DNA-directed 5'-3' RNA polymerase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF8039 | PF26133 | 253 - 321 | 3.3e-07 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 48 |
| AciI | CCGC | 1 cut(s) | 404 |
| AclWI | GGATC | 2 cut(s) | 791, 804 |
| AcoI | YGGCCR | 1 cut(s) | 829 |
| AcsI | RAATTY | 2 cut(s) | 391, 592 |
| AcuI | CTGAAG | 4 cut(s) | 101, 405, 441, 462 |
| AcvI | CACGTG | 1 cut(s) | 820 |
| AfaI | GTAC | 1 cut(s) | 931 |
| AgsI | TTSAA | 5 cut(s) | 104, 438, 452, 460, 650 |
| AluBI | AGCT | 5 cut(s) | 161, 338, 476, 547, 878 |
| AluI | AGCT | 5 cut(s) | 161, 338, 476, 547, 878 |
| Alw26I | GTCTC | 3 cut(s) | 124, 275, 601 |
| AlwI | GGATC | 2 cut(s) | 791, 804 |
| AoxI | GGCC | 2 cut(s) | 829, 941 |
| ApoI | RAATTY | 2 cut(s) | 391, 592 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 773, 805 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspS9I | GGNCC | 2 cut(s) | 699, 811 |
| AsuHPI | GGTGA | 1 cut(s) | 229 |
| AvaII | GGWCC | 2 cut(s) | 699, 811 |
| BalI | TGGCCA | 1 cut(s) | 831 |
| BamHI | GGATCC | 1 cut(s) | 796 |
| BbrPI | CACGTG | 1 cut(s) | 820 |
| BccI | CCATC | 3 cut(s) | 147, 748, 822 |
| BclI | TGATCA | 1 cut(s) | 718 |
| BcoDI | GTCTC | 3 cut(s) | 124, 275, 601 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| Bme18I | GGWCC | 2 cut(s) | 699, 811 |
| BmgT120I | GGNCC | 2 cut(s) | 699, 811 |
| BmiI | GGNNCC | 1 cut(s) | 798 |
| BmsI | GCATC | 2 cut(s) | 255, 316 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 904, 936 |
| BpmI | CTGGAG | 1 cut(s) | 297 |
| BpuEI | CTTGAG | 3 cut(s) | 625, 806, 906 |
| Bsa29I | ATCGAT | 1 cut(s) | 19 |
| BsaAI | YACGTR | 1 cut(s) | 820 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaI | GGTCTC | 2 cut(s) | 275, 601 |
| BsaJI | CCNNGG | 3 cut(s) | 53, 511, 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 750, 780 |
| Bse3DI | GCAATG | 1 cut(s) | 813 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseCI | ATCGAT | 1 cut(s) | 19 |
| BseDI | CCNNGG | 3 cut(s) | 53, 511, 702 |
| BseGI | GGATG | 1 cut(s) | 158 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseMI | GCAATG | 1 cut(s) | 813 |
| BseMII | CTCAG | 2 cut(s) | 594, 902 |
| BshFI | GGCC | 2 cut(s) | 831, 943 |
| BshVI | ATCGAT | 1 cut(s) | 19 |
| BsmAI | GTCTC | 3 cut(s) | 124, 275, 601 |
| BsnI | GGCC | 2 cut(s) | 831, 943 |
| Bso31I | GGTCTC | 2 cut(s) | 275, 601 |
| Bsp143I | GATC | 3 cut(s) | 9, 718, 796 |
| Bsp19I | CCATGG | 2 cut(s) | 53, 511 |
| BspACI | CCGC | 1 cut(s) | 404 |
| BspANI | GGCC | 2 cut(s) | 831, 943 |
| BspCNI | CTCAG | 2 cut(s) | 595, 903 |
| BspDI | ATCGAT | 1 cut(s) | 19 |
| BspLI | GGNNCC | 1 cut(s) | 798 |
| BspPI | GGATC | 2 cut(s) | 791, 804 |
| BspTNI | GGTCTC | 2 cut(s) | 275, 601 |
| BsrDI | GCAATG | 1 cut(s) | 813 |
| BssECI | CCNNGG | 3 cut(s) | 53, 511, 702 |
| BssMI | GATC | 3 cut(s) | 9, 718, 796 |
| BssT1I | CCWWGG | 3 cut(s) | 53, 511, 702 |
