Rorug02G0461700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000089
Physical Location & Seq
Forward (+)
59332295 .. 59338215
5921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0461700.1

Sequence Viewer

Length: 1872 bp
ATGCCGGCGGTGTACGGTTCCCGATTGACCACATTCGAGGACTCCGAGAAGGAGAGCGAGTTTGGATACGTCCGCAAGGTCTCAGGACCAGTCGTCGTTGCAGATGGCATGGGTGGGGCTGCCATGTACGAGCTGGTTCGTGTTGGAAATGATAATTTGATTGGTGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAAGTTTATGAGGAGACAGCTGGGTTGATGGTGAATGATCCTGTTCTACGTACACGCAAGCCTTTATCAGTGGAGCTGGGACCTGGAATTTTGGGAAATATTTTTGACGGAATCCAGAGACCTTTGAAAACTATTGCAAAAATATCTGGTGATGTCTATATCCCACGTGGTGTGTCTGTCCCAGCTCTTGACAAGGATATACTTTGGGAGTTTCAACCTAAAAAAATAGGTGAAGGTGATCATATAACTGGTGGAGACTTGTATGCTACTGTATTTGAAAATACTCTGATGCAGCACCATATGGCGCTTCCTCCTGATGCTATGGGAAAAGTTACATACGTTGCACCAGCTGGTCAATATTCATTGAAGGATACTGTATTGGAGCTTGAGTTTCAAGGTGTCAAAAAGCAATTTACTATGCTTCAGAGTTGGCCTGTACGTACACCAAGGCCTGTCGCATCAAAGCTTGCTGCCGATACCCCTTTGCTTACTGGGCAGCGTGTTCTTGATGCCCTTTTCCCCTCTGTTCTTGGTGGAACTTGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTTTCCAAGTATTCTAACTCAGACACTGTGGTTTATGTTGGTTGTGGAGAACGAGGAAATGAAATGGCTGAGGTTCTTATGGATTTTCCTCAACTGACAATGACTTTACCTGATGGTCGTGAAGAATCTGTCATGAAGCGAACAACACTGGTCGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAAGCTTCAATCTATACTGGAATCACTATTGCTGAATACTTCAGAGATATGGGATACAATGTTAGTATGATGGCAGATTCAACATCTCGATGGGCAGAAGCATTGCGTGAAATTTCTGGGCGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTATTTGGCAGCACGTTTAGCATCGTTTTATGAACGTGCCGGTAAAGTAAAATGTCTTGGTGGACCAGAGCGTACTGGTAGTGTGACTATTGTTGGTGCTGTTTCACCCCCTGGAGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTGGACAAGAAACTTGCTCAGAGGAAGCATTTCCCTTCTGTGAACTGGCTTATTTCGTACTCCAAGTATTCAACGGCATTAGAGTCTTTCTATGATAAATTTGATTCCGACTTTATCAACATCAGGACAAAGGCACGTGAGGTGTTGCAAAGAGAAGATGATCTGAATGAAATTGTCCAACTTGTAGGAAAGGATGCTTTAGCTGAAGGAGACAAGATCACCTTAGAAACTGCAAAGCTGTTGAGGGAGGATTATCTCGCACAGAATGCATTTACTCCATATGATAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGGAATATCATCCATTTCTTTAATTTGGCAAATCAGGCAGTAGAGAGAGCAGCTGGTATGGATGGTCAAAAGATTAATTACAGTCTAATCAAGCACCGTATGGGAGATCTCTTTTACCGCCTAGTGTCTCAAAAATTTGAGGATCCTGCTGAAGGTGAACAAGCGCTTGTGGCAAAATTTAAGAAGCTTCATGAAGACTTAACGAACGGTTTCCGTGCTCTTGAGGATGAAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

623

Amino Acids

68.74

Weight (kDa)

5.42

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 25 - 85 2.7e-15 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab_Xtn PF16886 127 - 214 8e-28 ATPsynthase alpha/beta subunit barrel-sandwich domain
