATTCCAACGGGGGAATCTAATCGACAGTTTGTTGAGTGGAATGAAAGAGGACAACCTGTTGGGGAATTTTCAAAAAGGTTTAGCTCAACTATTGGGGTTTTAGTAAGAGAGAGTGTCCCGATCAACATACAAAATTGGCCTGCTGTGGATGGTGTAACTAAGAATAGTGTCTGGGGTCTTTTGATGCAAAAATATGAAGTGGATCTGACTCATAAGACATTTATCTTACAACAAATGGGAAGGCTATGGAGAGCTTGGAAATCTGATCTCTCGACTAACATCAAAAGAATTGTAGATACTAGACGCACTAAGTCAGAAACTACAAGGCTACTTGGCATTCTGAAGCCCTCTGATGTGCCACAAAAAGAGTGGGATGAGTTCGTGGCAGAACGTAGTTCAGAGTCATGGCAAGAAAAGAGTGAGAAAATGAAAAAAATAAGAGCAAATCAGACTTTAACACACACAATGAGCCGAAAAGGTTATGCAAGGTTGGAAGATGAATATAAAAAGGAAAATCCTGGAAAATCATTGAGTAGGGCAGAATTATGGATTAAAGGACACGAGCAGAAGAAGTCAAAAAATGAGCATGTGGCTGCCAAAATTATTGAAATACAAGCTAAACTTGATGCGCAACCACCTAGTGAAGGGCGTATTCCGATAAAATATGATACACTAAGTCAGGTTCTTGGTAAGGAGCGTCCTGGCCGTGTTAGAGGTTTGGGATCAGGGGTTACACCTTCAAAGGTAGATGCTCAACTAGAAAGTAGCTCATGGAAACAAACATTAGAGAATAAAATTGATGCAATGAGTGAGCGCACAAAGATTCTGGAGGATATAATTTTAAAGATGAGCCAAAATGGGAATGGTGATGGTGGTGGTGGTGATGGTGAAAATATGCATGCTGATTCTGTTAGTACTCCACAAGTAAGAATTTGGTGCATTCCACTTTGTTACTTAGAATATGGTTTACACTTTTATATACTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

382

Amino Acids

43.37

Weight (kDa)