| Bst4CI | ACNGT | 1 cut(s) | 626 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstBAI | YACGTR | 1 cut(s) | 820 |
| BstC8I | GCNNGC | 2 cut(s) | 587, 620 |
| BstDEI | CTNAG | 2 cut(s) | 603, 911 |
| BstDSI | CCRYGG | 2 cut(s) | 53, 511 |
| BstF5I | GGATG | 1 cut(s) | 158 |
| BstKTI | GATC | 3 cut(s) | 12, 721, 799 |
| BstMAI | GTCTC | 3 cut(s) | 124, 275, 601 |
| BstMBI | GATC | 3 cut(s) | 9, 718, 796 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 305, 335, 412, 482 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstX2I | RGATCY | 1 cut(s) | 796 |
| BstYI | RGATCY | 1 cut(s) | 796 |
| Bsu15I | ATCGAT | 1 cut(s) | 19 |
| BsuRI | GGCC | 2 cut(s) | 831, 943 |
| BsuTUI | ATCGAT | 1 cut(s) | 19 |
| BtgI | CCRYGG | 2 cut(s) | 53, 511 |
| BtsCI | GGATG | 1 cut(s) | 158 |
| BtsI | GCAGTG | 1 cut(s) | 529 |
| BtsIMutI | CAGTG | 2 cut(s) | 154, 529 |
| Cac8I | GCNNGC | 2 cut(s) | 587, 620 |
| Cfr13I | GGNCC | 2 cut(s) | 699, 811 |
| ClaI | ATCGAT | 1 cut(s) | 19 |
| Csp6I | GTAC | 1 cut(s) | 930 |
| CviAII | CATG | 5 cut(s) | 54, 317, 512, 833, 939 |
| CviQI | GTAC | 1 cut(s) | 930 |
| DdeI | CTNAG | 2 cut(s) | 603, 911 |
| DpnI | GATC | 3 cut(s) | 11, 720, 798 |
| DpnII | GATC | 3 cut(s) | 9, 718, 796 |
| EaeI | YGGCCR | 1 cut(s) | 829 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| EciI | GGCGGA | 1 cut(s) | 393 |
| Eco130I | CCWWGG | 3 cut(s) | 53, 511, 702 |
| Eco31I | GGTCTC | 2 cut(s) | 275, 601 |
| Eco47I | GGWCC | 2 cut(s) | 699, 811 |
| Eco57I | CTGAAG | 4 cut(s) | 101, 405, 441, 462 |
| Eco72I | CACGTG | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 3 cut(s) | 53, 511, 702 |
| ErhI | CCWWGG | 3 cut(s) | 53, 511, 702 |
| FaeI | CATG | 5 cut(s) | 57, 320, 515, 836, 942 |
| FatI | CATG | 5 cut(s) | 53, 316, 511, 832, 938 |
| FauNDI | CATATG | 2 cut(s) | 135, 411 |
| FbaI | TGATCA | 1 cut(s) | 718 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| FokI | GGATG | 1 cut(s) | 165 |
| GsuI | CTGGAG | 1 cut(s) | 297 |
| HaeIII | GGCC | 2 cut(s) | 831, 943 |
| Hin1II | CATG | 5 cut(s) | 57, 320, 515, 836, 942 |
| HincII | GTYRAC | 1 cut(s) | 530 |
| HindII | GTYRAC | 1 cut(s) | 530 |
| HinfI | GANTC | 6 cut(s) | 92, 220, 380, 448, 599, 788 |
| HphI | GGTGA | 1 cut(s) | 229 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 530, 629 |
| Hpy188I | TCNGA | 6 cut(s) | 199, 225, 385, 598, 604, 753 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 276, 857 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 530, 629 |
| HpyAV | CCTTC | 4 cut(s) | 208, 282, 380, 683 |
| HpyCH4III | ACNGT | 1 cut(s) | 626 |
| HpyCH4IV | ACGT | 1 cut(s) | 819 |
| HpyCH4V | TGCA | 9 cut(s) | 67, 299, 329, 673, 695, 773, 779, 806, 938 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 305, 335, 412, 482 |
| HpyF3I | CTNAG | 2 cut(s) | 603, 911 |
| HpySE526I | ACGT | 1 cut(s) | 819 |
| Hsp92II | CATG | 5 cut(s) | 57, 320, 515, 836, 942 |
| Ksp22I | TGATCA | 1 cut(s) | 718 |
| Kzo9I | GATC | 3 cut(s) | 9, 718, 796 |