ATP-synt_ab PF00006 232 - 458 1.2e-74 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 466 - 560 2.5e-28 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42700
fragaria_vesca FvH4_1g29233 FvH4_1g29373 FvH4_2g07142 FvH4_2g08144 FvH4_3g21852 FvH4_3g29221 FvH4_3g32731 FvH4_3g45091 FvH4_4g01311 FvH4_4g03220 FvH4_4g06631 FvH4_4g10040 FvH4_4g10363 FvH4_4g12371 FvH4_4g15323 FvH4_4g15580 FvH4_4g16173 FvH4_5g18843 FvH4_5g23172 FvH4_5g27660 FvH4_5g37213 FvH4_6g17382 FvH4_6g20172 FvH4_6g20173 FvH4_6g21082 FvH4_6g35541
malus_domestica MD02G1251500.v1.1 MD02G1252300.v1.1
pyrus_communis pycom01g02580 pycom01g08340 pycom01g08610 pycom11g01520 pycom12g04790
rosa_chinensis RchiOBHm_Chr0c16g0499821 RchiOBHm_Chr0c16g0499871 RchiOBHm_Chr0c28g0501051 RchiOBHm_Chr1g0313071 RchiOBHm_Chr1g0315701 RchiOBHm_Chr1g0318841 RchiOBHm_Chr1g0326261 RchiOBHm_Chr1g0357501 RchiOBHm_Chr2g0133581 RchiOBHm_Chr2g0134701 RchiOBHm_Chr2g0152521 RchiOBHm_Chr3g0455961 RchiOBHm_Chr3g0458231 RchiOBHm_Chr3g0460621 RchiOBHm_Chr3g0492791 RchiOBHm_Chr3g0492801 RchiOBHm_Chr3g0496631 RchiOBHm_Chr3g0496641 RchiOBHm_Chr4g0386541 RchiOBHm_Chr4g0415851 RchiOBHm_Chr4g0420561 RchiOBHm_Chr4g0422721 RchiOBHm_Chr4g0433611 RchiOBHm_Chr4g0444771 RchiOBHm_Chr5g0033771 RchiOBHm_Chr5g0059371 RchiOBHm_Chr5g0060161 RchiOBHm_Chr5g0064791 RchiOBHm_Chr5g0064801 RchiOBHm_Chr6g0269851 RchiOBHm_Chr6g0280321 RchiOBHm_Chr6g0287111 RchiOBHm_Chr7g0177401 RchiOBHm_Chr7g0200581 RchiOBHm_Chr7g0200591 RchiOBHm_Chr7g0231331
rosa_laevigata RLG00000001052 RLG00000001162 RLG00000002271 RLG00000002679 RLG00000007743 RLG00000009828 RLG00000009891 RLG00000009895 RLG00000009898 RLG00000017129 RLG00000018019 RLG00000018832 RLG00000018849 RLG00000019409 RLG00000019469 RLG00000019633 RLG00000019682 RLG00000020304 RLG00000024132 RLG00000027333 RLG00000028566 RLG00000031685 RLG00000031699 RLG00000034060 RLG00000034663 RLG00000035858 RLG00000036314
rosa_multiflora Rmu_sc0000178.1_g000001 Rmu_sc0000847.1_g000010 Rmu_sc0000861.1_g000033 Rmu_sc0001043.1_g000008 Rmu_sc0001499.1_g000050 Rmu_sc0001572.1_g000045 Rmu_sc0001768.1_g000043 Rmu_sc0001824.1_g000038 Rmu_sc0002037.1_g000022 Rmu_sc0002042.1_g000011 Rmu_sc0002322.1_g000001 Rmu_sc0002401.1_g000002 Rmu_sc0002438.1_g000018 Rmu_sc0002648.1_g000010 Rmu_sc0002784.1_g000047 Rmu_sc0003776.1_g000004 Rmu_sc0003780.1_g000005 Rmu_sc0004140.1_g000039 Rmu_sc0004596.1_g000033 Rmu_sc0004866.1_g000040 Rmu_sc0004964.1_g000011 Rmu_sc0005065.1_g000039 Rmu_sc0005137.1_g000032 Rmu_sc0005294.1_g000031 Rmu_sc0005426.1_g000005 Rmu_sc0005789.1_g000017 Rmu_sc0007891.1_g000008 Rmu_sc0008554.1_g000002 Rmu_sc0011363.1_g000002 Rmu_sc0020081.1_g000001 Rmu_ssc0000079.1_g000015
