DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 110 - 178 | 4.5e-08 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 163 |
| AclWI | GGATC | 2 cut(s) | 362, 375 |
| AcsI | RAATTY | 1 cut(s) | 166 |
| AcvI | CACGTG | 1 cut(s) | 391 |
| AfaI | GTAC | 3 cut(s) | 94, 502, 524 |
| AgsI | TTSAA | 3 cut(s) | 34, 221, 323 |
| AhlI | ACTAGT | 1 cut(s) | 95 |
| AluBI | AGCT | 3 cut(s) | 196, 449, 532 |
| AluI | AGCT | 3 cut(s) | 196, 449, 532 |
| AlwI | GGATC | 2 cut(s) | 362, 375 |
| AoxI | GGCC | 2 cut(s) | 400, 512 |
| ApeKI | GCWGC | 1 cut(s) | 241 |
| ApoI | RAATTY | 1 cut(s) | 166 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 344, 376 |
| AspLEI | GCGC | 1 cut(s) | 121 |
| AspS9I | GGNCC | 3 cut(s) | 270, 382, 400 |
| AvaII | GGWCC | 2 cut(s) | 270, 382 |
| BamHI | GGATCC | 1 cut(s) | 367 |
| BbrPI | CACGTG | 1 cut(s) | 391 |
| BbvI | GCAGC | 1 cut(s) | 228 |
| BccI | CCATC | 1 cut(s) | 393 |
| BclI | TGATCA | 1 cut(s) | 289 |
| BcuI | ACTAGT | 1 cut(s) | 95 |
| BfaI | CTAG | 2 cut(s) | 96, 533 |
| BfmI | CTRYAG | 1 cut(s) | 242 |
| BisI | GCNGC | 1 cut(s) | 242 |
| BlsI | GCNGC | 1 cut(s) | 243 |
| BmcAI | AGTACT | 1 cut(s) | 94 |
| Bme18I | GGWCC | 2 cut(s) | 270, 382 |
| BmgT120I | GGNCC | 3 cut(s) | 270, 382, 400 |
| BmiI | GGNNCC | 1 cut(s) | 369 |
| BmrI | ACTGGG | 1 cut(s) | 186 |
| BmuI | ACTGGG | 1 cut(s) | 186 |
| BpuEI | CTTGAG | 3 cut(s) | 196, 377, 477 |
| BsaAI | YACGTR | 1 cut(s) | 391 |
| BsaJI | CCNNGG | 2 cut(s) | 85, 273 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 321, 351 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| Bse3DI | GCAATG | 1 cut(s) | 384 |
| BseDI | CCNNGG | 2 cut(s) | 85, 273 |
| BseMI | GCAATG | 1 cut(s) | 384 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseXI | GCAGC | 1 cut(s) | 228 |
| BshFI | GGCC | 2 cut(s) | 402, 514 |
| BsmI | GAATGC | 1 cut(s) | 106 |
| BsnI | GGCC | 2 cut(s) | 402, 514 |
| Bsp143I | GATC | 3 cut(s) | 21, 289, 367 |
| Bsp19I | CCATGG | 1 cut(s) | 85 |
| BspACI | CCGC | 1 cut(s) | 163 |
| BspANI | GGCC | 2 cut(s) | 402, 514 |
| BspLI | GGNNCC | 1 cut(s) | 369 |
| BspMAI | CTGCAG | 1 cut(s) | 246 |
| BspPI | GGATC | 2 cut(s) | 362, 375 |
| BsrDI | GCAATG | 1 cut(s) | 384 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssECI | CCNNGG | 2 cut(s) | 85, 273 |
| BssMI | GATC | 3 cut(s) | 21, 289, 367 |
| BssT1I | CCWWGG | 2 cut(s) | 85, 273 |