9.29

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 175 - 299 3.6e-18 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 789
AclWI GGATC 2 cut(s) 369, 889
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 2 cut(s) 224, 1089
AcuI CTGAAG 1 cut(s) 521
AcvI CACGTG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 1 cut(s) 1075
AfiI CCNNNNNNNGG 1 cut(s) 803
AgsI TTSAA 4 cut(s) 89, 231, 767, 900
AjnI CCWGG 2 cut(s) 676, 859
AluBI AGCT 5 cut(s) 97, 243, 413, 776, 927
AluI AGCT 5 cut(s) 97, 243, 413, 776, 927
AlwI GGATC 2 cut(s) 369, 889
AoxI GGCC 2 cut(s) 296, 862
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 224, 1089
AspLEI GCGC 2 cut(s) 790, 975
AsuHPI GGTGA 3 cut(s) 1037, 1052, 1058
BauI CACGAG 1 cut(s) 719
BbrPI CACGTG 1 cut(s) 50
BbvI GCAGC 1 cut(s) 739
BccI CCATC 3 cut(s) 302, 1022, 1037
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 2 cut(s) 678, 861
BfaI CTAG 4 cut(s) 54, 459, 798, 917
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
BmcAI AGTACT 1 cut(s) 1075
Bme1390I CCNGG 2 cut(s) 678, 861
BmrFI CCNGG 2 cut(s) 678, 861
BmsI GCATC 5 cut(s) 34, 333, 775, 898, 949
BpmI CTGGAG 1 cut(s) 1007
BsaAI YACGTR 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 2 cut(s) 678, 861
BseGI GGATG 2 cut(s) 313, 538
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMI GCAATG 1 cut(s) 969
BseXI GCAGC 1 cut(s) 739
BshFI GGCC 2 cut(s) 298, 864
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 2 cut(s) 495, 1098
BsnI GGCC 2 cut(s) 298, 864
Bsp143I GATC 4 cut(s) 279, 361, 424, 881
BspANI GGCC 2 cut(s) 298, 864
BspPI GGATC 2 cut(s) 369, 889
BsrDI GCAATG 1 cut(s) 969
BssMI GATC 4 cut(s) 279, 361, 424, 881
BssSI CACGAG 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 719
Bst2UI CCWGG 2 cut(s) 678, 861
Bst4CI ACNGT 2 cut(s) 10, 186
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 300, 1059
BstDEI CTNAG 4 cut(s) 318, 468, 833, 1114
BstENI CCTNNNNNAGG 1 cut(s) 801
BstF5I GGATG 2 cut(s) 313, 538
BstHHI GCGC 2 cut(s) 790, 975
BstKTI GATC 4 cut(s) 282, 364, 427, 884
BstMBI GATC 4 cut(s) 279, 361, 424, 881
BstNI CCWGG 2 cut(s) 678, 861
BstNSI RCATGY 2 cut(s) 749, 1061
BstSCI CCNGG 2 cut(s) 676, 859
BstV1I GCAGC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 298, 864
BtsCI GGATG 2 cut(s) 313, 538
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 300, 1059
CfoI GCGC 2 cut(s) 790, 975
CseI GACGC 2 cut(s) 471, 845
Csp6I GTAC 1 cut(s) 1074
CspCI CAANNNNNGTGG 2 cut(s) 509, 544
CviAII CATG 4 cut(s) 564, 746, 930, 1058
CviQI GTAC 1 cut(s) 1074
DdeI CTNAG 4 cut(s) 318, 468, 833, 1114
DpnI GATC 4 cut(s) 281, 363, 426, 883
DpnII GATC 4 cut(s) 279, 361, 424, 881
DraI TTTAAA 1 cut(s) 1002
DraIII CACNNNGTG 1 cut(s) 800
EaeI YGGCCR 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 521
Eco72I CACGTG 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoRII CCWGG 2 cut(s) 676, 859
EcoT22I ATGCAT 1 cut(s) 1059
FaeI CATG 4 cut(s) 567, 749, 933, 1061
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 765, 797
FaqI GGGAC 1 cut(s) 260
FatI CATG 4 cut(s) 563, 745, 929, 1057
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 2 cut(s) 320, 545
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 4 cut(s) 54, 459, 798, 917
FspI TGCGCA 1 cut(s) 789
GlaI GCGC 2 cut(s) 789, 974
GluI GCNGC 1 cut(s) 753
GsuI CTGGAG 1 cut(s) 1007
HaeIII GGCC 2 cut(s) 298, 864
HapII CCGG 1 cut(s) 30
HgaI GACGC 2 cut(s) 471, 845
HhaI GCGC 2 cut(s) 790, 975
Hin1II CATG 4 cut(s) 567, 749, 933, 1061
Hin6I GCGC 2 cut(s) 788, 973
HinP1I GCGC 2 cut(s) 788, 973
HinfI GANTC 6 cut(s) 77, 173, 367, 560, 982, 1064
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 1037, 1052, 1058
Hpy166II GTNNAC 1 cut(s) 1127
Hpy188III TCNNGA 4 cut(s) 86, 277, 430, 986
Hpy8I GTNNAC 1 cut(s) 1127
HpyAV CCTTC 3 cut(s) 393, 797, 906
HpyCH4III ACNGT 2 cut(s) 10, 186
HpyCH4IV ACGT 2 cut(s) 49, 550
HpyCH4V TGCA 6 cut(s) 47, 346, 644, 962, 1057, 1098
HpyF3I CTNAG 4 cut(s) 318, 468, 833, 1114
HpySE526I ACGT 2 cut(s) 49, 550
Hsp92II CATG 4 cut(s) 567, 749, 933, 1061
HspAI GCGC 2 cut(s) 788, 973
Kzo9I GATC 4 cut(s) 279, 361, 424, 881
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 5 cut(s) 34, 333, 775, 898, 949
MaeI CTAG 4 cut(s) 54, 459, 798, 917
MaeII ACGT 2 cut(s) 49, 550
MaeIII GTNAC 3 cut(s) 313, 889, 1109
MalI GATC 4 cut(s) 281, 363, 426, 883
MboI GATC 4 cut(s) 279, 361, 424, 881
MboII GAAGA 3 cut(s) 53, 665, 739
MflI RGATCY 1 cut(s) 361
MluCI AATT 8 cut(s) 224, 292, 447, 701, 759, 954, 996, 1089
MlyI GAGTC 2 cut(s) 361, 569
MmeI TCCRAC 2 cut(s) 188, 630
MnlI CCTC 6 cut(s) 14, 131, 200, 517, 866, 982
Mph1103I ATGCAT 1 cut(s) 1059
MseI TTAA 3 cut(s) 614, 711, 1001
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 678, 861
Mva1269I GAATGC 2 cut(s) 495, 1098
MvaI CCWGG 2 cut(s) 678, 861
NdeII GATC 4 cut(s) 279, 361, 424, 881
NlaIII CATG 4 cut(s) 567, 749, 933, 1061
NsbI TGCGCA 1 cut(s) 789
NsiI ATGCAT 1 cut(s) 1059
NspI RCATGY 2 cut(s) 749, 1061
PaeI GCATGC 1 cut(s) 1061
PctI GAATGC 2 cut(s) 495, 1098
PfeI GAWTC 4 cut(s) 77, 173, 982, 1064
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 2 cut(s) 361, 568
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 2 cut(s) 361, 568
Ppu21I YACGTR 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 676, 859
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 2 cut(s) 676, 859
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 1075
RsaNI GTAC 1 cut(s) 1074
SaqAI TTAA 3 cut(s) 614, 711, 1001
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 4 cut(s) 279, 361, 424, 881
ScaI AGTACT 1 cut(s) 1075
SchI GAGTC 2 cut(s) 361, 569
ScrFI CCNGG 2 cut(s) 678, 861
SfaNI GCATC 5 cut(s) 34, 333, 775, 898, 949
SphI GCATGC 1 cut(s) 1061
Sse9I AATT 8 cut(s) 224, 292, 447, 701, 759, 954, 996, 1089
SspMI CTAG 4 cut(s) 54, 459, 798, 917
StyD4I CCNGG 2 cut(s) 676, 859
TaaI ACNGT 2 cut(s) 10, 186
TaiI ACGT 2 cut(s) 52, 553
TaqI TCGA 2 cut(s) 181, 431
TasI AATT 8 cut(s) 224, 292, 447, 701, 759, 954, 996, 1089
TatI WGTACW 1 cut(s) 1073
TfiI GAWTC 4 cut(s) 77, 173, 982, 1064
Tru1I TTAA 3 cut(s) 614, 711, 1001
Tru9I TTAA 3 cut(s) 614, 711, 1001
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 752
TspDTI ATGAA 4 cut(s) 216, 369, 602, 672
TspRI CASTG 1 cut(s) 15
XagI CCTNNNNNAGG 1 cut(s) 801
XapI RAATTY 2 cut(s) 224, 1089
XceI RCATGY 2 cut(s) 749, 1061
XcmI CCANNNNNNNNNTGG 2 cut(s) 525, 1019
XspI CTAG 4 cut(s) 54, 459, 798, 917
ZrmI AGTACT 1 cut(s) 1075
Zsp2I ATGCAT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.