rosa_roxburghii Rroxscaffold_1G00010060 Rroxscaffold_1G00013840 Rroxscaffold_1G00031540 Rroxscaffold_1G00039640 Rroxscaffold_1G00048530 Rroxscaffold_2G00093720 Rroxscaffold_2G00093730 Rroxscaffold_2G00109830 Rroxscaffold_2G00109890 Rroxscaffold_2G00149920 Rroxscaffold_3G00274720 Rroxscaffold_4G00300310 Rroxscaffold_5G00347510 Rroxscaffold_5G00360920 Rroxscaffold_5G00362090 Rroxscaffold_5G00368170 Rroxscaffold_6G00391580 Rroxscaffold_7G00181720 Rroxscaffold_7G00209870
rosa_rugosa Rorug01G0071800 Rorug01G0071900 Rorug01G0072000 Rorug01G0072100 Rorug01G0084700 Rorug01G0104500 Rorug01G0104500 Rorug01G0134900.1 Rorug01G0135000.1 Rorug01G0183500 Rorug01G0256500 Rorug01G0312300 Rorug01G0312400 Rorug01G0351500 Rorug01G0384100 Rorug02G0039300 Rorug02G0319100 Rorug02G0319200 Rorug02G0319300 Rorug02G0461700 Rorug02G0531700 Rorug02G0617600 Rorug03G0155300 Rorug03G0190400 Rorug03G0248900 Rorug03G0249000 Rorug05G0141900 Rorug05G0325500 Rorug05G0325600 Rorug05G0369600 Rorug05G0490000 Rorug05G0490100.1 Rorug06G0009300 Rorug06G0035500 Rorug06G0082200 Rorug06G0133600 Rorug06G0133700 Rorug06G0149500 Rorug06G0149600 Rorug06G0149700 Rorug06G0351300 Rorug06G0443300 Rorug06G0443400 Rorug06G0443500 Rorug06G0443500 Rorug06G0443500 Rorug06G0480000 Rorug07G0260700 Rorug07G0260800 Rorug07G0289600 Rorug07G0289700 Rorug07G0319200 Rorug07G0319300
rosa_samantha Rh1AG098300 Rh1BG003900 Rh1BG262700 Rh1CG054000 Rh1CG054100 Rh1CG054200 Rh1CG232800 Rh1DG058300 Rh1DG058400 Rh1DG058500 Rh1DG085300 Rh1DG137700 Rh2AG234800 Rh2BG248300 Rh2CG045400 Rh2CG239300 Rh2CG239400 Rh2CG326600 Rh2CG349000 Rh2CG355400 Rh2CG402000 Rh2DG001000 Rh2DG242300 Rh3AG001600 Rh3AG306500 Rh3BG373600 Rh3CG001300 Rh3CG365600 Rh4AG013600 Rh4AG178000 Rh4AG198400 Rh4AG198600 Rh4AG416100 Rh4AG416300 Rh4BG029700 Rh4BG138600 Rh4BG150700 Rh4BG196400 Rh4BG427400 Rh4BG427600 Rh4CG442400 Rh4CG442500 Rh4DG171400 Rh4DG171500 Rh4DG171600 Rh4DG196200 Rh4DG423300 Rh4DG423400 Rh5AG490200 Rh5CG422300 Rh5CG428400 Rh5CG513400 Rh5CG519500 Rh5CG579300 Rh6AG225400 Rh6BG053200 Rh6BG195500 Rh6BG245600 Rh6DG161700 Rh6DG238400 Rh7AG348200 Rh7AG396700 Rh7AG396800 Rh7AG410600 Rh7BG445300 Rh7CG255900 Rh7CG365800 Rh7CG415100 Rh7CG415200 Rh7DG191000 Rh7DG191100 Rh7DG362700