| Bst6I | CTCTTC | 1 cut(s) | 327 |
| BstBAI | YACGTR | 1 cut(s) | 391 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 482 |
| BstDSI | CCRYGG | 1 cut(s) | 85 |
| BstHHI | GCGC | 1 cut(s) | 121 |
| BstKTI | GATC | 3 cut(s) | 24, 292, 370 |
| BstMBI | GATC | 3 cut(s) | 21, 289, 367 |
| BstSFI | CTRYAG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 1 cut(s) | 228 |
| BstX2I | RGATCY | 1 cut(s) | 367 |
| BstYI | RGATCY | 1 cut(s) | 367 |
| BsuRI | GGCC | 2 cut(s) | 402, 514 |
| BtgI | CCRYGG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CfoI | GCGC | 1 cut(s) | 121 |
| Cfr13I | GGNCC | 3 cut(s) | 270, 382, 400 |
| Csp6I | GTAC | 3 cut(s) | 93, 501, 523 |
| CviAII | CATG | 2 cut(s) | 86, 510 |
| CviJI | RGCY | 7 cut(s) | 196, 241, 402, 449, 491, 514, 532 |
| CviKI_1 | RGCY | 7 cut(s) | 196, 241, 402, 449, 491, 514, 532 |
| CviQI | GTAC | 3 cut(s) | 93, 501, 523 |
| DdeI | CTNAG | 1 cut(s) | 482 |
| DpnI | GATC | 3 cut(s) | 23, 291, 369 |
| DpnII | GATC | 3 cut(s) | 21, 289, 367 |
| Eam1104I | CTCTTC | 1 cut(s) | 327 |
| EarI | CTCTTC | 1 cut(s) | 327 |
| Eco130I | CCWWGG | 2 cut(s) | 85, 273 |
| Eco47I | GGWCC | 2 cut(s) | 270, 382 |
| Eco72I | CACGTG | 1 cut(s) | 391 |
| EcoRI | GAATTC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 2 cut(s) | 85, 273 |
| ErhI | CCWWGG | 2 cut(s) | 85, 273 |
| FaeI | CATG | 2 cut(s) | 89, 513 |
| FaiI | YATR | 5 cut(s) | 87, 294, 446, 488, 511 |
| FatI | CATG | 2 cut(s) | 85, 509 |
| FbaI | TGATCA | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 1 cut(s) | 242 |
| FspBI | CTAG | 2 cut(s) | 96, 533 |
| GlaI | GCGC | 1 cut(s) | 120 |
| GluI | GCNGC | 1 cut(s) | 242 |
| HaeIII | GGCC | 2 cut(s) | 402, 514 |
| HhaI | GCGC | 1 cut(s) | 121 |
| Hin1II | CATG | 2 cut(s) | 89, 513 |
| Hin6I | GCGC | 1 cut(s) | 119 |
| HinP1I | GCGC | 1 cut(s) | 119 |
| HinfI | GANTC | 1 cut(s) | 359 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 372 |
| Hpy188III | TCNNGA | 1 cut(s) | 428 |
| HpyAV | CCTTC | 1 cut(s) | 254 |
| HpyCH4IV | ACGT | 1 cut(s) | 390 |
| HpyCH4V | TGCA | 6 cut(s) | 244, 266, 344, 350, 377, 509 |
| HpyF3I | CTNAG | 1 cut(s) | 482 |
| HpySE526I | ACGT | 1 cut(s) | 390 |
| Hsp92II | CATG | 2 cut(s) | 89, 513 |
| HspAI | GCGC | 1 cut(s) | 119 |
| Ksp22I | TGATCA | 1 cut(s) | 289 |
| Kzo9I | GATC | 3 cut(s) | 21, 289, 367 |
| LpnPI | CCDG | 3 cut(s) | 96, 162, 383 |