| LmnI | GCTCC | 1 cut(s) | 473 |
| LpnPI | CCDG | 4 cut(s) | 261, 522, 604, 907 |
| LweI | GCATC | 2 cut(s) | 255, 316 |
| MaeII | ACGT | 1 cut(s) | 819 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 3 cut(s) | 11, 720, 798 |
| MboI | GATC | 3 cut(s) | 9, 718, 796 |
| MboII | GAAGA | 4 cut(s) | 86, 116, 455, 773 |
| MfeI | CAATTG | 2 cut(s) | 455, 933 |
| MflI | RGATCY | 1 cut(s) | 796 |
| MlsI | TGGCCA | 1 cut(s) | 831 |
| MluCI | AATT | 7 cut(s) | 391, 455, 592, 729, 742, 933, 959 |
| MluNI | TGGCCA | 1 cut(s) | 831 |
| MlyI | GAGTC | 2 cut(s) | 214, 797 |
| MmeI | TCCRAC | 2 cut(s) | 451, 821 |
| MnlI | CCTC | 5 cut(s) | 295, 417, 658, 834, 862 |
| Mox20I | TGGCCA | 1 cut(s) | 831 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MscI | TGGCCA | 1 cut(s) | 831 |
| MseI | TTAA | 3 cut(s) | 171, 711, 740 |
| Msp20I | TGGCCA | 1 cut(s) | 831 |
| MspA1I | CMGCKG | 1 cut(s) | 338 |
| MunI | CAATTG | 2 cut(s) | 455, 933 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 305, 335, 412, 482 |
| NcoI | CCATGG | 2 cut(s) | 53, 511 |
| NdeI | CATATG | 2 cut(s) | 135, 411 |
| NdeII | GATC | 3 cut(s) | 9, 718, 796 |
| NlaIII | CATG | 5 cut(s) | 57, 320, 515, 836, 942 |
| NlaIV | GGNNCC | 1 cut(s) | 798 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 4 cut(s) | 92, 380, 448, 599 |
| PleI | GAGTC | 2 cut(s) | 214, 796 |
| PmaCI | CACGTG | 1 cut(s) | 820 |
| PmlI | CACGTG | 1 cut(s) | 820 |
| PpsI | GAGTC | 2 cut(s) | 214, 796 |
| Ppu21I | YACGTR | 1 cut(s) | 820 |
| PspCI | CACGTG | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 1 cut(s) | 798 |
| PspPI | GGNCC | 2 cut(s) | 699, 811 |
| PsuI | RGATCY | 1 cut(s) | 796 |
| PvuII | CAGCTG | 1 cut(s) | 338 |
| RsaI | GTAC | 1 cut(s) | 931 |
| RsaNI | GTAC | 1 cut(s) | 930 |
| SaqAI | TTAA | 3 cut(s) | 171, 711, 740 |
| Sau3AI | GATC | 3 cut(s) | 9, 718, 796 |
| Sau96I | GGNCC | 2 cut(s) | 699, 811 |
| SchI | GAGTC | 2 cut(s) | 214, 797 |
| SfaNI | GCATC | 2 cut(s) | 255, 316 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SinI | GGWCC | 2 cut(s) | 699, 811 |
| SmlI | CTYRAG | 3 cut(s) | 640, 785, 921 |
| SmoI | CTYRAG | 3 cut(s) | 640, 785, 921 |
| Sse9I | AATT | 7 cut(s) | 391, 455, 592, 729, 742, 933, 959 |
| SsiI | CCGC | 1 cut(s) | 404 |
| StyI | CCWWGG | 3 cut(s) | 53, 511, 702 |
| TaaI | ACNGT | 1 cut(s) | 626 |
| TaiI | ACGT | 1 cut(s) | 822 |
| TaqI | TCGA | 2 cut(s) | 19, 886 |
| TasI | AATT | 7 cut(s) | 391, 455, 592, 729, 742, 933, 959 |
| TatI | WGTACW | 1 cut(s) | 929 |
| TfiI | GAWTC | 4 cut(s) | 92, 380, 448, 599 |
| Tru1I | TTAA | 3 cut(s) | 171, 711, 740 |
| Tru9I | TTAA | 3 cut(s) | 171, 711, 740 |
| TscAI | CASTG | 2 cut(s) | 154, 529 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 2 cut(s) | 126, 849 |
| TspRI | CASTG | 2 cut(s) | 154, 529 |
| VpaK11BI | GGWCC | 2 cut(s) | 699, 811 |
| XapI | RAATTY | 2 cut(s) | 391, 592 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |