FvH4_4g01311

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
1188682 .. 1189535
854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01311.t1

Sequence Viewer

Length: 672 bp
ATGAAAGTCTTGGTTGATATTCCAATTAAACCAGATGCTTTTCTTTGGAGGCCTACAGCTAGTATGTTCTGTTTTCAACAAGCTAAAGGTAGCATGATAGCATGGCCTGCTGAGAAGGTTATTTTGCAAATGGATCAACAGTCTGAAGAACAAGACAATTTATCTATGCATTCGAATCCGTACACCAATTCAAGAAACAAGTGCAAATTATTTGATTGGACCGGAAAAGATGAGATAGTTGCAAAAGGACGTTGGCATTCAAGTGATCTAAAAGCGATGGTCAATGGTATTCCTCTTGGACTCAATGTCATGATAGTTTGGGTAGATTTTCCAAAAAATCATGAAGCATTTTTATGGAGGTCTGCAACTGATATGACATGCATTGAAGATGTTGTGGGATATGCTATAGCATGGCCTGCTAATAAAGTTGTTTTGGAAAAGAAGTCAGTAAGTCAAGATGTTGGCAATGCATCCTCTTCTTTGAGTGCGAACACCAAATCAAATAAAAAATGCAAGTTGTTAGATGTTAGTGGATCAGGACAAATAGTTGCTAAAGGACGTTGGTCCTCGAGTGATCCAAATCAGCTTGTTCATTTTGTTCCATTAGGTCCTAATGCTGTGAAAGTTTGGGTAGATACACCAAAAGTCTCATTTGCATCCCTTTGGAGATAA

Protein Analysis

224

Amino Acids

24.88

Weight (kDa)

