Rorug01G0071800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
11728374 .. 11731821
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0071800.1

Sequence Viewer

Length: 675 bp
ATGGGTTCCCGTGAAGCGAATATGGCAGCTCATACGACAGCCTCGCTTGGAAATTGGTCGGTGGGTCTCACCAGATGGGGCACTAGGTCACCACCAGCCTTGACTATGACCCAGAGACGCAAACTTGCTCAGTACCAACAACAGCTTGAGGTTGTAATTGAAGCAGAAAAGCAAGTTGCAAGGGACTTGATTCGTGAAAAGAAAAAGGAAAGAGCATTGTTAGCATTAAAGAAGAAAAAGGCACAAGAAGAATTATTAAAGCAAGTAGATACCTGGGTTATTAATGTTGAGCAACAGCTGCAAGATATTGAACTAACAAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGGCCGGTAATAATACAATTAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGATGAAGCAAAAGCTTACCAAGATGAAATTAATGCAATCTTGGGGGAGAAATTATCAACAGAAGATGAAGAGGAAATTTTAGCAGAATTTGAGAACTTGGAAGCTCATATCACTATTCAAGATCTGCCTGAAGCACCTTCTTCAGTGCCATCCCTTCAAGAAAATGAGAAGTTAGACCTTCCAAACGTGCCAACCAAAGCACCAGTTTCTGCTAAGAGTATAGTTATGGAGGAACCGGTGTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

224

Amino Acids

25.13

Weight (kDa)

4.87

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 37 - 209 4.8e-39 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 501, 512
AcuI CTGAAG 2 cut(s) 552, 576
AfaI GTAC 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 661
AgsI TTSAA 6 cut(s) 161, 311, 349, 407, 545, 584
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 8 cut(s) 29, 145, 298, 332, 374, 412, 440, 530
AluI AGCT 8 cut(s) 29, 145, 298, 332, 374, 412, 440, 530
Alw26I GTCTC 2 cut(s) 71, 109
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 26, 298
ApoI RAATTY 2 cut(s) 501, 512
AseI ATTAAT 2 cut(s) 282, 456
AsiGI ACCGGT 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 61, 81
BaeGI GKGCMC 1 cut(s) 83
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BbvI GCAGC 2 cut(s) 38, 285
BccI CCATC 2 cut(s) 69, 583
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 71, 109
BfaI CTAG 1 cut(s) 84
BglII AGATCT 1 cut(s) 547
BisI GCNGC 2 cut(s) 27, 299
BlsI GCNGC 2 cut(s) 28, 300
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 7, 660
BmrFI CCNGG 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 167, 416
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 661
Bse118I RCCGGY 2 cut(s) 353, 661
Bse1I ACTGG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 406, 424, 575
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 38, 285
BshFI GGCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 661
BsiSI CCGG 2 cut(s) 354, 662
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 71, 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 387, 547
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 7, 660
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 353, 661
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 2 cut(s) 353, 661
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 387, 547
Bst2UI CCWGG 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 129, 639
BstEII GGTNACC 1 cut(s) 87
BstF5I GGATG 3 cut(s) 406, 424, 575
BstKTI GATC 2 cut(s) 390, 550
BstMAI GTCTC 2 cut(s) 71, 109
BstMBI GATC 2 cut(s) 387, 547
BstMWI GCNNNNNNNGC 3 cut(s) 23, 221, 298
BstNI CCWGG 1 cut(s) 274
BstPI GGTNACC 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 38, 285
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 3 cut(s) 406, 424, 575
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 635
Cfr10I RCCGGY 2 cut(s) 353, 661
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 661
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 129, 639
DpnI GATC 2 cut(s) 389, 549
DpnII GATC 2 cut(s) 387, 547
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 2 cut(s) 552, 576
Eco91I GGTNACC 1 cut(s) 87
EcoO65I GGTNACC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 109
FaiI YATR 7 cut(s) 23, 33, 107, 377, 534, 647, 653
FaqI GGGAC 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 27, 299
FokI GGATG 3 cut(s) 413, 431, 562
Fsp4HI GCNGC 2 cut(s) 27, 299
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 27, 299
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 354, 662
HgaI GACGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 1 cut(s) 190
HpaII CCGG 2 cut(s) 354, 662
HphI GGTGA 2 cut(s) 61, 81
Hpy188III TCNNGA 3 cut(s) 194, 545, 584
HpyAV CCTTC 4 cut(s) 343, 573, 590, 614
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 3 cut(s) 179, 301, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 221, 298
HpyF3I CTNAG 2 cut(s) 129, 639
HpySE526I ACGT 1 cut(s) 612
Kzo9I GATC 2 cut(s) 387, 547
LpnPI CCDG 8 cut(s) 85, 108, 125, 259, 286, 367, 567, 642
Lsp1109I GCAGC 2 cut(s) 38, 285
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 87
MalI GATC 2 cut(s) 389, 549
MboI GATC 2 cut(s) 387, 547
MboII GAAGA 5 cut(s) 244, 260, 500, 506, 558
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 8 cut(s) 52, 156, 251, 366, 453, 476, 501, 512
MnlI CCTC 5 cut(s) 52, 142, 391, 490, 649
MseI TTAA 5 cut(s) 227, 257, 282, 369, 456
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 354, 662
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 23, 221, 298
NdeII GATC 2 cut(s) 387, 547
NlaIV GGNNCC 2 cut(s) 7, 660
NmuCI GTSAC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 661
PkrI GCNGC 2 cut(s) 28, 300
PshBI ATTAAT 2 cut(s) 282, 456
Psp6I CCWGG 1 cut(s) 272
PspEI GGTNACC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 7, 660
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 5 cut(s) 227, 257, 282, 369, 456
SatI GCNGC 2 cut(s) 27, 299
Sau3AI GATC 2 cut(s) 387, 547
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 146, 395
SmoI CTYRAG 2 cut(s) 146, 395
Sse9I AATT 8 cut(s) 52, 156, 251, 366, 453, 476, 501, 512
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 615
TasI AATT 8 cut(s) 52, 156, 251, 366, 453, 476, 501, 512
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 5 cut(s) 227, 257, 282, 369, 456
Tru9I TTAA 5 cut(s) 227, 257, 282, 369, 456
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 2 cut(s) 26, 298
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 3 cut(s) 444, 465, 507
TspRI CASTG 1 cut(s) 576
VspI ATTAAT 2 cut(s) 282, 456
XapI RAATTY 2 cut(s) 501, 512
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.