| Lsp1109I | GCAGC | 1 cut(s) | 228 |
| MaeI | CTAG | 2 cut(s) | 96, 533 |
| MaeII | ACGT | 1 cut(s) | 390 |
| MalI | GATC | 3 cut(s) | 23, 291, 369 |
| MboI | GATC | 3 cut(s) | 21, 289, 367 |
| MboII | GAAGA | 1 cut(s) | 344 |
| MfeI | CAATTG | 1 cut(s) | 504 |
| MflI | RGATCY | 1 cut(s) | 367 |
| MluCI | AATT | 3 cut(s) | 166, 313, 504 |
| MlyI | GAGTC | 1 cut(s) | 368 |
| MmeI | TCCRAC | 3 cut(s) | 25, 392, 395 |
| MnlI | CCTC | 7 cut(s) | 31, 67, 176, 229, 328, 405, 433 |
| MseI | TTAA | 2 cut(s) | 282, 311 |
| MunI | CAATTG | 1 cut(s) | 504 |
| Mva1269I | GAATGC | 1 cut(s) | 106 |
| NcoI | CCATGG | 1 cut(s) | 85 |
| NdeII | GATC | 3 cut(s) | 21, 289, 367 |
| NlaIII | CATG | 2 cut(s) | 89, 513 |
| NlaIV | GGNNCC | 1 cut(s) | 369 |
| PctI | GAATGC | 1 cut(s) | 106 |
| PkrI | GCNGC | 1 cut(s) | 243 |
| PleI | GAGTC | 1 cut(s) | 367 |
| PmaCI | CACGTG | 1 cut(s) | 391 |
| PmlI | CACGTG | 1 cut(s) | 391 |
| PpsI | GAGTC | 1 cut(s) | 367 |
| Ppu21I | YACGTR | 1 cut(s) | 391 |
| PspCI | CACGTG | 1 cut(s) | 391 |
| PspN4I | GGNNCC | 1 cut(s) | 369 |
| PspPI | GGNCC | 3 cut(s) | 270, 382, 400 |
| PstI | CTGCAG | 1 cut(s) | 246 |
| PsuI | RGATCY | 1 cut(s) | 367 |
| RsaI | GTAC | 3 cut(s) | 94, 502, 524 |
| RsaNI | GTAC | 3 cut(s) | 93, 501, 523 |
| SaqAI | TTAA | 2 cut(s) | 282, 311 |
| SatI | GCNGC | 1 cut(s) | 242 |
| Sau3AI | GATC | 3 cut(s) | 21, 289, 367 |
| Sau96I | GGNCC | 3 cut(s) | 270, 382, 400 |
| ScaI | AGTACT | 1 cut(s) | 94 |
| SchI | GAGTC | 1 cut(s) | 368 |
| SetI | ASST | 7 cut(s) | 42, 198, 265, 339, 393, 451, 534 |
| SfcI | CTRYAG | 1 cut(s) | 242 |
| SinI | GGWCC | 2 cut(s) | 270, 382 |
| SmlI | CTYRAG | 3 cut(s) | 211, 356, 492 |
| SmoI | CTYRAG | 3 cut(s) | 211, 356, 492 |
| SpeI | ACTAGT | 1 cut(s) | 95 |
| Sse9I | AATT | 3 cut(s) | 166, 313, 504 |
| SsiI | CCGC | 1 cut(s) | 163 |
| SspMI | CTAG | 2 cut(s) | 96, 533 |
| StyI | CCWWGG | 2 cut(s) | 85, 273 |
| TaiI | ACGT | 1 cut(s) | 393 |
| TaqI | TCGA | 2 cut(s) | 24, 457 |
| TasI | AATT | 3 cut(s) | 166, 313, 504 |
| TatI | WGTACW | 3 cut(s) | 92, 500, 522 |
| Tru1I | TTAA | 2 cut(s) | 282, 311 |
| Tru9I | TTAA | 2 cut(s) | 282, 311 |
| TseI | GCWGC | 1 cut(s) | 241 |
| TspGWI | ACGGA | 1 cut(s) | 76 |
| VpaK11BI | GGWCC | 2 cut(s) | 270, 382 |
| XapI | RAATTY | 1 cut(s) | 166 |
| XspI | CTAG | 2 cut(s) | 96, 533 |
| ZrmI | AGTACT | 1 cut(s) | 94 |