rosa_wichuraiana Rw1G003060 Rw2G017950 Rw2G019900 Rw2G038280 Rw2G048340 Rw3G026970 Rw4G006460 Rw4G009350 Rw4G016820 Rw5G034510 Rw5G049530 Rw6G004160 Rw7G032270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 8, 73, 1099, 1633, 1750
AclWI GGATC 4 cut(s) 233, 1259, 1769, 1782
AcsI RAATTY 6 cut(s) 288, 1089, 1409, 1598, 1766, 1808
AcuI CTGAAG 4 cut(s) 608, 1003, 1536, 1803
AcvI CACGTG 2 cut(s) 368, 1448
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 7 cut(s) 14, 128, 253, 639, 643, 1210, 1370
AfeI AGCGCT 1 cut(s) 1797
AfiI CCNNNNNNNGG 2 cut(s) 1250, 1784
AgsI TTSAA 8 cut(s) 328, 416, 479, 568, 596, 987, 1059, 1383
AhdI GACNNNNNGTC 1 cut(s) 92
AjnI CCWGG 4 cut(s) 283, 751, 1246, 1296
Alw21I GWGCWC 1 cut(s) 1852
Alw26I GTCTC 6 cut(s) 85, 209, 313, 450, 1515, 1764
AlwI GGATC 4 cut(s) 233, 1259, 1769, 1782
AlwNI CAGNNNCTG 2 cut(s) 818, 1268
Aor51HI AGCGCT 1 cut(s) 1797
AoxI GGCC 2 cut(s) 632, 650
ApeKI GCWGC 7 cut(s) 119, 493, 671, 697, 971, 1145, 1682
ApoI RAATTY 6 cut(s) 288, 1089, 1409, 1598, 1766, 1808
AseI ATTAAT 1 cut(s) 1707
Asp700I GAANNNNTTC 3 cut(s) 171, 1340, 1841
AspLEI GCGC 2 cut(s) 508, 1798
AspS9I GGNCC 3 cut(s) 86, 281, 1199
AsuHPI GGTGA 8 cut(s) 176, 244, 362, 443, 449, 1233, 1522, 1799
AvaII GGWCC 3 cut(s) 86, 281, 1199
BamHI GGATCC 1 cut(s) 1774
BauI CACGAG 1 cut(s) 975
BbrPI CACGTG 2 cut(s) 368, 1448
BbsI GAAGAC 1 cut(s) 1833
Bbv12I GWGCWC 1 cut(s) 1852
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 7 cut(s) 106, 505, 658, 709, 958, 1157, 1694
BccI CCATC 6 cut(s) 98, 223, 899, 1042, 1062, 1688
BceAI ACGGC 1 cut(s) 1401
BciT130I CCWGG 4 cut(s) 285, 753, 1248, 1298
BciVI GTATCC 3 cut(s) 59, 565, 1025
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 6 cut(s) 85, 209, 313, 450, 1515, 1764
BfaI CTAG 1 cut(s) 1754
BfmI CTRYAG 1 cut(s) 1116
BfoI RGCGCY 2 cut(s) 509, 1799
BfuI GTATCC 3 cut(s) 59, 565, 1025
BglII AGATCT 1 cut(s) 1738
BisI GCNGC 8 cut(s) 120, 494, 672, 698, 972, 1100, 1146, 1683
BlsI GCNGC 8 cut(s) 121, 495, 673, 699, 973, 1101, 1147, 1684
Bme1390I CCNGG 4 cut(s) 285, 753, 1248, 1298
Bme18I GGWCC 3 cut(s) 86, 281, 1199
BmeRI GACNNNNNGTC 1 cut(s) 92
BmgT120I GGNCC 3 cut(s) 86, 281, 1199
BmiI GGNNCC 3 cut(s) 19, 282, 1776
BmrFI CCNGG 4 cut(s) 285, 753, 1248, 1298
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 7 cut(s) 480, 508, 668, 700, 1166, 1495, 1620
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 1833
BpmI CTGGAG 2 cut(s) 774, 1269
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 608
BsaAI YACGTR 4 cut(s) 251, 368, 641, 1448
BsaI GGTCTC 2 cut(s) 85, 313
BsaJI CCNNGG 2 cut(s) 647, 1246
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 1250, 1784
Bse118I RCCGGY 2 cut(s) 4, 1175
Bse1I ACTGG 7 cut(s) 89, 454, 697, 945, 1000, 1216, 1361
Bse3DI GCAATG 1 cut(s) 1079
BseBI CCWGG 4 cut(s) 285, 753, 1248, 1298
BseDI CCNNGG 2 cut(s) 647, 1246
BseGI GGATG 5 cut(s) 1510, 1632, 1641, 1699, 1864
BseLI CCNNNNNNNGG 2 cut(s) 1250, 1784
BseMI GCAATG 1 cut(s) 1079
BseMII CTCAG 6 cut(s) 96, 825, 852, 1275, 1300, 1343
BseNI ACTGG 7 cut(s) 89, 454, 697, 945, 1000, 1216, 1361
BseRI GAGGAG 2 cut(s) 227, 1266
BseXI GCAGC 7 cut(s) 106, 505, 658, 709, 958, 1157, 1694
BseYI CCCAGC 3 cut(s) 221, 277, 382
BshFI GGCC 2 cut(s) 634, 652
BsiHKAI GWGCWC 1 cut(s) 1852
BsiSI CCGG 2 cut(s) 5, 1176
BslFI GGGAC 2 cut(s) 294, 365
BslI CCNNNNNNNGG 2 cut(s) 1250, 1784
BsmAI GTCTC 6 cut(s) 85, 209, 313, 450, 1515, 1764
BsmFI GGGAC 2 cut(s) 294, 365
BsmI GAATGC 1 cut(s) 1582
BsnI GGCC 2 cut(s) 634, 652
Bso31I GGTCTC 2 cut(s) 85, 313
Bsp1286I GDGCHC 1 cut(s) 1852
Bsp143I GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
BspACI CCGC 5 cut(s) 8, 73, 1099, 1633, 1750
BspANI GGCC 2 cut(s) 634, 652
BspCNI CTCAG 6 cut(s) 95, 824, 853, 1274, 1299, 1342
BspHI TCATGA 2 cut(s) 924, 1822
BspLI GGNNCC 3 cut(s) 19, 282, 1776
BspMAI CTGCAG 1 cut(s) 1120
BspPI GGATC 4 cut(s) 233, 1259, 1769, 1782
BspTNI GGTCTC 2 cut(s) 85, 313
BsrDI GCAATG 1 cut(s) 1079
BsrFI RCCGGY 2 cut(s) 4, 1175
BsrI ACTGG 7 cut(s) 89, 454, 697, 945, 1000, 1216, 1361
BssAI RCCGGY 2 cut(s) 4, 1175
BssECI CCNNGG 2 cut(s) 647, 1246
BssMI GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 647
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 4 cut(s) 285, 753, 1248, 1298
Bst4CI ACNGT 8 cut(s) 17, 472, 577, 778, 820, 1715, 1730, 1841
BstAPI GCANNNNNTGC 1 cut(s) 1577
BstBAI YACGTR 4 cut(s) 251, 368, 641, 1448
BstC8I GCNNGC 5 cut(s) 6, 260, 669, 1104, 1116
BstDEI CTNAG 7 cut(s) 82, 811, 861, 1261, 1286, 1329, 1534
BstENI CCTNNNNNAGG 1 cut(s) 1782
BstF5I GGATG 5 cut(s) 1510, 1632, 1641, 1699, 1864
BstH2I RGCGCY 2 cut(s) 509, 1799
BstHHI GCGC 2 cut(s) 508, 1798
BstKTI GATC 7 cut(s) 241, 442, 1267, 1474, 1530, 1741, 1777
BstMAI GTCTC 6 cut(s) 85, 209, 313, 450, 1515, 1764
BstMBI GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
BstMWI GCNNNNNNNGC 7 cut(s) 694, 980, 1142, 1154, 1577, 1667, 1802
BstNI CCWGG 4 cut(s) 285, 753, 1248, 1298
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 4 cut(s) 283, 751, 1246, 1296
BstSFI CTRYAG 1 cut(s) 1116
BstSNI TACGTA 2 cut(s) 251, 641