9.0

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 141, 541, 569
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 4 cut(s) 77, 192, 261, 386
AhdI GACNNNNNGTC 1 cut(s) 305
AluBI AGCT 3 cut(s) 59, 83, 586
AluI AGCT 3 cut(s) 59, 83, 586
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 3 cut(s) 141, 541, 569
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 3 cut(s) 50, 104, 413
AspS9I GGNCC 3 cut(s) 219, 564, 608
AsuII TTCGAA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 3 cut(s) 219, 564, 608
BccI CCATC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 54, 405
Bme18I GGWCC 3 cut(s) 219, 564, 608
BmeRI GACNNNNNGTC 1 cut(s) 305
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 219, 564, 608
BmsI GCATC 3 cut(s) 25, 479, 665
BoxI GACNNNNGTC 1 cut(s) 562
Bpu14I TTCGAA 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 579
BsaWI WCCGGW 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 579
BseGI GGATG 2 cut(s) 470, 656
BseJI GATNNNNATC 1 cut(s) 579
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 102
BshFI GGCC 3 cut(s) 52, 106, 415
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 652
BsmI GAATGC 2 cut(s) 169, 256
BsnI GGCC 3 cut(s) 52, 106, 415
BsoBI CYCGRG 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 173
Bsp143I GATC 4 cut(s) 133, 265, 533, 574
BspANI GGCC 3 cut(s) 52, 106, 415
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 2 cut(s) 309, 340
BspPI GGATC 3 cut(s) 141, 541, 569
BspT104I TTCGAA 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 472
BssMI GATC 4 cut(s) 133, 265, 533, 574
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 481
BstAPI GCANNNNNTGC 2 cut(s) 107, 416
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 108, 417
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 470, 656
BstKTI GATC 4 cut(s) 136, 268, 536, 577
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 4 cut(s) 133, 265, 533, 574
BstMWI GCNNNNNNNGC 2 cut(s) 107, 416
BstNSI RCATGY 1 cut(s) 381
BstPAI GACNNNNGTC 1 cut(s) 562
BstSFI CTRYAG 2 cut(s) 54, 405
BsuRI GGCC 3 cut(s) 52, 106, 415
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 470, 656
Cac8I GCNNGC 2 cut(s) 108, 417
CciI TCATGA 2 cut(s) 309, 340
Cfr13I GGNCC 3 cut(s) 219, 564, 608
Csp6I GTAC 1 cut(s) 181
CviAII CATG 6 cut(s) 94, 102, 310, 341, 378, 411
CviJI RGCY 6 cut(s) 52, 59, 83, 106, 415, 586
CviKI_1 RGCY 6 cut(s) 52, 59, 83, 106, 415, 586
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 111
DpnI GATC 4 cut(s) 135, 267, 535, 576
DpnII GATC 4 cut(s) 133, 265, 533, 574
DriI GACNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 481
Eco147I AGGCCT 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 219, 564, 608
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 608
EcoT22I ATGCAT 3 cut(s) 171, 383, 472
FaeI CATG 6 cut(s) 97, 105, 313, 344, 381, 414
FatI CATG 6 cut(s) 93, 101, 309, 340, 377, 410
FokI GGATG 2 cut(s) 457, 643
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 3 cut(s) 52, 106, 415
HapII CCGG 1 cut(s) 222
Hin1II CATG 6 cut(s) 97, 105, 313, 344, 381, 414
HinfI GANTC 2 cut(s) 175, 300
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 5 cut(s) 192, 310, 341, 455, 537
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 250, 559
HpyCH4V TGCA 9 cut(s) 127, 169, 204, 242, 365, 381, 470, 513, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 416
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 2 cut(s) 250, 559
Hsp92II CATG 6 cut(s) 97, 105, 313, 344, 381, 414
Kzo9I GATC 4 cut(s) 133, 265, 533, 574
LpnPI CCDG 5 cut(s) 45, 120, 235, 429, 522
LweI GCATC 3 cut(s) 25, 479, 665
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 250, 559
MalI GATC 4 cut(s) 135, 267, 535, 576
MboI GATC 4 cut(s) 133, 265, 533, 574
MboII GAAGA 3 cut(s) 158, 398, 468
MluCI AATT 4 cut(s) 24, 157, 187, 206
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 5 cut(s) 42, 303, 351, 484, 577
Mph1103I ATGCAT 3 cut(s) 171, 383, 472
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 261, 352
MspI CCGG 1 cut(s) 222
Mva1269I GAATGC 2 cut(s) 169, 256
MwoI GCNNNNNNNGC 2 cut(s) 107, 416
NdeII GATC 4 cut(s) 133, 265, 533, 574
NlaIII CATG 6 cut(s) 97, 105, 313, 344, 381, 414
NsiI ATGCAT 3 cut(s) 171, 383, 472
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 568
PagI TCATGA 2 cut(s) 309, 340
PceI AGGCCT 1 cut(s) 52
PctI GAATGC 2 cut(s) 169, 256
PfeI GAWTC 1 cut(s) 175
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PpuMI RGGWCCY 1 cut(s) 608
PshAI GACNNNNGTC 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 608
PspPI GGNCC 3 cut(s) 219, 564, 608
PspPPI RGGWCCY 1 cut(s) 608
PspXI VCTCGAGB 1 cut(s) 568
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 2 cut(s) 261, 352
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 4 cut(s) 133, 265, 533, 574
Sau96I GGNCC 3 cut(s) 219, 564, 608
SchI GAGTC 1 cut(s) 294
SetI ASST 9 cut(s) 61, 85, 91, 120, 253, 362, 562, 588, 610
SfaNI GCATC 3 cut(s) 25, 479, 665
SfcI CTRYAG 2 cut(s) 54, 405
Sfr274I CTCGAG 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 3 cut(s) 219, 564, 608
SlaI CTCGAG 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 261, 352
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 4 cut(s) 24, 157, 187, 206
SseBI AGGCCT 1 cut(s) 52
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 1 cut(s) 52
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 253, 562
TaqI TCGA 2 cut(s) 173, 569
TasI AATT 4 cut(s) 24, 157, 187, 206
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TspDTI ATGAA 3 cut(s) 17, 357, 581
TspGWI ACGGA 1 cut(s) 168
VpaK11BI GGWCC 3 cut(s) 219, 564, 608
XceI RCATGY 1 cut(s) 381
XhoI CTCGAG 1 cut(s) 568
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 3 cut(s) 171, 383, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.