BstV1I GCAGC 7 cut(s) 106, 505, 658, 709, 958, 1157, 1694
BstV2I GAAGAC 1 cut(s) 1833
BstX2I RGATCY 3 cut(s) 1264, 1738, 1774
BstYI RGATCY 3 cut(s) 1264, 1738, 1774
BsuI GTATCC 3 cut(s) 59, 565, 1025
BsuRI GGCC 2 cut(s) 634, 652
BtsCI GGATG 5 cut(s) 1510, 1632, 1641, 1699, 1864
BtsIMutI CAGTG 3 cut(s) 276, 816, 938
Cac8I GCNNGC 5 cut(s) 6, 260, 669, 1104, 1116
CaiI CAGNNNCTG 2 cut(s) 818, 1268
CciI TCATGA 2 cut(s) 924, 1822
CfoI GCGC 2 cut(s) 508, 1798
Cfr10I RCCGGY 2 cut(s) 4, 1175
Cfr13I GGNCC 3 cut(s) 86, 281, 1199
Csp6I GTAC 7 cut(s) 13, 127, 252, 638, 642, 1209, 1369
CviAII CATG 5 cut(s) 109, 124, 925, 961, 1823
CviQI GTAC 7 cut(s) 13, 127, 252, 638, 642, 1209, 1369
DdeI CTNAG 7 cut(s) 82, 811, 861, 1261, 1286, 1329, 1534
DpnI GATC 7 cut(s) 240, 441, 1266, 1473, 1529, 1740, 1776
DpnII GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
DraIII CACNNNGTG 1 cut(s) 371
DriI GACNNNNNGTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 92
Eco105I TACGTA 2 cut(s) 251, 641
Eco130I CCWWGG 1 cut(s) 647
Eco147I AGGCCT 1 cut(s) 652
Eco31I GGTCTC 2 cut(s) 85, 313
Eco32I GATATC 1 cut(s) 1130
Eco47I GGWCC 3 cut(s) 86, 281, 1199
Eco47III AGCGCT 1 cut(s) 1797
Eco57I CTGAAG 4 cut(s) 608, 1003, 1536, 1803
Eco72I CACGTG 2 cut(s) 368, 1448
EcoNI CCTNNNNNAGG 1 cut(s) 1782
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 4 cut(s) 283, 751, 1246, 1296
EcoRV GATATC 1 cut(s) 1130
EcoT14I CCWWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 1582
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 5 cut(s) 112, 127, 928, 964, 1826
FalI AAGNNNNNCTT 2 cut(s) 1517, 1549
FaqI GGGAC 2 cut(s) 294, 365
FatI CATG 5 cut(s) 108, 123, 924, 960, 1822
FauNDI CATATG 2 cut(s) 501, 1591
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 8 cut(s) 120, 494, 672, 698, 972, 1100, 1146, 1683
FokI GGATG 4 cut(s) 1517, 1628, 1639, 1706
Fsp4HI GCNGC 8 cut(s) 120, 494, 672, 698, 972, 1100, 1146, 1683
FspBI CTAG 1 cut(s) 1754
GlaI GCGC 2 cut(s) 507, 1797
GluI GCNGC 8 cut(s) 120, 494, 672, 698, 972, 1100, 1146, 1683
GsaI CCCAGC 3 cut(s) 225, 281, 386
GsuI CTGGAG 2 cut(s) 774, 1269
HaeII RGCGCY 2 cut(s) 509, 1799
HaeIII GGCC 2 cut(s) 634, 652
HapII CCGG 2 cut(s) 5, 1176
HhaI GCGC 2 cut(s) 508, 1798
Hin1II CATG 5 cut(s) 112, 127, 928, 964, 1826
Hin6I GCGC 2 cut(s) 506, 1796
HinP1I GCGC 2 cut(s) 506, 1796
HindIII AAGCTT 3 cut(s) 665, 981, 1817
HinfI GANTC 8 cut(s) 41, 188, 312, 917, 999, 1055, 1394, 1415
HpaII CCGG 2 cut(s) 5, 1176
HphI GGTGA 8 cut(s) 176, 244, 362, 443, 449, 1233, 1522, 1799
Hpy166II GTNNAC 6 cut(s) 13, 254, 644, 1199, 1354, 1790
Hpy188I TCNGA 9 cut(s) 46, 489, 627, 814, 1022, 1264, 1332, 1420, 1476
Hpy8I GTNNAC 6 cut(s) 13, 254, 644, 1199, 1354, 1790
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 8 cut(s) 43, 176, 428, 562, 1356, 1511, 1618, 1778
HpyCH4III ACNGT 8 cut(s) 17, 472, 577, 778, 820, 1715, 1730, 1841
HpyCH4IV ACGT 8 cut(s) 69, 250, 367, 540, 640, 1150, 1171, 1447
HpyCH4V TGCA 9 cut(s) 101, 338, 493, 545, 1118, 1280, 1459, 1544, 1580
HpyF10VI GCNNNNNNNGC 7 cut(s) 694, 980, 1142, 1154, 1577, 1667, 1802
HpyF3I CTNAG 7 cut(s) 82, 811, 861, 1261, 1286, 1329, 1534
HpySE526I ACGT 8 cut(s) 69, 250, 367, 540, 640, 1150, 1171, 1447
Hsp92II CATG 5 cut(s) 112, 127, 928, 964, 1826
HspAI GCGC 2 cut(s) 506, 1796
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
LmnI GCTCC 3 cut(s) 274, 583, 755
Lsp1109I GCAGC 7 cut(s) 106, 505, 658, 709, 958, 1157, 1694
LweI GCATC 7 cut(s) 480, 508, 668, 700, 1166, 1495, 1620
MaeI CTAG 1 cut(s) 1754
MaeII ACGT 8 cut(s) 69, 250, 367, 540, 640, 1150, 1171, 1447
MaeIII GTNAC 3 cut(s) 532, 1219, 1270
MalI GATC 7 cut(s) 240, 441, 1266, 1473, 1529, 1740, 1776
MboI GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
MboII GAAGA 3 cut(s) 926, 1478, 1838
MflI RGATCY 3 cut(s) 1264, 1738, 1774
MhlI GDGCHC 1 cut(s) 1852
MlyI GAGTC 2 cut(s) 35, 1403
MmeI TCCRAC 3 cut(s) 124, 1443, 1513
Mph1103I ATGCAT 1 cut(s) 1582
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 3 cut(s) 171, 1340, 1841
MseI TTAA 4 cut(s) 1653, 1707, 1812, 1832
MslI CAYNNNNRTG 2 cut(s) 965, 1066
MspA1I CMGCKG 3 cut(s) 221, 551, 1685
MspI CCGG 2 cut(s) 5, 1176
MspR9I CCNGG 4 cut(s) 285, 753, 1248, 1298
Mva1269I GAATGC 1 cut(s) 1582
MvaI CCWGG 4 cut(s) 285, 753, 1248, 1298
MwoI GCNNNNNNNGC 7 cut(s) 694, 980, 1142, 1154, 1577, 1667, 1802
NaeI GCCGGC 1 cut(s) 6
NdeI CATATG 2 cut(s) 501, 1591
NdeII GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 112, 127, 928, 964, 1826
NlaIV GGNNCC 3 cut(s) 19, 282, 1776
NmuCI GTSAC 2 cut(s) 1219, 1270
NsiI ATGCAT 1 cut(s) 1582
NspI RCATGY 1 cut(s) 964
PagI TCATGA 2 cut(s) 924, 1822
PceI AGGCCT 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 1582
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 3 cut(s) 171, 1340, 1841
PfeI GAWTC 6 cut(s) 188, 312, 917, 999, 1055, 1415
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 8 cut(s) 121, 495, 673, 699, 973, 1101, 1147, 1684
PleI GAGTC 2 cut(s) 35, 1402
PmaCI CACGTG 2 cut(s) 368, 1448
PmlI CACGTG 2 cut(s) 368, 1448
PpsI GAGTC 2 cut(s) 35, 1402
Ppu21I YACGTR 4 cut(s) 251, 368, 641, 1448
PpuMI RGGWCCY 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 1707
Psp5II RGGWCCY 1 cut(s) 281
Psp6I CCWGG 4 cut(s) 283, 751, 1246, 1296
PspCI CACGTG 2 cut(s) 368, 1448
PspFI CCCAGC 3 cut(s) 221, 277, 382
PspGI CCWGG 4 cut(s) 283, 751, 1246, 1296
PspN4I GGNNCC 3 cut(s) 19, 282, 1776
PspPI GGNCC 3 cut(s) 86, 281, 1199
PspPPI RGGWCCY 1 cut(s) 281
PstI CTGCAG 1 cut(s) 1120
PstNI CAGNNNCTG 2 cut(s) 818, 1268
PsuI RGATCY 3 cut(s) 1264, 1738, 1774
PvuII CAGCTG 3 cut(s) 221, 551, 1685
RsaI GTAC 7 cut(s) 14, 128, 253, 639, 643, 1210, 1370
RsaNI GTAC 7 cut(s) 13, 127, 252, 638, 642, 1209, 1369
RseI CAYNNNNRTG 2 cut(s) 965, 1066
SaqAI TTAA 4 cut(s) 1653, 1707, 1812, 1832
SatI GCNGC 8 cut(s) 120, 494, 672, 698, 972, 1100, 1146, 1683
Sau3AI GATC 7 cut(s) 238, 439, 1264, 1471, 1527, 1738, 1774
Sau96I GGNCC 3 cut(s) 86, 281, 1199
SchI GAGTC 2 cut(s) 35, 1403
ScrFI CCNGG 4 cut(s) 285, 753, 1248, 1298
SduI GDGCHC 1 cut(s) 1852
SfaNI GCATC 7 cut(s) 480, 508, 668, 700, 1166, 1495, 1620
SfcI CTRYAG 1 cut(s) 1116
SinI GGWCC 3 cut(s) 86, 281, 1199
SmiMI CAYNNNNRTG 2 cut(s) 965, 1066
SmlI CTYRAG 2 cut(s) 587, 1853
SmoI CTYRAG 2 cut(s) 587, 1853
SnaBI TACGTA 2 cut(s) 251, 641
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 5 cut(s) 8, 73, 1099, 1633, 1750
SspI AATATT 2 cut(s) 301, 560
SspMI CTAG 1 cut(s) 1754
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 4 cut(s) 283, 751, 1246, 1296
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 8 cut(s) 17, 472, 577, 778, 820, 1715, 1730, 1841
TaiI ACGT 8 cut(s) 72, 253, 370, 543, 643, 1153, 1174, 1450
TaqI TCGA 3 cut(s) 36, 1066, 1867
TauI GCSGC 1 cut(s) 1102
TfiI GAWTC 6 cut(s) 188, 312, 917, 999, 1055, 1415
Tru1I TTAA 4 cut(s) 1653, 1707, 1812, 1832
Tru9I TTAA 4 cut(s) 1653, 1707, 1812, 1832
TscAI CASTG 3 cut(s) 276, 823, 945
TseFI GTSAC 2 cut(s) 1219, 1270
TseI GCWGC 7 cut(s) 119, 493, 671, 697, 971, 1145, 1682
Tsp45I GTSAC 2 cut(s) 1219, 1270
TspDTI ATGAA 7 cut(s) 552, 867, 941, 1182, 1494, 1811, 1839
TspGWI ACGGA 2 cut(s) 324, 1835
TspRI CASTG 3 cut(s) 276, 823, 945
VpaK11BI GGWCC 3 cut(s) 86, 281, 1199
VspI ATTAAT 1 cut(s) 1707
XagI CCTNNNNNAGG 1 cut(s) 1782
XapI RAATTY 6 cut(s) 288, 1089, 1409, 1598, 1766, 1808
XceI RCATGY 1 cut(s) 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmnI GAANNNNTTC 3 cut(s) 171, 1340, 1841
XspI CTAG 1 cut(s) 1754
Zsp2I ATGCAT 1 cut(s) 1582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.